Guillenea, A., Lund, M. S., Evans, R.
, Boerner, V. & Karaman, E. (2023).
A breed-of-origin of alleles model that includes crossbred data improves predictive ability for crossbred animals in a multi-breed population.
Genetics, selection, evolution : GSE,
55(1), Article 34.
https://doi.org/10.1186/s12711-023-00806-1
Forte, F. P., Malinowska, M., Nagy, I., Schmid, J., Dijkwel, P., Hume, D. E., Johnson, R. D., Simpson, W. R.
& Asp, T. (2023).
Methylome changes in Lolium perenne associated with long-term colonisation by the endophytic fungus Epichloë sp. LpTG-3 strain AR37.
Frontiers in Plant Science,
14, Article 1258100.
https://doi.org/10.3389/fpls.2023.1258100,
https://doi.org/10.3389/fpls.2023.1258100
Christensen, B., Buitenhuis, A. J., Jacobsen, L. N., Ostenfeld, M. S. & Sørensen, E. S. (2023).
The Effect of Human and Bovine Milk Osteopontin on Intestinal Caco-2 Cells: A Transcriptome Comparison.
Nutrients,
15(5), Article 1166.
https://doi.org/10.3390/nu15051166
Cai, Z., Wu, X., Thomsen, B., Lund, M. S. & Sahana, G. (2023).
Genome-wide association study identifies functional genomic variants associated with young stock survival in Nordic Red Dairy Cattle.
Journal of Dairy Science,
106(11), 7832-7845.
https://doi.org/10.3168/jds.2023-23252
Bornhofen, E., Fé, D., Nagy, I., Lenk, I., Greve, M., Didion, T., Jensen, C. S.
, Asp, T. & Janss, L. (2023).
Genetic architecture of inter-specific and -generic grass hybrids by network analysis on multi-omics data.
BMC Genomics,
24(1), Article 213.
https://doi.org/10.1186/s12864-023-09292-7
Bolormaa, S., Haile-Mariam, M., Marett, L., Miglior, F., Baes, C. F., Schenkel, F. S., Connor, E. E.
, Manzanilla Pech, C. I. V., Wall, E., Coffey, M., Goddard, M., MacLeod, I. & Pryce, J. E. (2023).
Use of dry-matter intake recorded at multiple time periods during lactation increases the accuracy of genomic prediction for dry-matter intake and residual feed intake in dairy cattle.
Animal Production Science,
63(11), 1113-1125. Article AN23022.
https://doi.org/10.1071/AN23022
Bokde, N. D., Milkevych, V., Nielsen, R. K., Villumsen, T. M. & Sahana, G. (2023).
A novel approach for anomaly detection in dairy cow gas emission records.
Computers and Electronics in Agriculture,
214, Article 108286.
https://doi.org/10.1016/j.compag.2023.108286
Boggio, G. M.
, Christensen, O. F., Legarra, A., Meynadier, A. & Marie-Etancelin, C. (2023).
Microbiability of milk composition and genetic control of microbiota effects in sheep.
Journal of Dairy Science,
106(9), 6288-6298.
https://doi.org/10.3168/jds.2022-22948
Bjerge, K., Geissmann, Q., Alison, J., Mann, H. M. R., Høye, T. T., Dyrmann, M. & Karstoft, H. (2023).
Hierarchical classification of insects with multitask learning and anomaly detection.
Ecological Informatics,
77, Article 102278.
https://doi.org/10.1016/j.ecoinf.2023.102278
Ahuja, B., Doriya, R., Salunke, S., Hashmi, M. F., Gupta, A.
& Bokde, N. D. (2023).
HDIEA: high dimensional color image encryption architecture using five-dimensional Gauss-logistic and Lorenz system.
Connection Science,
35(1), Article 2175792.
https://doi.org/10.1080/09540091.2023.2175792
Ahmad, S., Drag, M. H., Mohamad Salleh, S.
, Cai, Z. & Nielsen, M. O. (2023).
Gene coexpression network analysis reveals perirenal adipose tissue as an important target of prenatal malnutrition in sheep.
Physiological Genomics,
55(9), 392-413.
https://doi.org/10.1152/physiolgenomics.00128.2022
Adlam, D.
, Berrandou, T. E., Georges, A., Nelson, C. P., Giannoulatou, E., Henry, J., Ma, L., Blencowe, M., Turley, T. N., Yang, M. L., Chopade, S., Finan, C., Braund, P. S., Sadeg-Sayoud, I., Iismaa, S. E., Kosel, M. L., Zhou, X., Hamby, S. E., Cheng, J. ... DISCO register (2023).
