Publications

Peer-reviewed publications at QGG

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Li, H., Zhang, H., Chang, F., Wang, X., Shang, Y., Zhang, X., Zhou, J., Chen, J. & Li, Y. (2026). Depth-dependent responses of soil microorganisms to the interaction of soil salinity and straw interlayer. Soil and Tillage Research, 256, Article 106894. https://doi.org/10.1016/j.still.2025.106894

Ahmad, A., Gebreyesus, G., Wold, J. P., Sonesson, A. K., Berg, P. & Difford, G. F. (2026). High-throughput NIR-based phenotyping for genomic prediction of feed intake and production traits in Atlantic Salmon. Aquaculture, 611, Article 743006. https://doi.org/10.1016/j.aquaculture.2025.743006

Liu, X., Wang, T., Zheng, Z., Dong, C., Liu, W., Niu, Z., Yang, Y., Wu, X., Qiu, Q., Yang, Y., Li, K., Lenstra, J. A., Yan, P., Kang, M., Li, B., Fang, L. & Liu, J. (2025). A 14-bp motif in the KIT active promoter region is critical for melanin accumulation in yaks, mice, and humans. BMC Biology, 23(1), Article 208. https://doi.org/10.1186/s12915-025-02311-x

Yin, H., Zhao, Q., Yang, L., Yi, G., Yao, W., Fang, L. & Bai, L. (2025). A multi-tissue and -breed catalogue of chromatin conformations and their implications in gene regulation in pigs. BMC Genomics, 26(1), Article 484. https://doi.org/10.1186/s12864-025-11490-4

Hanini, A. & Beljadid, A. (2025). A semi-implicit method for modeling salinity and temperature in variable-density flow. Mathematics and Computers in Simulation, 238, 222-239. https://doi.org/10.1016/j.matcom.2025.04.032

Ssemakula, F., Nawoya, S., Kunyanga, C. N., Akol, R., Nakimbugwe, D., Bett, R. C., Karstoft, H., Bjerge, K., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Emerging technologies for fast determination of nutritional quality and safety of insects for food and feed: A review. Computers and Electronics in Agriculture, 239, Article 111126. https://doi.org/10.1016/j.compag.2025.111126

Berg, J. A., Sævik, B. K., Trangerud, C., Madsen, P. & Lingaas, F. (2025). Genetic analyses of lumbosacral transitional vertebra and hip dysplasia in nine dog breeds in Norway. Acta Veterinaria Scandinavica, 67(1), Article 25. https://doi.org/10.1186/s13028-025-00810-z

Gautason, E., Þórarinsdóttir, Þ. & Sahana, G. (2025). Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle. Journal of Applied Genetics, 66(4), 1053-1064. Article e65550. https://doi.org/10.1007/s13353-025-00978-0

Tabrizi, F., Rosén, J., Grönvall, H., William-Olsson, V. R., Arner, E., Magnusson, P. K., Palm, C., Larsson, H., Viktorin, A., Bernhardsson, J., Björkdahl, J., Jansson, B., Sundin, Ö., Zhou, X., Speed, D. & Åhs, F. (2025). Heritability and polygenic load for comorbid anxiety and depression. Translational Psychiatry, 15(1), 98. Article 98. https://doi.org/10.1038/s41398-025-03325-3

Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R., Woomer, J., Verges, V., McDonald, A. G., McMahan, C. S., DeBolt, S., Robertson, D. J. & Sekhon, R. S. (2025). High-density Phenotype Data of Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize. Scientific Data, 12(1), Article 1721. https://doi.org/10.1038/s41597-025-06008-2

Hosseinzadeh, S., Rafat, S. A. & Fang, L. (2025). Integrated TWAS, GWAS, and RNAseq results identify candidate genes associated with reproductive traits in cows. Scientific Reports, 15(1), 1932. Article 1932. https://doi.org/10.1038/s41598-024-82448-x

Wang, X., Si, J., Wang, Y., Fang, L., Zhang, Z. & Zhang, Y. (2025). Integrating gene expression data via weighted multiple kernel ridge regression improved accuracy of genomic prediction. Genetics Selection Evolution, 57(1), Article 48. https://doi.org/10.1186/s12711-025-00997-9

