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Publications

Peer-reviewed publications at QGG

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Ma, X., Li, P. H., Zhu, M. X., He, L. C., Sui, S. P., Gao, S., Su, G. S., Ding, N. S., Huang, Y., Lu, Z. Q., Huang, X. G. & Huang, R. H. (2018). Genome-wide association analysis reveals genomic regions on Chromosome 13 affecting litter size and candidate genes for uterine horn length in Erhualian pigs. Animal, 12(12), 2453-2461. https://doi.org/10.1017/S1751731118000332
Zhang, Z., Zhang, Q., Xiao, Q., Sun, H., Gao, H., Yang, Y., Chen, J., Li, Z., Xue, M., Ma, P., Yang, H., Xu, N., Wang, Q. & Pan, Y. (2018). Distribution of runs of homozygosity in Chinese and Western pig breeds evaluated by reduced-representation sequencing data. Animal Genetics, 49(6), 579-591. https://doi.org/10.1111/age.12730
Colli, L., Milanesi, M., Talenti, A., Bertolini, F., Chen, M., Crisà, A., Daly, K. G., Del Corvo, M., Guldbrandtsen, B., Lenstra, J. A., Rosen, B. D., Vajana, E., Catillo, G., Joost, S., Nicolazzi, E. L., Rochat, E., Rothschild, M. F., Servin, B., Sonstegard, T. S. ... The ADAPTMAP consortium (Vivi Hunnicke Nielsen; member) (2018). Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes. Genetics Selection Evolution, 50(1), Article 58. https://doi.org/10.1186/s12711-018-0422-x
Bertolini, F., Servin, B., Talenti, A., Rochat, E., Kim, E. S., Oget, C., Palhière, I., Crisà, A., Catillo, G., Steri, R., Amills, M., Colli, L., Marras, G., Milanesi, M., Nicolazzi, E., Rosen, B. D., Van Tassell, C. P., Guldbrandtsen, B., Sonstegard, T. S. ... The ADAPTMAP consortium (Vivi Hunnicke Nielsen; member) (2018). Signatures of selection and environmental adaptation across the goat genome post-domestication. Genetics Selection Evolution, 50, 57. https://doi.org/10.1186/s12711-018-0421-y
Poulsen, N. A., C. Robinson, R., Buitenhuis, A. J., Sundekilde, U. K., Lemay, D. G., Barile, D., Larsen, L. B. & Holm, L.-E. (2018). GWAS and expression of candidate genes for oligosaccharide synthesis in Danish dairy breeds. Abstract from 15th International Symposium on Milk Genomics and Human Health, Sacramento, California, United States.
Forsberg, E. M., Hanssen, A. B., Nielsen, H. M. & Olesen, I. (2018). Patent Ethics: The Misalignment of Views Between the Patent System and the Wider Society. Science and Engineering Ethics, 24(5), 1551-1576. https://doi.org/10.1007/s11948-017-9956-5
Sorg, D., Difford, G. F., Mühlbach, S., Kuhla, B., Swalve, H. H., Lassen, J., Strabel, T. & Pszczola, M. (2018). Comparison of a laser methane detector with the GreenFeed and two breath analysers for on-farm measurements of methane emissions from dairy cows. Computers and Electronics in Agriculture, 153, 285-294. https://doi.org/10.1016/j.compag.2018.08.024
Vagndorf, N. J., Kristensen, P. S., Andersen, J. R., Jahoor, A. & Orabi, J. (2018). Marker-assisted plant breeding in wheat. In Y. O. Çiftçi (Ed.), Next Generation Plant Breeding (pp. 107). InTechOpen. https://doi.org/10.5772/intechopen.74724
Villumsen, T. M. & Lund, M. S. (2018). Anvendelse af auktionsdata i minkavlen. In S. H. Møller & J. Malmkvist (Eds.), Temadag om aktuel minkforskning: DCA Rapport nr. 129, September 2018 (pp. 30-36). http://web.agrsci.dk/djfpublikation/index.asp?action=show&id=1272
Larsen, M., Buitenhuis, A. J., Hedemann, M. S. & Sehested, J. (2018). Prediction of individual dairy cow performance using LC-MS metabolome spectra. In R. Baumont, M. Silberberg & I. Cassar-Malek (Eds.), Proceedings of the 10th International Symposium on the Nutrition of Herbivores (Vol. 9). Article 623 Cambridge University Press.
