Gebreyesus, G., Cheruiyot Bett , R., Nkirote Kunyanga , C., MBI Tanga, C., Nakimbugwe, D., Khamis, F., Kinyua, J., Muchina, K., Roos, N., Walusimbi, S., Geoffrey, S.
& Sahana, G. (2023, jan.).
FLYgene - Stakeholders’ workshop report.
Andersen, M. N., Olesen, J. E., Holst, N., Skovgård, H., Kudsk, P., Jørgensen, L. N., Børgesen, C. D., Munkholm, L. J., Iversen, B. V., Gregersen, P. L., Holme, I., Brinch-Pedersen, H., Kongsted, A. G., Børsting, C. F., Sørensen, J. T., Henriksen, B. I. F., Callesen, H., Woyengo, T. A., Ejrnæs, R. ... Li, R. (2023).
Vidensyntese om klimatilpasning og landbrug.
Zhang, Z., Shi, S., Zhang, Q., Aamand, G. P.
, Lund, M. S., Su, G. & Ding, X. (2023).
Improving Genomic Prediction Accuracy in the Chinese Holstein Population by Combining with the Nordic Holstein Reference Population.
Animals,
13(4).
https://doi.org/10.3390/ani13040636,
https://doi.org/10.3390/ani13040636Zaalberg, R. M., Chu, T. T., Bovbjerg, H.
, Jensen, J. & Villumsen, T. M. (2023).
Genetic parameters for early piglet weight, litter traits and number of functional teats in organic pigs.
Animal,
17(3), [100717].
https://doi.org/10.1016/j.animal.2023.100717
Therkildsen, M., Vestergaard, M., Kargo, M., Keto, L., Ertbjerg, P., Thorkelsson, G., Gudjónsdóttir, M., Kjetså, M., Honkatukia, M., Egelandsdal, B., Svartedal, N., Røe, M., Fikse, F. W., Karlssom, A. H. & Hessle, A. (2023).
Carcass characteristics of Nordic native cattle breeds.
Genetic Resources,
4(7), 1-19.
https://doi.org/10.46265/genresj.LWUP7415
Sahana, J., Cortés-Sánchez, J. L., Sandt, V.
, Melnik, D., Corydon, T. J., Schulz, H.
, Cai, Z., Evert, K.
, Grimm, D. & Wehland, M. (2023).
Long-Term Simulation of Microgravity Induces Changes in Gene Expression in Breast Cancer Cells.
International Journal of Molecular Sciences ,
24(2).
https://doi.org/10.3390/ijms24021181
Rohner, M., Manzanares, C., Yates, S., Thorogood, D., Copetti, D.
, Lübberstedt, T., Asp, T. & Studer, B. (2023).
Fine-Mapping and Comparative Genomic Analysis Reveal the Gene Composition at the S and Z Self-incompatibility Loci in Grasses.
Molecular Biology and Evolution,
40(1).
https://doi.org/10.1093/molbev/msac259Rasmussen, C. B., Scavenius, C., Thøgersen, I. B., Harwood, S. L., Larsen, Ø., Bjerga, G. E. K.
, Stougaard, P., Enghild, J. J. & Thøgersen, M. S. (2023).
Characterization of a novel cold-adapted intracellular serine protease from the extremophile Planococcus halocryophilus Or1.
Frontiers in Microbiology,
14, [1121857].
https://doi.org/10.3389/fmicb.2023.1121857
Mei, Q., Liu, H., Zhao, S., Xiang, T.
& Christensen, O. F. (2023).
Genomic evaluation for two-way crossbred performance in cattle.
Genetics, selection, evolution : GSE,
55(1), 17.
https://doi.org/10.1186/s12711-023-00792-4Liu, T., Nielsen, B., Christensen, O. F., Lund, M. S. & Su, G. (2023).
The impact of genotyping strategies and statistical models on accuracy of genomic prediction for survival in pigs.