An, B., Liu, P., Yang, Z., Ying, F., Liu, D., Wen, J. & Zhao, G. (2025). Integrative transcriptomics and metabolomics reveal neuroendocrine-lipid crosstalk and adenosine signaling in broiler under heat stress. BMC Genomics, 26(1), Article 699. https://doi.org/10.1186/s12864-025-11881-7

Bouquet, A., Slagboom, M., Thomasen, J. R., Kargo, M., Friggens, N. C. & Puillet, L. (2025). Interfacing mechanistic and breeding scheme simulation to predict selection response on lactation efficiency in dairy cows under different nutritional environments. Genetics Selection Evolution, 57(1), Article 68. https://doi.org/10.1186/s12711-025-01013-w

Chen, J., Huang, R., Ma, J., Su, G., Huang, M., Zhou, W., Liu, C., Liu, Q., Li, P. & Zhao, Q. (2025). Investigating the genetic imprint of long body length, high lean meat rate, high fertility and long gestation period in Danish Landrace pigs. BMC Genomics, 26(1), Article 869. https://doi.org/10.1186/s12864-025-12092-w

Xi, Y., Qi, J., Yang, Z., Zeng, Y., Zhang, H., Tao, Q., Xu, M., Huang, A., Hu, S., Han, C., Bai, L., Hu, J., Wang, J., Li, L., Fang, L. & Liu, H. (2025). Mapping multitissue regulatory variants reveals a liver-centric coexpression network associated with duck egg-laying performance. Genome Research, 35(10), 2211-2225. https://doi.org/10.1101/gr.280345.124

Zhu, X., Li, C., Luo, C., Bai, Z., Shu, D., Chen, P., Ren, J., Song, R., Fang, L., Qu, H., Wang, Y. & Hu, X. (2025). Mapping the regulatory genetic landscape of complex traits using a chicken advanced intercross line. Nature Communications, 16(1), Article 5841. https://doi.org/10.1038/s41467-025-60834-x

Hjelholt, A. J., Gholipourshahraki, T., Bai, Z., Shrestha, M., Kjolby, M., Sørensen, P. & Rohde, P. D. (2025). mLeveraging genetic correlations to prioritize drug groups for repurposing in type 2 diabetes. Pharmacogenomics Journal, 25(6), Article 33. https://doi.org/10.1038/s41397-025-00392-z

Yin, H., Yang, L., Zhao, Q., Yao, W., Teng, J., Gao, Y., Xu, Z., Lin, Q., Diao, S., Liu, X., Zhao, F., Zhou, Z., Wang, Q., Li, J., Zhang, Z., Zhou, H., Groenen, M. A. M., Madsen, O., Bai, L. ... Li, K. (2025). Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs. BMC Biology, 23(1), Article 188. https://doi.org/10.1186/s12915-025-02279-8

Ye, X., Sahana, G., Lund, M. S., Li, B. & Cai, Z. (2025). Network analyses unraveled the complex interactions in the rumen microbiota associated with methane emission in dairy cattle. Animal Microbiome, 7(1), Article 24. https://doi.org/10.1186/s42523-025-00386-z

Tu, J. H., Liu, B. G., Lin, B. J., Liu, H. C., Guo, S. C., Ouyang, Q. Y., Fang, L. Z., He, X., Song, Z. H. & Zhang, H. H. (2025). Single-cell transcriptomic atlas of the chicken cecum reveals cellular responses and state shifts during Eimeria tenella infection. BMC Genomics, 26(1), Article 141. https://doi.org/10.1186/s12864-025-11302-9

Ollivier, R., Robin, S., Galland, M., Shih, P. Y., Morlière, S., Paulmann, M. K., Gershenzon, J., Kunert, G., Pilet-Nayel, M. L., Simon, J. C. & Sugio, A. (2025). Transcriptomic analysis reveals candidate molecular pathways involved in pea (Pisum sativum L.) resistance to pea aphid (Acyrthosiphon pisum Harris) biotypes. BMC Genomics, 26(1), Article 580. https://doi.org/10.1186/s12864-025-11742-3

