Herold, C., Hooli, B. V., Mullin, K.
, Liu, T., Roehr, J. T.
, Mattheisen, M., Parrado, A. R., Bertram, L., Lange, C. & Tanzi, R. E. (2016).
Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.
Molecular Psychiatry,
21(11), 1608-1612.
https://doi.org/10.1038/mp.2015.218
Sarup, P., Petersen, S. M. M.
, Nielsen, N. C., Loeschcke, V. & Malmendal, A. (2016).
Mild heat treatments induce long-term changes in metabolites associated with energy metabolism in Drosophila melanogaster.
Biogerontology,
17(5), 873-882. Article 873.
https://doi.org/10.1007/s10522-016-9657-5
Chen, M., Pan, D., Ren, H., Fu, J., Li, J.
, Su, G., Wang, A.
, Jiang, L., Zhang, Q. & Liu, J.-F. (2016).
Identification of selective sweeps reveals divergent selection between Chinese Holstein and Simmental cattle populations.
Genetics Selection Evolution,
48(1), 1-12. Article 76.
https://doi.org/10.1186/s12711-016-0254-5
Poulsen, N. A., Rosengaard, A. K., Szekeres, B. D., Gregersen, V. R., Jensen, H. B. & Larsen, L. B. (2016).
Protein heterogeneity of bovine β-casein in Danish dairy breeds and association of rare β-casein F with milk coagulation properties.
Acta Agriculturae Scandinavica, Section A - Animal Science,
66(4), 190-198.
https://doi.org/10.1080/09064702.2017.1342858
Alemu, S. W., Calus, M. P. L., Muir, W. M., Peeters, K., Vereijken, A. & Bijma, P. (2016).
Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior.
Genetics Selection Evolution,
48(1), Article 68.
https://doi.org/10.1186/s12711-016-0247-4
Guo, X., Christensen, O. F., Ostersen, T., Wang, Y.
, Lund, M. S. & Su, G. (2016).
Genomic prediction using models with dominance and imprinting effects for backfat thickness and average daily gain in Danish Duroc pigs.
Genetics Selection Evolution,
48(1), Article 67.
https://doi.org/10.1186/s12711-016-0245-6
Li, B., Fikse, W. F.
, Lassen, J., Lidauer, M. H.
, Løvendahl, P., Mäntysaari, P. & Berglund, B. (2016).
Genetic parameters for dry matter intake in primiparous Holstein, Nordic Red, and Jersey cows in the first half of lactation.
Journal of Dairy Science,
99(9), 7232-7239.
https://doi.org/10.3168/jds.2015-10669
Zhang, Q., Guldbrandtsen, B., Thomasen, J. R., Lund, M. S. & Sahana, G. (2016).
Genome-wide association study for longevity with whole-genome sequencing in 3 cattle breeds.
Journal of Dairy Science,
99(9), 7289-7298.
https://doi.org/10.3168/jds.2015-10697
Mao, X., Johansson, A. M.
, Sahana, G., Guldbrandtsen, B. & De Koning, D.-J. (2016).
Short communication: Imputation of markers on the Bovine X chromosome.
Journal of Dairy Science,
99(9), 7313-7318.
https://doi.org/10.3168/jds.2016-11160
Fan, S.
, Geissmann, Q., Lakatos, E., Lukauskas, S., Ale, A., Babtie, A. C., Kirk, P. D. W. & Stumpf, M. P. H. (2016).
MEANS: Python package for Moment Expansion Approximation, iNference and Simulation.
Bioinformatics,
32(18), 2863-2865.
https://doi.org/10.1093/bioinformatics/btw229
Ismael, A. I. S., Strandberg, E., Berglund, B.
, Kargo, M., Fogh, A.
& Løvendahl, P. (2016).
Genotype by environment interaction for activity based estrus traits in Danish Holstein. In
Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-830-8
Salleh, S. M., Mazzoni, G.
, Höglund, J., Olijhoek, D., Lund, P., Løvendahl, P. & Kadarmideen, H. N. (2016).
Transcritpomics of feed efficiency in Nordic dairy cattle. Abstract from 67th Annual Meeting of the European Federation of Animal Science (EAAP 2016), Belfast, United Kingdom.
Rohde, P. D., Demontis, D., Castro Dias Cuyabano, B., Børglum, A. & Sørensen, P. (2016).
Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes. 1901-1913. Poster session presented at 2nd Annual Danish Bioinformatics Conference, Odense, Denmark.
Zhang, Q., Guldbrandtsen, B., Calus, M. P. L.