Genome-wide association meta-analysis of spontaneous coronary artery dissection identifies risk variants and genes related to artery integrity and tissue-mediated coagulation.
Nature Genetics,
55(6), 964-972.
https://doi.org/10.1038/s41588-023-01410-1
Olesen, J. E., Munkholm, L. J., Kudsk, P., Gregersen, P. L., Kongsted, A. G., Børsting, C. F., Callesen, H., Sørensen, J. T., Henriksen, B. I. F., Woyengo, T. A., Villumsen, T. M., Rasmussen, M. D. & Andersen, M. N., (2022).
Notat om klimaforandringernes betydning for dansk landbrug, No. 2022-0431984, 35 p., Sept 23, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug
Buitenhuis, A. J., Kongsted, H., Villumsen, T. M. & Lund, M. S., (2022).
Et resumé af Leverdrejning (lobus sinister lateralis) i grise: Et pilotstudie der undersøger, om der er en simpel genetisk baggrund, No. 2021-0237290, 6 p., May 12, 2022.
Raffo, M. A., Sarup, P. M., Andersen, J. R., Orabi, J., Jahoor, A.
& Jensen, J. (2022).
Genomic prediction for complex traits in wheat: a growth degree-days based reaction norm and multi-trait approach. Abstract from XVIIIth Eucarpia Biometrics in Plant Breeding Conference.
Raffo, M. A., Sarup, P. M., Andersen, J. R., Guo, X., Liu, H., Orabi, J., Jahoor, A.
& Jensen, J. (2022).
Improvement of genomic prediction in advanced wheat breeding lines by including additive-by-additive epistasis. Abstract from Plant and Animal Genome - IWGSC.
Econogene Consortium, Ajmone-Marsan, P., Bradley, D. G., Colli, L., Drögemüller, C., Lei, C., Mannen, H., Pompanon, F., Tosser-Klopp, G. & Jiang, Y. (2022).
Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. In R. F. Veerkamp & Y. de Haas (Eds.),
Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges (pp. 886-889). Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-940-4_208
Clasen, J. B., Nielsen, H. M., Hein, L., Johansen, K., Vestergaard, M. & Kargo, M. (2022).
Performance of first parity Holstein, Danish Red and their crosses in an experimental setting. In
Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (EAAP): Book of abstracts No. 28 (2022) (pp. 671). Wageningen Academic Publishers.
https://www.eaap2022.org/docs/AbstractBookEAAP.pdf
Tenhunen, S. R., Thomasen, J. R., Sørensen, L. P., Aamand, G. P.
, Berg, P. & Kargo, M. (2022).
Inbreeding and coancestry trends in Nordic Holstein. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/67_009.pdf
Stephansen, R. B., Martin, P., Gredler-Grandl, B.
, Manzanilla Pech, C. I. V., Sahana, G., Ducrocq, V., Baes, C. F., Schenkel, F. S., Veerkamp, R.
& Lassen, J. (2022).
Novel genetic parameters to improve gRFI in dairy cattle using big data from multiple lactations and countries. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/14_014.pdf
Saintilan, R., Croiseau, P., Baur, A., Croue, I., Ducrocq, V.
, Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022).
Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). In
Proceedings of the 2022 Interbull Meeting (pp. 18-22)
https://journal.interbull.org/index.php/ib
Rome, H. J. S., Chu, T. T., Marois, D., Huang, C.-H.
, Madsen, P. & Jensen, J. (2022).
Estimating environmental direct-maternal covariance in real data – illustration on broilers. In
WCGALP 2022 Programme Book Wageningen Academic Publishers.
https://wcgalp.com/wp-content/uploads/2022/07/e-WCGALP22-programme-booklet.pdf
Ostersen, T., Henryon, M.
, Guo, X., Christensen, O. F., Su, G. & Sørensen, A. C. (2022).
Non-genetic correlations between production traits and litter traits in pigs are important to account for. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/68_015.pdf
Milkevych, V., Karaman, E., Sahana, G., Janss, L., Cai, Z. & Lund, M. S. (2022).
Quantitative trait simulation using MeSCoT software. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/30_009.pdf
Martinez Boggio, G., Meynadier, A., Rupp, R., Allain, C.
, Buitenhuis, A. J. & Marie-Etancelin, C. (2022).
Evidence of genetic links between rumen bacteria and milk somatic cell score in Lacaune dairy sheep. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/66_004.pdf
Martinez Boggio, G.
, Christensen, O. F., Legarra, A., Allain, C., Meynadier, A. & Marie-Etancelin, C. (2022).
Rumen bacteria do not provide improved genetic evaluation of dairy traits in sheep. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/05_009.pdf
Liu, H., Nielsen, H. M., Kargo, M., Thomasen, J. R., Berg, P., Slagboom, M., Sørensen, A. C.