Ma, P., Huang, J., Gong, W., Li, X., Gao, H., Zhang, Q., Ding, X. & Wang, C. (2018). The impact of genomic relatedness between populations on the genomic estimated breeding values. Journal of Animal Science and Biotechnology, 9(1), Article 64. https://doi.org/10.1186/s40104-018-0279-4
Wang, X., Gao, H., G. Gebremedhin, K., Schmidt Bjerg, B., Van Os, J., Tucker, C. B. & Zhang, G. (2018). A predictive model of equivalent temperature index for dairy cattle (ETIC). Journal of Thermal Biology, 76, 165-170. https://doi.org/10.1016/j.jtherbio.2018.07.013
Cao, L. (2018). Effect of G×E on Breeding Cooperation Using Genomic Selection. Abstract from 12th World Conference on Animal Production (WCAP) & 2018 ASAS-CSAS Annual Meeting, Vancouver, British Columbia, Canada.
Mukherjee, A., Mukherjee, S., Dhakal, R., Mech, M., Longkumer, I., Haque, N., Vupru, K., Khate, K., Jamir, I. Y., Pongen, P., Rajkhowa, C., Mitra, A., Guldbrandtsen, B. & Sahana, G. (2018). High-density Genotyping reveals Genomic Characterization, Population Structure and Genetic Diversity of Indian Mithun (Bos frontalis). Scientific Reports, 8(1), Article 10316. https://doi.org/10.1038/s41598-018-28718-x
Rohde, P. D., Sørensen, I. F. & Sørensen, P. (2018). Genomic Feature Prediction Models - Improved Prediction Accuracy by Joint Marker Estimation. Poster session presented at ESHG 2018: European Society of Human Genetics, Milano, Italy.
Christensen, O. F., Kongsted, H. & Lund, M. S., (2018). Evaluering af avl for LG5, No. 2018-760-000656, 35 p., Jun 01, 2018.
López-Correa, R. D., Peñagaricano, F., Rovere, G. & Urioste, J. I. (2018). Genetic parameter estimation for long endurance trials in the Uruguayan Criollo horse. Journal of Animal Breeding and Genetics, 135(3), 186-193. https://doi.org/10.1111/jbg.12324
Bouwman, A. C., Daetwyler, H. D., Chamberlain, A. J., Ponce, C. H., Sargolzaei, M., Schenkel, F. S., Sahana, G., Govignon-Gion, A., Boitard, S., Dolezal, M., Pausch, H., Brøndum, R. F., Bowman, P. J., Thomsen, B., Guldbrandtsen, B., Lund, M. S., Servin, B., Garrick, D. J., Reecy, J. ... Hayes, B. J. (2018). Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nature Genetics, 50(3), 362-367. https://doi.org/10.1038/s41588-018-0056-5
Karaman, E., Lund, M. S., Anche, M. T., Janss, L. & Su, G. (2018). A two-step approach to account for heterogeneous (co)variances across the genome using GBLUP. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Su, G., Madsen, P., Nielsen, B., Ostersen, T., Shirali, M., Jensen, J. & Christensen, O. F. (2018). Efficiency of group records for prediction of breeding values. In Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Methods and Tools - Prediction 3 (pp. 1-6). Article 11.565 WCGALP. http://www.wcgalp.org/proceedings/2018/efficiency-group-records-prediction-breeding-values
Madsen, P., Milkevych, V., Gao, H., Christensen, O. F. & Jensen, J. (2018). DMU - A Package for Analyzing Multivariate Mixed Models in Quantitative Genetics and Genomics. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Zaalberg, R. M., Shetty, N., Janss, L. & Buitenhuis, A. J. (2018). Genetic analysis of Fourier transform infrared milk spectra for Danish Holstein and Danish Jersey. 302. Abstract from The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018). Genetic variance in macro-environmental sensitivity in growth rate in Danish Duroc pigs. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2018). Genome-wide association study of the de novo synthesized milk fatty acids based on Dutch, Danish and Chinese Holstein Friesians. 141. Abstract from The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Mesbah-Uddin, M., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2018). Genotype call for chromosomal deletions using read-depth from whole genome sequence variants in cattle. Poster session presented at The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Hosseini-Vardanjani, S. M., Mahdi Shariati, M., Janss, L., Christensen, O. F., Anche, M. T. & Lund, M. S. (2018). Accounting for breed origin of alleles increase accuracy of genomic prediction in admixed populations. Poster session presented at World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand.
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018). Adjusting for Macro-Environmental Sensitivity in Growth rate of Danish Landrace and Duroc Pigs. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Slagboom, M., Wallenbeck, A., Rydhmer, L., Thomasen, J. R. & Kargo, M. (2018). Breeding Goals for Organic Dairy Farming in Denmark Based on the Principles of Organic Agriculture. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Difford, G., Gebreyesus, G., Løvendahl, P., Buitenhuis, A. J., Lassen, J., Guldbrandtsen, B. & Sahana, G. (2018). Can rumen microbes improve prediction of subclinical ketosis in dairy cows? In S. C. (Ed.), Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science (Vol. 24). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-871-1
Guldbrandtsen, B., Nielsen, V. H. & Schönherz, A. (2018). Case Studies using Molecular Data in Breed Conservation. Abstract from Workshop on Genomic Selection. Espoo 2018, Helsinki, Finland.