Chen, L., Li, H., Teng, J., Wang, Z., Qu, X., Chen, Z., Cai, X., Zeng, H., Bai, Z., Li, J., Pan, X., Yan, L., Wang, F., Lin, L., Luo, Y., Sahana, G., Lund, M. S., Ballester, M., Crespo-Piazuelo, D. ... Yi, G. (2025). Construction of a Multitissue Cell Atlas Reveals Cell-Type-Specific Regulation of Molecular and Complex Phenotypes in Pigs. Advanced Science, e04961. Advance online publication. https://doi.org/10.1002/advs.202504961

Þórarinsdóttir, Þ., Eiriksson, J., Gautason, E., Thomasen, J. R. & Liu, H. (2025). Evaluating genomic breeding programs for a small dairy cattle population with widespread use of private bulls. Journal of Dairy Science, 108(11), 12450-12462. https://doi.org/10.3168/jds.2025-26592

Schneider, H., Lajevardi, R. K., Bjerring, M., Løvendahl, P., Lund, M. S. & Villumsen, T. M. (2025). Genetic parameters for enteric methane traits and their genetic connection with milk production in Danish Holstein cattle. Journal of Dairy Science, 108(11), 12519-12530. https://doi.org/10.3168/jds.2025-26853

Bai, Z., Chen, W., Cai, Z. & Sahana, G. (2025). Genomic insights into young stock survival in Danish Jersey cattle: A breed-specific QTL on chromosome 10 and its regulatory potential. Genomics, 117(6), Article 111134. https://doi.org/10.1016/j.ygeno.2025.111134, https://doi.org/10.1016/j.ygeno.2025.111134

Johansen, N. H., Bellucci, A., Hansen, P. B., Marum, P., Amdahl, H., Gylstrøm, K. H., Rognli, O. A., Kemešytė, V., Brazauskas, G., Greve, M., Persson, C., Isolahti, M., Helgadóttir, Á., Aavola, R., Asp, T. & Ramstein, G. P. (2025). Genomic prediction of agronomic traits in perennial ryegrass (Lolium perenne L.) and genotype x environment interactions at the limit of the species distribution. Theoretical and Applied Genetics, 138(11), Article 281. https://doi.org/10.1007/s00122-025-05064-x

Yang, Z., Liu, P., Ying, F., Liu, D., Wen, J., Zhao, G. & An, B. (2025). The heart and liver transcriptome responses to acute and chronic heat stress in broilers. Poultry Science, 104(11), Article 105632. https://doi.org/10.1016/j.psj.2025.105632

Skovbjerg, C. K., Sarup, P., Wahlström, E. M., Jensen, J. D., Olesen, L., Orabi, J., Jensen, J., Ramstein, G. P. & Jahoor, A. (2025). Genomic prediction in a small barley population can benefit from training on related populations. G3 (Bethesda, Md.). Advance online publication. https://doi.org/10.1093/g3journal/jkaf218, https://doi.org/10.1093/g3journal/jkaf218

Dai, D., Si, J., Jiang, L., Han, B., Wang, K., Wang, X., Yan, S., Yin, Y., Chen, W., Mao, H., Pauciullo, A., Li, S. T., Fang, L. & Zhang, Y. (2025). Comparative Single-Cell Transcriptomic Landscape Reveals the Regulatory Mechanisms of Lactation during Selective Breeding in Asian Water Buffalo. Advanced Science, 12(37), Article e08847. https://doi.org/10.1002/advs.202508847

Han, B., Li, H., Zheng, W., Zhang, Q., Chen, A., Zhu, S., Shi, T., Wang, F., Zou, D., Song, Y., Ye, W., Du, A., Fu, Y., Jia, M., Bai, Z., Yuan, Z., Liu, W., Tuo, W., Hope, J. C. ... Sun, D. (2025). A multi-tissue single-cell expression atlas in cattle. Nature Genetics, 57(10), 2546-2561. https://doi.org/10.1038/s41588-025-02329-5

Milkevych, V. & Villumsen, T. M. (2025). Fault detection in the sniffer-based gas emission measurement systems. Computers and Electronics in Agriculture, 237, Article 110652. https://doi.org/10.1016/j.compag.2025.110652

Wang, X., Yuan, Y., Pei, F., Yang, J., Wang, C., Bao, P., Zhao, X., Liu, H., Gao, H., Hou, M., Gao, Y., Li, J., Hao, D. & Li, R. (2025). Integrated Analysis of Proteomics and Metabolomics for Heat Stress in Chinese Holstein Cows. Animals, 15(20), Article 3049. https://doi.org/10.3390/ani15203049