, Lund, M. S. & Sahana, G. (2016).
Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships.
Genetics Selection Evolution,
48(1), Article 60.
https://doi.org/10.1186/s12711-016-0238-5
Iddamalgoda, L., Das, P. S., Aponso, A., Sundararajan, V. S.
, Suravajhala, P. & Valadi, J. K. (2016).
Data Mining and Pattern Recognition Models for Identifying Inherited Diseases: Challenges and Implications.
Frontiers in Genetics,
7(AUG), Article 136.
https://doi.org/10.3389/fgene.2016.00136
Ulrich-Lynge, S. L., Juul-Madsen, H. R., Kjærup, R. B., Okimoto, R., Abrahamsen, M., Maurischat, S.
, Sørensen, P. & Dalgaard, T. S. (2016).
Broilers with low serum Mannose-binding Lectin show increased faecal shedding of Salmonella enterica serovar Montevideo.
Poultry Science,
95(8), 1779-1786.
https://doi.org/10.3382/ps/pew101
Rohde, P. D., Demontis, D., Castro Dias Cuyabano, B., Børglum, A. & Sørensen, P. (2016).
Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes.
Genetics (Print),
203(4), 1901-1913.
https://doi.org/10.1534/genetics.116.189498
Edwards, S. M., Sørensen, I. F., Sarup, P., Mackay, T. F. C.
& Sørensen, P. (2016).
Genomic prediction for quantitative traits is improved by mapping variants to gene ontology categories in Drosophila melanogaster.
Genetics,
203(4), 1871-1883.
https://doi.org/10.1534/genetics.116.187161
Pedersen, H. S., Løvendahl, P., Larsen, K. E., Madsen, L. B. & Callesen, H. (2016).
Porcine oocyte mtDNA copy number is high or low depending on the donor.
Zygote,
24(4), 617-623.
https://doi.org/10.1017/S0967199415000611
Rohde, P. D., Demontis, D., Castro Dias Cuyabano, B., Børglum, A. & Sørensen, P. (2016).
Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes. 1901-1913. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Gregersen, V. R., Madsen, L. B., Poulsen, N. A., Thomsen, B., Panitz, F., Stenholt Hansen, M.
, Buitenhuis, A. J., Holm, L.-E., Larsen, L. B. & Bendixen, C. (2016).
Fine mapping of a quantitative trait locus. Poster session presented at 2nd Annual Danish Bioinformatics Conference, Odense, Denmark.
Vanlierde, A., Grelet, C., Gengler, N., Ferris, C. P.
, Sørensen, M. T., Höglund, J., Carter, F.
, Ingvartsen, K. L., Santoro, A., Dardenne, P. & Dehareng, F. (2016).
Potential use of milk MIR spectra to obtain new health phenotypes for dairy cows in the framework of the GplusE project. In
Book of abstracts of the 67th Annual Meeting of the European Federation of Animal Science (67 ed.). Wageningen Academic Publishers.
Groeneveld, L. F., Gregusson, S.
, Guldbrandtsen, B., Hiemstra, S. J., Hveem, K., Kantanen, J., Lohi, H., Stroemstedt, L. & Berg, P. (2016).
Domesticated Animal Biobanking: Land of Opportunity.
PLoS Biology,
14(7), Article e1002523.
https://doi.org/10.1371/journal.pbio.1002523
Kumar, A., Kumar, S., Kumar, U.
, Suravajhala, P. & Gajula, M. N. V. P. (2016).
Functional and structural insights into novel DREB1A transcription factors in common wheat (Triticum aestivum L.): A molecular modeling approach.
Computational Biology and Chemistry,
64, 217-226.
https://doi.org/10.1016/j.compbiolchem.2016.07.008
Ismael, A. I. S., Strandberg, E., Berglund, B.
, Kargo, M., Fogh, A.
& Løvendahl, P. (2016).
Genotype by environment interaction for the interval from calving to first insemination with regard to calving month and geographic location in Holstein cows in Denmark and Sweden. Journal of Dairy Science,
99(7), 5498-5507. Article 10.3168/jds.2015-10820.
https://doi.org/10.3168/jds.2015-10820
Christensen, M. H., Jensen, S. B., Miettinen, J. J.
, Luecke, S., Prabakaran, T., Reinert, L. S., Mettenleiter, T., Chen, Z. J., Knipe, D. M., Sandri-Goldin, R. M., Enquist, L. W.
, Hartmann, R., Mogensen, T. H., Rice, S. A., Nyman, T. A., Matikainen, S.