Journal of Animal Science and Biotechnology,
14(1), [1].
https://doi.org/10.1186/s40104-022-00800-5
Jiang, Y. F., Wang, S., Wang, C. L., Xu, R. H., Wang, W. W., Jiang, Y., Wang, M. S., Jiang, L., Dai, L. H., Wang, J. R., Chu, X. H., Zeng, Y. Q.
, Fang, L. Z., Wu, D. D., Zhang, Q. & Ding, X. D. (2023).
Pangenome obtained by long-read sequencing of 11 genomes reveal hidden functional structural variants in pigs.
iScience,
26(3), [106119].
https://doi.org/10.1016/j.isci.2023.106119Amstrup, S. K., Ong, S. C.
, Sofos, N., Karlsen, J. L., Skjerning, R. B., Boesen, T., Enghild, J. J., Hove-Jensen, B. & Brodersen, D. E. (2023).
Structural remodelling of the carbon–phosphorus lyase machinery by a dual ABC ATPase.
Nature Communications,
14(1), [1001].
https://doi.org/10.1038/s41467-023-36604-y
Olesen, J. E., Munkholm, L. J., Kudsk, P., Gregersen, P. L., Kongsted, A. G., Børsting, C. F., Callesen, H., Sørensen, J. T., Henriksen, B. I. F., Woyengo, T. A., Villumsen, T. M., Rasmussen, M. D. & Andersen, M. N., (2022).
Notat om klimaforandringernes betydning for dansk landbrug, Nr. 2022-0431984, 35 s., sep. 23, 2022. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug
Buitenhuis, A. J., Kongsted, H., Villumsen, T. M. & Lund, M. S., (2022).
Et resumé af Leverdrejning (lobus sinister lateralis) i grise: Et pilotstudie der undersøger, om der er en simpel genetisk baggrund, Nr. 2021-0237290, 6 s., maj 12, 2022.
Raffo, M. A., Sarup, P. M., Andersen, J. R., Orabi, J., Jahoor, A.
& Jensen, J. (2022).
Genomic prediction for complex traits in wheat: a growth degree-days based reaction norm and multi-trait approach. Abstract fra XVIIIth Eucarpia Biometrics in Plant Breeding Conference.
Raffo, M. A., Sarup, P. M., Andersen, J. R., Guo, X., Liu, H., Orabi, J., Jahoor, A.
& Jensen, J. (2022).
Improvement of genomic prediction in advanced wheat breeding lines by including additive-by-additive epistasis. Abstract fra Plant and Animal Genome - IWGSC.
Clasen, J. B., Nielsen, H. M., Hein, L., Johansen, K., Vestergaard, M. & Kargo, M. (2022).
Performance of first parity Holstein, Danish Red and their crosses in an experimental setting. I
Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (EAAP): Book of abstracts No. 28 (2022) (s. 671). Wageningen Academic Publishers.
https://www.eaap2022.org/docs/AbstractBookEAAP.pdf
Tenhunen, S. R., Thomasen, J. R., Sørensen, L. P., Aamand, G. P.
, Berg, P. & Kargo, M. (2022).
Inbreeding and coancestry trends in Nordic Holstein. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/67_009.pdf
Stephansen, R. B., Martin, P., Gredler-Grandl, B.
, Manzanilla Pech, C. I. V., Sahana, G., Ducrocq, V., Baes, C. F., Schenkel, F. S., Veerkamp, R.
& Lassen, J. (2022).
Novel genetic parameters to improve gRFI in dairy cattle using big data from multiple lactations and countries. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/14_014.pdf
Saintilan, R., Croiseau, P., Baur, A., Croue, I., Ducrocq, V.
, Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022).
Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). I
Proceedings of the 2022 Interbull Meeting (s. 18-22). Interbull Bulletin Bind 57
https://journal.interbull.org/index.php/ibRome, H. J. S., Chu, T. T., Marois, D., Huang, C-H.