Guillenea Golovanevsky, A. C., Cuyabano, B. C. D., Croiseau, P., Lund, M. S. & Karaman, E. (2025). QTL detection in multi-breed cattle populations including crossbred animals: a simulation study. Animal, 19(10), Article 101639. https://doi.org/10.1016/j.animal.2025.101639

Pei, Y., Zhao, X., Du, W., Diao, W., Zhang, W., Xiong, B., Ramstein, G. P., Ottosen, C. O., Cheng, C., Zhao, Q., Li, J., Lou, Q., Chen, J. & Yu, X. (2025). Synthetic allopolyploidy unveils hybridization-driven transcriptional reprogramming underlying thermal adaptation in Cucumis. Plant Journal, 124(1), Article e70507. https://doi.org/10.1111/tpj.70507

Adamsen, A. P. S. (Ed.), Manevski, K. (Ed.), Lærke, P. E. (Ed.), Ugilt Larsen, S., Jørgensen, U., Olesen, J. E., Andersen, M. N., Bay, S. S., Hutchings, N., Hansen, E. M., Munkholm, L. J., Børgesen, C. D., Thomsen, I. K., Elsgaard, L., Petersen, S. O., Toda, M., Ntinyari, W., Sørensen, P., Rasmussen, C. ... Nielsen, H. M. (2025). Virkemidler til reduktion af klimagasser i landbruget 2025. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Gensemer, C., Petrucci, T., Beck, T., Daylor, V., Griggs, M., Griggs, C., Weintraub, A., Byerly, K., Guo, L., Morningstar, J., Kornblau, I., Biggs, R., Moore, K., Koren, N., Hastings, C., Oberlies, E., Zientara, E. R., Devey, E., Dooley, S. ... Norris, R. A. (2025). KLK15 alters connective tissues in hypermobile Ehlers-Danlos syndrome. iScience, 28(9), Article 113343. https://doi.org/10.1016/j.isci.2025.113343

van der Heide, M. E. & Janss, L., (2025). Estimated usage of organic and non-organic feed and protein-rich feedstuff for organic pig and poultry in 2024, No. 2025-0830467, 22 p., Sept 10, 2025. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Mouritzen, T. W., Meurer, K. H. E., Bornhofen, E., Janss, L., Weih, M. & Andersen, S. U. (2025). Faba bean genetics and crop growth models – progress to date and opportunities for integration. Plant and Soil, 514(1), 47-64. https://doi.org/10.1007/s11104-025-07459-7

Tariku, H. G., Nielsen, H. M., Walusimbi, S., Hansen, L. S., Gebreyesus, G., Rugira-Kugonza, D., Bett , R. C., Nakimbugwe, D., Geoffrey, S. & Kassie, G. T. (2025). Farmers’ Preferences for Larval Traits in Small-Scale Black Soldier Fly (Hermetia illucens) Production System [019]. 43-43. Poster session presented at BSFcon 2025, Cambridge, United Kingdom.

Nielsen, H. M., Hansen, L. S., Zaalberg, R. M., Gebreyesus, G., Kargo, M., Noer, N. K., Schou, T. M., Jensen, K., Berggreen, I. E., Nørgaard, J. V., Henryon, M. & Kristensen, T. N. (2025). FLYBREED: Efficient production of the black soldier fly through selective breeding [018]. 36-36. Abstract from BSFcon 2025, Cambridge, United Kingdom.

Furtado, B. U., Nagy, I., Tyburski, J., Roulund, N., Asp, T. & Hrynkiewicz, K. (2025). Functional Analysis of Lolium perenne L. in Response to Fungal Endophyte Inoculation and Salinity Stress. Journal of Plant Growth Regulation, 44(9), 5593-5615. https://doi.org/10.1007/s00344-025-11782-9

Dai, S., Zhao, P., Li, W., Peng, L., Jiang, E., Du, Y., Zhang, W., Dai, X., Yang, L., Li, Z., Xu, L., Lan, X., Lyu, W., Yang, L., Fang, L., Liu, G. E. & Zhou, Y. (2025). Global Pangenome Analysis Highlights the Critical Role of Structural Variants in Cattle Improvement and Identifies a Unique Event as a Novel Enhancer in IGFBP7⁺ Cells. Molecular Biology and Evolution, 42(9), Article msaf205. https://doi.org/10.1093/molbev/msaf205