& Paludan, S. R. (2016).
HSV-1 ICP27 targets the TBK1-activated STING signalsome to inhibit virus-induced type I IFN expression.
EMBO Journal,
35(13), 1385-1399.
https://doi.org/10.15252/embj.201593458
Jimenez Mena, B., Tataru, P., Brøndum, R. F.
, Sahana, G., Guldbrandtsen, B. & Bataillon, T. (2016).
One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome. Biology Letters,
12(7), Article 20160426.
https://doi.org/10.1098/rsbl.2016.0426
Bellucci, A., Edriss, V., Jensen, J. D., Orabi, J., Jahoor, A.
& Jensen, J. (2016).
Genomic Prediction in Spring Barley. Poster session presented at 12th International Barley Genetics Symposium, Minneapolis, United States.
Zhu, Z., Noel, S. J., Difford, G., Al-Soud, W. A., Brejnrod, A. D., Sørensen, S. J.
, Lassen, J., Løvendahl, P. & Højberg, O. (2016).
Community structure of rumen metabolically active bacterial and archaeal communities in dairy cows over the transition period. Poster session presented at INRA - Rowett 2016, Clermont-Ferrand, France.
Noel, S. J., Olijhoek, D., Lassen, J., Løvendahl, P., Lund, P. & Højberg, O. (2016).
Effect of dietary concentrate on rumen fermentation, methane production and the archaeal community of different breeds and feed efficency. Poster session presented at INRA - Rowett 2016, Clermont-Ferrand, France.
Noel, S. J., McLean, F.
, Olijhoek, D., Lassen, J., Løvendahl, P., Lund, P. & Højberg, O. (2016).
Effects of dietary concentrate on rumen fermentation, methane production and the archaeal community in dairy cows of different breeds and feed efficiencies. In
Proceedings: Gut Microbiology - 20 Years & counting. 10th INRA-Rowett Symposium (pp. 139-139).
Zhu, Z., Noel, S. J., Difford, G., Abu Al-Soud, W., Brejnrod, A., Sørensen, J.
, Lassen, J., Løvendahl, P. & Højberg, O. (2016).
The community structure of rumen metabolically active bacterial and archaeal communities in dairy cows over the transition period. In
Proceedings: Gut Microbiology - 20 Years & counting. 10th INRA-Rowett Symposium (pp. 92-92).
Guo, X., Su, G., Christensen, O. F., Janss, L. & Lund, M. S. (2016).
Genome-wide association analyses using a Bayesian approach for litter size and piglet mortality in Danish Landrace and Yorkshire pigs.
BMC Genomics,
17, Article 468.
https://doi.org/10.1186/s12864-016-2806-z
Wang, L., Madsen, P., Sapp, R., Henshall, J., Hawken, R.
, Alemu, S. W., Sørensen, A. C. & Jensen, J. (2016).
Bias due to selective genotyping in genomic prediction using H-BLUP. Poster session presented at XXV World's Poultry Congress (WPC2016), Beijing, China.
Wang, L., Madsen, P., Sapp, R., Henshall, J., Hawken, R.
, Alemu, S. W., Sørensen, A. C. & Jensen, J. (2016).
Bias due to selective genotyping in genomic prediction using H-BLUP. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Esfandyari, H., Bijma, P., Henryon, M.
, Christensen, O. F. & Sørensen, A. C. (2016).
Genomic prediction of crossbred performance based on purebred Landrace and Yorkshire data using a dominance model.
Genetics Selection Evolution,
48(1), Article 40.
https://doi.org/10.1186/s12711-016-0220-2
Katam, R., Sakata, K.
, Suravajhala, P., Pechan, T., Kambiranda, D. M., Naik, K. S., Guo, B. & Basha, S. M. (2016).
Comparative leaf proteomics of drought-tolerant and -susceptible peanut in response to water stress.
Journal of Proteomics,
143, 209-226.
https://doi.org/10.1016/j.jprot.2016.05.031
Hjortø, L., Thomassen, J. R.
, Kargo, M., Sørensen, A. C. & Slagboom, M. (2016).
Mælkeproducenter prioriterer forskellige egenskaber i avlen.
Kvaeg, (6), 48-49.
https://www.landbrugsinfo.dk/Kvaeg/Avl/Sider/KvaegJuni2016_side48.pdf
Li, X., Lund, M. S., Zhang, Q., Costa, C. N., Ducrocq, V.
& Su, G. (2016).
Short communication: Improving accuracy of predicting breeding values in Brazilian Holstein population by adding data from Nordic and French Holstein populations.