Slagboom, M., Mulder, H. A., Sørensen, A. C., Hjortø, L., Thomasen, J. R. & Kargo, M. (2018). Effects of specific breeding lines for organic dairy production in Denmark. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Milkevych, V., Madsen, P., Gao, H. & Jensen, J. (2018). Efficient block-Gibbs sampling in variance component estimation for predictions which combine phenotypic and genomic information. 468. Abstract from ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gao, H., Madsen, P., Aamand, G. & Jensen, J. (2018). Estimation of variance components in populations under genomic selection. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Boichard, D. A., Boussaha, M., Capitan, A., Rocha, D., Hoze, C., Sanchez, M.-P., Tribout, T., Letaief, R., Croiseau, P., Grohs, C., Li, W., Harland, C., Charlier, C., Lund, M. S., Sahana, G., Georges, M., Barbier, S., Coppieters, W., Fritz, S. & Guldbrandtsen, B. (2018). Experience from large scale use of the EuroGenomics custom SNP chip in cattle. In Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Molecular Genetics 4 (Vol. 11). Article 11.675 http://www.wcgalp.org/proceedings/2018/experience-large-scale-use-eurogenomics-custom-snp-chip-cattle
Marete, A. G., Janss, L., Guldbrandtsen, B., Hoze, C., Sahana, G., Boichard, D. A. & Lund, M. S. (2018). Exploring non-additive variance using genome-wide dense SNP in four French and Nordic dairy cattle breeds. In Proceedings of the World Congress on Genetics Applied to Livestock Production Article 70
Yan, X., Liu, A., Dong, G., Guo, G., Li, X., Su, G. & Wang, Y. (2018). Genetic analysis of productive life in Chinese Holstein population. Abstract from 5th International Conference on Quantitative Genetics, Madison, United States.
Zhang, H., Xu, W., Li, X., Luo, H., Liu, A. & Wang, Y. (2018). Genetic analysis of skinfold thickness and its association with body condition score, and milk production traits in Chinese Holstein population. Abstract from ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gajjar, S. G., Guldbrandtsen, B., Nayee, N. G., Sudhakar, A., Trivedi, K. R., Lund, M. S. & Sahana, G. (2018). Genetic composition, divergence, admixture and use of ancestry informative markers in indigenous breeds of cattle in India. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Challenges - Species Conservation Article 585 http://www.wcgalp.org/archive?f%5Bauthor%5D=14045
Liu, A., Wang, Y., Lund, M. S. & Su, G. (2018). Genome-wide association study for female fertility traits in Chinese Holstein population. Abstract from 5th International Conference on Quantitative Genetics, Madison, United States.
Luo, H., Xu, W., Liu, A., Li, X., Liu, L. & Wang, Y. (2018). Genome-wide association study for rectal temperature in Chinese Holstein population. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 Article 587 http://www.wcgalp.org/system/files/proceedings/2018/genome-wide-association-study-rectal-temperature-chinese-holstein-population.pdf
Nayee, N. K., Su, G., Gajjar, S. G., Sahana, G., Saha, S., Trivedi, K. R., Guldbrandtsen, B. & Lund, M. S. (2018). Genomic prediction by single-step genomic BLUP using cow reference population in Holstein crossbred cattle in India. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Nayee, N. K., Su, G., Gajjar, S., Sahana, G., Saha, S., Trivedi, K. R., Guldbrandtsen, B. & Lund, M. S. (2018). Genomic prediction by single-step genomic BLUP using cow reference population in Holstein crossbred cattle in India. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Theory to Application - 1 (Vol. 11). Article 11.411 http://www.wcgalp.org/proceedings/2018/genomic-prediction-single-step-genomic-blup-using-cow-reference-population-holstein
Su, G., Mansan Gordo, D. G., Li, B., Aamand, G., Lund, M. S. & Lassen, J. (2018). Genomic prediction for dry matter intake in Nordic Holsteins. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 (Vol. Volume Electronic Poster Session - Methods and Tools - Prediction 2). Article 474 WCGALP. http://www.wcgalp.org/system/files/proceedings/2018/genomic-prediction-dry-matter-intake-nordic-holsteins.pdf
Ankamah-Yeboah, T., Janss, L., Hjortshøj, R. L. & Rasmussen, S. K. (2018). Genomic Selection in Winter Barley: A comparison of One-Step and Two-Step Approach. Abstract from Plant Biology Europe 2018, Copenhagen, Denmark.
Guldbrandtsen, B., Cai, Z., Sahana, G., Villumsen, T. M., Asp, T., Thomsen, B. & Lund, M. S. (2018). Genomics using the Assembly of the Mink Genome. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Molecular Genetics 1 Article 539 http://www.wcgalp.org/proceedings/2018/genomics-using-assembly-mink-genome