, Madsen, P. & Jensen, J. (2022).
Estimating environmental direct-maternal covariance in real data – illustration on broilers. I
WCGALP 2022 Programme Book Wageningen Academic Publishers.
https://wcgalp.com/wp-content/uploads/2022/07/e-WCGALP22-programme-booklet.pdf
Ostersen, T., Henryon, M.
, Guo, X., Christensen, O. F., Su, G. & Sørensen, A. C. (2022).
Non-genetic correlations between production traits and litter traits in pigs are important to account for. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/68_015.pdfMilkevych, V., Karaman, E., Sahana, G., Janss, L., Cai, Z. & Lund, M. S. (2022).
Quantitative trait simulation using MeSCoT software. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/30_009.pdf
Martinez Boggio, G., Meynadier, A., Rupp, R., Allain, C.
, Buitenhuis, A. J. & Marie-Etancelin, C. (2022).
Evidence of genetic links between rumen bacteria and milk somatic cell score in Lacaune dairy sheep. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/66_004.pdfMartinez Boggio, G.
, Christensen, O. F., Legarra, A., Allain, C., Meynadier, A. & Marie-Etancelin, C. (2022).
Rumen bacteria do not provide improved genetic evaluation of dairy traits in sheep. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/05_009.pdfLiu, H., Nielsen, H. M., Kargo, M., Thomasen, J. R., Berg, P., Slagboom, M., Sørensen, A. C.
& Milkevych, V. (2022).
Simulation of animal crossbreeding schemes using ADAM software. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/56_007.pdf
Kempe, R. M., Mehtiö, T., Leino, A-M., Koivula, M., Pitkänen, T. J.
, Stephansen, R. B., Mäntysaari, P., Negussie, E., Pösö, J., Nielsen, U. S., Fikse, W. F., Aamand, G. P. & Lidauer, M. H. (2022).
Single-step genomic prediction for metabolic body weight of Nordic Red dairy cattle. I
WCGALP 2022: Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/14_005.pdfKargo, M., Nielsen, H. M., Østergaard, S., Kring, R. D.
, Slagboom, M., Clasen, J. B. & Thomasen, J. R. (2022).
Should we breed cows like pigs? A new organisation of dairy cattle breeding. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/45_007.pdf
Karaman, E., Milkevych, V., Cai, Z., Janss, L., Sahana, G. & Lund, M. S. (2022).
Genomic prediction with incomplete omics data. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/13_012.pdf
Islam, M. S., Van der Werf, JHJ., Henryon, M.
, Chu, T. T., Wood, B. J. & Hermesch, S. (2022).
Genotyping dead animals improves post-weaning survival of pigs in breeding programs. I
WCGALP2022 Programme book Wageningen Academic Publishers.
https://wcgalp.com/wp-content/uploads/2022/07/e-WCGALP22-programme-booklet.pdfHansen, L. S., Laursen, S. F., Bahrndorff, S.
, Kargo, M., Kristensen, T. N.
, Sahana, G., Sørensen, J. G. & Nielsen, H. M. (2022).
Towards selective breeding in insects – estimating genetic parameters with individual-level phenotypes and pedigree. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/53_010.pdf
Gredler-Grandl, B., Raymond, B., Schopen, G. C. B., Chitneedi, P. K.
, Cai, Z., Manzanilla Pech, C. I. V., Iso-Touru, T., Fischer, D., Bolormaa, S., Chud, T. C. S., Schenkel, F. S., Wang, Y., Li, C., Hailemariam, D., Villanueva, B., Fernandez, A., Kuehn, C.
, Sahana, G., Lidauer, M. ... Bouwman, A. C. (2022).
Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_010.pdfGebreyesus, G., Secher, J. B-M.
, Lund, M. S., Kupisiewicz, K., Ivask, M.
& Su, G. (2022).