& Milkevych, V. (2022).
Simulation of animal crossbreeding schemes using ADAM software. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/56_007.pdf
Kempe, R. M., Mehtiö, T., Leino, A.-M., Koivula, M., Pitkänen, T. J.
, Stephansen, R. B., Mäntysaari, P., Negussie, E., Pösö, J., Nielsen, U. S., Fikse, W. F., Aamand, G. P. & Lidauer, M. H. (2022).
Single-step genomic prediction for metabolic body weight of Nordic Red dairy cattle. In
WCGALP 2022: Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/14_005.pdf
Kargo, M., Nielsen, H. M., Østergaard, S., Kring, R. D.
, Slagboom, M., Clasen, J. B. & Thomasen, J. R. (2022).
Should we breed cows like pigs? A new organisation of dairy cattle breeding. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/45_007.pdf
Karaman, E., Milkevych, V., Cai, Z., Janss, L., Sahana, G. & Lund, M. S. (2022).
Genomic prediction with incomplete omics data. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/13_012.pdf
Islam, M. S., Van der Werf, JHJ., Henryon, M.
, Chu, T. T., Wood, B. J. & Hermesch, S. (2022).
Genotyping dead animals improves post-weaning survival of pigs in breeding programs. In
WCGALP2022 Programme book Wageningen Academic Publishers.
https://wcgalp.com/wp-content/uploads/2022/07/e-WCGALP22-programme-booklet.pdf
Hansen, L. S., Laursen, S. F., Bahrndorff, S.
, Kargo, M., Kristensen, T. N.
, Sahana, G., Sørensen, J. G. & Nielsen, H. M. (2022).
Towards selective breeding in insects – estimating genetic parameters with individual-level phenotypes and pedigree. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/53_010.pdf
Gredler-Grandl, B., Raymond, B., Schopen, G. C. B., Chitneedi, P. K.
, Cai, Z., Manzanilla Pech, C. I. V., Iso-Touru, T., Fischer, D., Bolormaa, S., Chud, T. C. S., Schenkel, F. S., Wang, Y., Li, C., Hailemariam, D., Villanueva, B., Fernandez, A., Kuehn, C.
, Sahana, G., Lidauer, M. ... Bouwman, A. C. (2022).
Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_010.pdf
Gebreyesus, G., Secher, J. B.-M.
, Lund, M. S., Kupisiewicz, K., Ivask, M.
& Su, G. (2022).
Bull effects on in vitro embryo production quality traits are repeatable and heritable. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/21_004.pdf
Croiseau, P., Saintilan, R., Baur, A., Croue, I., Ducrocq, V.
, Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022).
Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_001.pdf
Bouquet, A. E. R., Slagboom, M., Thomasen, J. R., Friggens, N.
, Kargo, M. & Puillet, L. (2022).
Mechanistic-based prediction of selection response on resilience and feed efficiency traits in dairy cattle. In
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/09_009.pdf
Barre, P.
, Asp, T., Byrne, S., Casler, M., Faville, M., Rognli, O. A., Roldan-Ruiz, I., Skøt, L. & Ghesquière, M. (2022).
Genomic Prediction of Complex Traits in Forage Plants Species: Perennial Grasses Case. In
Methods in Molecular Biology (pp. 521-541). Humana Press Inc.
https://doi.org/10.1007/978-1-0716-2205-6_19
Gautason, E., Sahana, G., Su, G., Benjamínsson, B. H., Jóhannesson, G.
& Guldbrandtsen, B. (2022).
Corrigendum: Short communication: Investigation of the feasibility of genomic selection in Icelandic cattle (Journal of Animal Science (2021) 99:7 DOI: 10.1093/jas/skab139).
Journal of Animal Science,
100(2), Article skac016.
https://doi.org/10.1093/jas/skac016
Sawant, M., Patil, R., Shikhare, T., Nagle, S., Chavan, S., Negi, S.
& Bokde, N. D. (2022).
A Selective Review on Recent Advancements in Long, Short and Ultra-Short-Term Wind Power Prediction.
Energies,
15(21), Article 8107.
https://doi.org/10.3390/en15218107
Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, L., Fei, Z., Städler, T., Xu, S. ... Huang, S. (2022).
Graph pangenome captures missing heritability and empowers tomato breeding.
Nature,
606(7914), 527-534.
https://doi.org/10.1038/s41586-022-04808-9
Zhang, H., Wang, K., An, T., Zhu, L., Chang, Y., Lou, W., Liu, L., Guo, G.
, Liu, A., Su, G., Brito, L. F. & Wang, Y. (2022).