Journal of Dairy Science,
99(6), 4574-4579. Article 74482.
https://doi.org/10.3168/jds.2015-10609
Gebreyesus, G., Lund, M. S., Janss, L., Bovenhuis, H.
& Buitenhuis, A. J. (2016).
Fine mapping and genomic prediction for detailed milk protein composition. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Welderufael, B. G., Janss, L., De Koning, D.-J.
, Sørensen, L. P., Løvendahl, P. & Fikse, W. F. (2016).
Joint genetic evaluation of mastitis susceptibility and recovery ability in Holstein cows. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Lund, M. S., van den Berg, I., Ma, P., Brøndum, R. F. & Su, G. (2016).
Review: How to improve genomic predictions in small dairy cattle populations.
Animal,
10(6), 1042-1049.
https://doi.org/10.1017/S1751731115003031
Østergaard, S., Ettema, J. F., Hjortø, L., Pedersen, J.
, Lassen, J. & Kargo, M. (2016).
Avoiding double counting when deriving economic values through stochastic dairy herd simulation.
Livestock Science,
187, 114-124.
https://doi.org/10.1016/j.livsci.2016.03.004
Ashraf, B., Edriss, V., Akdemir, D., Autrique, E., Bonnett, D., Crossa, J.
, Janss, L., Singh, R. & Jannink, J. L. (2016).
Genomic prediction using phenotypes from pedigreed lines with no marker data.
Crop Science,
56(3), 957-964.
https://doi.org/10.2135/cropsci2015.02.0111
Sahana, G., Iso-Touru, T.
, Wu, X., Nielsen, U., de Koning, D.-J.
, Lund, M. S., Vilkki, J.
& Guldbrandtsen, B. (2016).
A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle.
Genetics Selection Evolution,
48(1), Article 35.
https://doi.org/10.1186/s12711-016-0215-z
Bovenhuis, H., Visker, M. H. P. W.
, Poulsen, N. A., Sehested, J., van Valenberg, H. J. F., van Arendonk, J. A. M.
, Larsen, L. B. & Buitenhuis, A. J. (2016).
Effects of the diacylglycerol o-acyltransferase 1 (DGAT1) K232A polymorphism on fatty acid, protein, and mineral composition of dairy cattle milk.
Journal of Dairy Science,
99(4), 3113-3123.
https://doi.org/10.3168/jds.2015-10462
Ismael, A. I. S., Strandberg, E., Berglund, B., Fogh, A.
& Løvendahl, P. (2016).
Seasonality of fertility measured by physical activity traits in Holstein cows.
Journal of Dairy Science,
99(4), 2837-2848.
https://doi.org/10.3168/jds.2015-10067
Gebreyesus, G., Lund, M. S., Janss, L., Poulsen, N. A., Larsen, L. B., Bovenhuis, H.
& Buitenhuis, A. J. (2016).
Short communication: Multi-trait estimation of genetic parameters for milk protein composition in the Danish Holstein.
Journal of Dairy Science,
99(4), 2863-2866.
https://doi.org/10.3168/jds.2015-10501
Rohde, P. D., Krag, K., Loeschcke, V., Overgaard, J., Sørensen, P. & Kristensen, T. N. (2016).
A Quantitative Genomic Approach for Analysis of Fitness and Stress Related Traits in a Drosophila melanogaster Model Population.
International Journal of Genomics,
2016, 1-11. Article 2157494.
https://doi.org/10.1155/2016/2157494
Bertelsen, H. P., Gregersen, V. R., Poulsen, N. A., Nielsen, R. O., Das, A., Madsen, L. B., Buitenhuis, A. J., Holm, L.-E., Panitz, F., Larsen, L. B. & Bendixen, C. (2016).
Detection of genetic variation affecting milk coagulation properties in Danish Holstein dairy cattle by analyses of pooled whole-genome sequences from phenotypically extreme samples (pool-seq).
Journal of Animal Science,
94(4), 1365-1376.
https://doi.org/10.2527/jas.2015-9884
Poulsen, J. B., Lescai, F., Grove, J., Bækvad-Hansen, M., Christiansen, M., Hagen, C. M., Maller, J., Stevens, C., Li, S., Li, Q., Sun, J.
, Wang, J., Nordentoft, M., Werge, T. M.
, Mortensen, P. B., Børglum, A. D., Daly, M., Hougaard, D. M., Bybjerg-Grauholm, J.
& Hollegaard, M. V. (2016).
High-Quality Exome Sequencing of Whole-Genome Amplified Neonatal Dried Blood Spot DNA.