Bull effects on in vitro embryo production quality traits are repeatable and heritable. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/21_004.pdf
Croiseau, P., Saintilan, R., Baur, A., Croue, I., Ducrocq, V.
, Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022).
Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_001.pdfBouquet, A. E. R., Slagboom, M., Thomasen, J. R., Friggens, N.
, Kargo, M. & Puillet, L. (2022).
Mechanistic-based prediction of selection response on resilience and feed efficiency traits in dairy cattle. I
WCGALP 2022 Programme book Wageningen Academic Publishers.
https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/09_009.pdf
Barre, P.
, Asp, T., Byrne, S., Casler, M., Faville, M., Rognli, O. A., Roldan-Ruiz, I., Skøt, L. & Ghesquière, M. (2022).
Genomic Prediction of Complex Traits in Forage Plants Species: Perennial Grasses Case. I
Methods in Molecular Biology (s. 521-541). Humana Press Inc. Methods in Molecular Biology Bind 2467
https://doi.org/10.1007/978-1-0716-2205-6_19Sawant, M., Patil, R., Shikhare, T., Nagle, S., Chavan, S., Negi, S.
& Bokde, N. D. (2022).
A Selective Review on Recent Advancements in Long, Short and Ultra-Short-Term Wind Power Prediction.
Energies,
15(21), [8107].
https://doi.org/10.3390/en15218107Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, L., Fei, Z., Städler, T., Xu, S. ... Huang, S. (2022).
Graph pangenome captures missing heritability and empowers tomato breeding.
Nature,
606(7914), 527-534.
https://doi.org/10.1038/s41586-022-04808-9Zhang, H., Wang, K., An, T., Zhu, L., Chang, Y., Lou, W., Liu, L., Guo, G.
, Liu, A., Su, G., Brito, L. F. & Wang, Y. (2022).
Genetic parameters for dairy calf and replacement heifer wellness traits and their association with cow longevity and health indicators in Holstein cattle.
Journal of Dairy Science,
105(8), 6749-6759.
https://doi.org/10.3168/jds.2021-21450Zaalberg, R. M., Nielsen, H. M., Sorensen, A. C., Chu, T. T., Jensen, J. & Villumsen, T. M. (2022).
The Effect of Using Organic or Conventional Sires on Genetic Gain in Organic Pigs: A Simulation Study.
Animals,
12(4), [455].
https://doi.org/10.3390/ani12040455
Yao, Y., Liu, S., Xia, C.
, Gao, Y., Pan, Z., Canela-Xandri, O., Khamseh, A., Rawlik, K., Wang, S.
, Li, B., Zhang, Y., Pairo-Castineira, E., D’Mellow, K.
, Li, X., Yan, Z., Li, C. J., Yu, Y., Zhang, S.
, Ma, L. ... Tenesa, A. (2022).
Comparative transcriptome in large-scale human and cattle populations.
Genome Biology,
23(1), [176].
https://doi.org/10.1186/s13059-022-02745-4Yang, W., Yu, J., Yao, Y., Chen, S., Zhao, B., Liu, S.
, Zhou, L., Fang, L. & Liu, J. (2022).
Comparative immune-relevant transcriptome reveals the evolutionary basis of complex traits.
iScience,
25(12), [105572].
https://doi.org/10.1016/j.isci.2022.105572Wang, B., Li, P., Hou, L., Zhou, W., Tao, W., Liu, C., Liu, K., Niu, P., Zhang, Z.
, Li, Q., Su, G. & Huang, R. (2022).
Genome-wide association study and genomic prediction for intramuscular fat content in Suhuai pigs using imputed whole-genome sequencing data.
Evolutionary Applications,
15(12), 2054-2066.
https://doi.org/10.1111/eva.13496
Sterenborg, R. B. T. M., Galesloot, T. E., Teumer, A., Netea-Maier, R. T.
, Speed, D., Meima, M. E., Visser, W. E., Smit, J. W. A., Peeters, R. P. & Medici, M. (2022).