Genetic parameters for dairy calf and replacement heifer wellness traits and their association with cow longevity and health indicators in Holstein cattle.
Journal of Dairy Science,
105(8), 6749-6759.
https://doi.org/10.3168/jds.2021-21450
Zaalberg, R. M., Nielsen, H. M., Sorensen, A. C., Chu, T. T., Jensen, J. & Villumsen, T. M. (2022).
The Effect of Using Organic or Conventional Sires on Genetic Gain in Organic Pigs: A Simulation Study.
Animals,
12(4), Article 455.
https://doi.org/10.3390/ani12040455
Yao, Y., Liu, S., Xia, C.
, Gao, Y., Pan, Z., Canela-Xandri, O., Khamseh, A., Rawlik, K., Wang, S.
, Li, B., Zhang, Y., Pairo-Castineira, E., D’Mellow, K.
, Li, X., Yan, Z., Li, C. J., Yu, Y., Zhang, S.
, Ma, L. ... Tenesa, A. (2022).
Comparative transcriptome in large-scale human and cattle populations.
Genome Biology,
23(1), Article 176.
https://doi.org/10.1186/s13059-022-02745-4
Yang, W., Yu, J., Yao, Y., Chen, S., Zhao, B., Liu, S.
, Zhou, L., Fang, L. & Liu, J. (2022).
Comparative immune-relevant transcriptome reveals the evolutionary basis of complex traits.
iScience,
25(12), Article 105572.
https://doi.org/10.1016/j.isci.2022.105572
Wang, B., Li, P., Hou, L., Zhou, W., Tao, W., Liu, C., Liu, K., Niu, P., Zhang, Z.
, Li, Q., Su, G. & Huang, R. (2022).
Genome-wide association study and genomic prediction for intramuscular fat content in Suhuai pigs using imputed whole-genome sequencing data.
Evolutionary Applications,
15(12), 2054-2066.
https://doi.org/10.1111/eva.13496
Sterenborg, R. B. T. M., Galesloot, T. E., Teumer, A., Netea-Maier, R. T.
, Speed, D., Meima, M. E., Visser, W. E., Smit, J. W. A., Peeters, R. P. & Medici, M. (2022).
The effects of common genetic variation in 96 genes involved in thyroid hormone regulation on TSH and FT4 concentrations.
The Journal of Clinical Endocrinology & Metabolism,
107(6), e2276-e2283.
https://doi.org/10.1210/clinem/dgac136
Slagboom, M., Milkevych, V., Liu, H., Thomasen, J. R., Kargo, M. & Schmidtmann, C. (2022).
Conservation of local Red cattle breeds by collaboration with a mainstream Red dairy cattle breed.
Livestock Science,
260, Article 104936.
https://doi.org/10.1016/j.livsci.2022.104936
Shi, L., Wang, L.
, Fang, L., Li, M., Tian, J., Wang, L. & Zhao, F. (2022).
Integrating genome-wide association studies and population genomics analysis reveals the genetic architecture of growth and backfat traits in pigs.
Frontiers in Genetics,
13, Article 1078696.
https://doi.org/10.3389/fgene.2022.1078696
Shende, M. K., Salih, S. Q.
, Bokde, N. D., Scholz, M., Oudah, A. Y. & Yaseen, Z. M. (2022).
Natural Time Series Parameters Forecasting: Validation of the Pattern-Sequence-Based Forecasting (PSF) Algorithm; A New Python Package.
Applied Sciences (Switzerland),
12(12), Article 6194.
https://doi.org/10.3390/app12126194
Schmidtmann, C.
, Slagboom, M., Sørensen, A. C., Hinrichs, D., Thaller, G.
& Kargo, M. (2022).
Short- and long-term consequences of collaboration between Northern European Red dairy and dual-purpose cattle.
Journal of Animal Breeding and Genetics,
139(4), 447-461.
https://doi.org/10.1111/jbg.12672
Sammad, A., Zhang, H., Shi, R., Dong, Y., Luo, H., Chen, Z., Liu, L., Guo, G.
, Liu, A. & Wang, Y. (2022).
A Post-GWAS Functional Analysis Confirming Effects of Three BTA13 Genes CACNB2, SLC39A12, and ZEB1 on Dairy Cattle Reproduction.
Frontiers in Genetics,
13, Article 882951.
https://doi.org/10.3389/fgene.2022.882951
Salunke, S., Ahuja, B., Hashmi, M. F., Marriboyina, V.
& Bokde, N. D. (2022).
5D Gauss Map Perspective to Image Encryption with Transfer Learning Validation.
Applied Sciences,
12(11), Article 5321.
https://doi.org/10.3390/app12115321