PLOS ONE,
11(4), e0153253. Article e0153253.
https://doi.org/10.1371/journal.pone.0153253
Kargo, M., Hjortø, L., Slagboom, M., Thomasen, J. R., Buitenhuis, A. J., Hein, L., Pedersen, J. & Munk, A. (2016).
SOBcows - Specialized organic breeding goals and breeding schemes within dairy production. Paper presented at Nordic workshop in dairy cattle genetics and genomics, Copenhagen, Denmark.
http://orgprints.org/30151/
Iso-Touru, T.
, Sahana, G., Guldbrandtsen, B., Lund, M. S. & Vilkki, J. (2016).
Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants.
BMC Genetics,
17(1), Article 55.
https://doi.org/10.1186/s12863-016-0363-8
Xia, D., Zhang, S., Nielsen, E., Ivarsen, A. R., Liang, C.
, Li, Q., Thomsen, K., Hjortdal, J. Ø. & Dong, M. (2016).
The Ultrastructures and Mechanical Properties of the Descement's Membrane in Fuchs Endothelial Corneal Dystrophy.
Scientific Reports,
6, Article 23096.
https://doi.org/10.1038/srep23096
Xiang, T., Nielsen, B., Su, G., Legarra, A.
& Christensen, O. F. (2016).
Application of single-step genomic evaluation for crossbred performance in pig.
Journal of Animal Science,
94(3), 936-948.
https://doi.org/10.2527/jas.2015-9930
Olijhoek, D., Hellwing, A. L. F., Løvendahl, P., Lassen, J., Weisbjerg, M. R. & Lund, P. (2016).
No difference in methane production between low and high feed efficient Holstein and Jersey dairy cows at two forage:concentrate ratios. Abstract from 6th Greenhouse Gas and Animal Agriculture Conference, Melbourne, Australia.
Begli, H. E., Torshizi, R. V., Masoudi, A. A., Ehsani, A.
& Jensen, J. (2016).
Longitudinal analysis of body weight, feed intake and residual feed intake in F2 chickens.
Livestock Science,
184, 28-34.
https://doi.org/10.1016/j.livsci.2015.11.018
Hamzic, E., Kjærup, R. B., Mach , N., Minozzi, G., Strozzi, F., Gualdi, V., Williams, J. L., Chen, J., Wattrang, E.
, Buitenhuis, A. J., Juul-Madsen, H. R. & Dalgaard, T. S. (2016).
RNA sequencing based analysis of the spleen transcriptome following the infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.
BMC Genomics,
17(1), Article 82.
https://doi.org/10.1186/s12864-016-2403-1
Schönherz, A. A., Lorenzen, N., Guldbrandtsen, B., Buitenhuis, B. & Einer-Jensen, K. (2016).
Ultra-deep sequencing of VHSV isolates contributes to understanding the role of viral quasispecies.
Veterinary Research,
47(10), Article 10.
https://doi.org/10.1186/s13567-015-0298-5
Sarup, P. M., Jensen, J., Ostersen, T., Henryon, M.
& Sørensen, P. (2016).
Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs.
BMC Genetics,
17(11), Article 11.
https://doi.org/10.1186/s12863-015-0322-9
Rohde, P. D., Madsen, L. S., Arvidson, S. M. N.
, Loeschcke, V., Demontis, D. & Kristensen, T. N. (2016).
Testing candidate genes for attention-deficit/hyperactivity disorder in fruit flies using a high throughput assay for complex behavior.
Fly,
10(1), 25-34. Article 1158365.
https://doi.org/10.1080/19336934.2016.1158365
Thodberg, K., Sørensen, L. U., Videbech, P. B.
, Haun Poulsen, P., Houbak, B., Damgaard, V., Keseler, I.
, Edwards, D. & Christensen, J. W. (2016).
Behavioral Responses of Nursing Home Residents to Visits From a Person with a Dog,a Robot Seal or a Toy Cat.
Anthrozoos,
29(1), 107-121.
https://doi.org/10.1080/08927936.2015.1089011
Ashraf, B. H., Byrne, S., Fé, D., Czaban, A., Asp, T., Pedersen, M. G., Lenk, I., Roulund, N., Didion, T., Jensen, C. S.
, Jensen, J. & Janss, L. L. (2016).
Estimating genomic heritabilities at the level of family-pool samples of perennial ryegrass using genotyping-by-sequencing.
Theoretical and Applied Genetics,
129(1), 45-52.
https://doi.org/10.1007/s00122-015-2607-9