The effects of common genetic variation in 96 genes involved in thyroid hormone regulation on TSH and FT4 concentrations.
The Journal of Clinical Endocrinology & Metabolism,
107(6), e2276-e2283.
https://doi.org/10.1210/clinem/dgac136Slagboom, M., Milkevych, V., Liu, H., Thomasen, J. R., Kargo, M. & Schmidtmann, C. (2022).
Conservation of local Red cattle breeds by collaboration with a mainstream Red dairy cattle breed.
Livestock Science,
260, [104936].
https://doi.org/10.1016/j.livsci.2022.104936
Shi, L., Wang, L.
, Fang, L., Li, M., Tian, J., Wang, L. & Zhao, F. (2022).
Integrating genome-wide association studies and population genomics analysis reveals the genetic architecture of growth and backfat traits in pigs.
Frontiers in Genetics,
13, [1078696].
https://doi.org/10.3389/fgene.2022.1078696Shende, M. K., Salih, S. Q.
, Bokde, N. D., Scholz, M., Oudah, A. Y. & Yaseen, Z. M. (2022).
Natural Time Series Parameters Forecasting: Validation of the Pattern-Sequence-Based Forecasting (PSF) Algorithm; A New Python Package.
Applied Sciences (Switzerland),
12(12), [6194].
https://doi.org/10.3390/app12126194Schmidtmann, C.
, Slagboom, M., Sørensen, A. C., Hinrichs, D., Thaller, G.
& Kargo, M. (2022).
Short- and long-term consequences of collaboration between Northern European Red dairy and dual-purpose cattle.
Journal of Animal Breeding and Genetics,
139(4), 447-461.
https://doi.org/10.1111/jbg.12672Sammad, A., Zhang, H., Shi, R., Dong, Y., Luo, H., Chen, Z., Liu, L., Guo, G.
, Liu, A. & Wang, Y. (2022).
A Post-GWAS Functional Analysis Confirming Effects of Three BTA13 Genes CACNB2, SLC39A12, and ZEB1 on Dairy Cattle Reproduction.
Frontiers in Genetics,
13, [882951].
https://doi.org/10.3389/fgene.2022.882951Salunke, S., Ahuja, B., Hashmi, M. F., Marriboyina, V.
& Bokde, N. D. (2022).
5D Gauss Map Perspective to Image Encryption with Transfer Learning Validation.
Applied Sciences,
12(11), [5321].
https://doi.org/10.3390/app12115321Raffo, M. A., Sarup, P., Guo, X., Liu, H., Andersen, J. R., Orabi, J., Jahoor, A.
& Jensen, J. (2022).
Improvement of genomic prediction in advanced wheat breeding lines by including additive-by-additive epistasis.
Theoretical and Applied Genetics,
135(3), 965-978.
https://doi.org/10.1007/s00122-021-04009-4
Raffo, M. A., Sarup, P., Andersen, J. R., Orabi, J., Jahoor, A.
& Jensen, J. (2022).
Integrating a growth degree-days based reaction norm methodology and multi-trait modeling for genomic prediction in wheat.
Frontiers in Plant Science,
13, [939448].
https://doi.org/10.3389/fpls.2022.939448
Poulsen, B. G., Ostersen, T.
, Nielsen, B. & Christensen, O. F. (2022).
Predictive performances of animal models using different multibreed relationship matrices in systems with rotational crossbreeding.
Genetics, selection, evolution : GSE,
54, [25].
https://doi.org/10.1186/s12711-022-00714-w
Nagy, I., Veeckman, E., Liu, C., Bel, M. V., Vandepoele, K., Jensen, C. S., Ruttink, T.
& Asp, T. (2022).
Chromosome-scale assembly and annotation of the perennial ryegrass genome.
BMC Genomics,
23(1), [505].
https://doi.org/10.1186/s12864-022-08697-0