Hein, L., Thomasen, J. R., Kargo, M., Nielsen, H. M., Bouquet, A. E. R. & Liu, H. (2025). Impact of increased heterozygosity on Nordic Total Merit traits in dairy cattle: Potential for mating strategy optimization. Journal of Dairy Science, 108(9), 9946-9955. https://doi.org/10.3168/jds.2024-26200

Hansen, L. S. (2025). INSECT-IMP - advancing farmed insect breeding through interdisciplinary collaboration [061] - Sponsor Talk. 11-11. Abstract from BSFcon 2025, Cambridge, United Kingdom.

Hof, J. P. & Speed, D. (2025). LDAK-KVIK performs fast and powerful mixed-model association analysis of quantitative and binary phenotypes. Nature Genetics, 57(9), 2116-2123. https://doi.org/10.1038/s41588-025-02286-z

Balding, D. J. & Speed, D. (2025). Recent Statistical Innovations in Human Genetics. Annals of Human Genetics, 89(5), 241-254. https://doi.org/10.1111/ahg.12606

Iso-Touru, T., Fischer, D., Panitz, F., Taponen, S., Cai, Z., Sahana, G., Tapio, I. & Vilkki, J. (2025). Response of primary mammary epithelial cells to pathogen challenge in dairy cows with divergent genomic breeding values for udder health. Genomics, 117(5), Article 111102. https://doi.org/10.1016/j.ygeno.2025.111102

Yu, X., Faggion, S., Liu, Y., Wang, B., Zeng, Q., Lu, C., Hu, J., Bargelloni, L., Fang, L. & Bao, Z. (2025). Role of multi-omics in aquaculture genetics and breeding: current status and future perspective. Science China Life Sciences, 68(9), 2591-2604. https://doi.org/10.1007/s11427-024-2828-8

Aalborg, T., Romé, H., Ranzau, C., Bagge, M., Jensen, J. & Nielsen, K. L. (2025). The transmission ability in a population of elite tetraploid potatoes. The Plant Genome, 18(3), Article e70066. https://doi.org/10.1002/tpg2.70066, https://doi.org/10.1002/tpg2.70066

Bouquet, A. E. R., Kargo, M., Thorup, V. M., Chen, L., Østergaard, S. & Stephansen, R. B. (2025). Modelling feed efficiency in dairy cows for selection and management decisions. In Book of Abstracts - 76th Annual Meeting of the European Federation of Animal Science (EAAP) (pp. 362). Article Theatre 5.

Teng, J., Duan, C., Zhang, X., Chen, Z., Ning, C., Li, R., Gao, Y., Gao, H., Liu, H., Li, J., Wang, X. & Zhang, Q. (2025). Bayesian fine-mapping and Mendelian randomization leveraging expression quantitative trait loci reveal novel candidate causal genes for body conformation traits in cattle. Journal of Dairy Science, 108(8), 8637-8647. https://doi.org/10.3168/jds.2025-26361

Sendrowski, J., Bataillon, T. & Ramstein, G. P. (2025). In silico prediction of variant effects: promises and limitations for precision plant breeding. Theoretical and Applied Genetics, 138(8), Article 193. https://doi.org/10.1007/s00122-025-04973-1

Li, P., Li, Z., Ying, F., Zhu, D., Liu, D., Song, X., Wen, J., Zhao, G. & An, B. (2025). Leveraging ultrasonic-derived phenotypes and estimated breeding value to improve abdominal fat weight prediction in chickens throughout the egg laying period. Smart Agricultural Technology, 11, Article 100912. https://doi.org/10.1016/j.atech.2025.100912

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Prediction of black soldier fly larval sex and morphological traits using computer vision and deep learning. Smart Agricultural Technology, 11, Article 100953. https://doi.org/10.1016/j.atech.2025.100953

Brulin, L., Sanchez, M.-P., Cai, Z., Ducrocq, S., Even, G., Martel, S., Merlin, S., Audebert, C., Estellé, J., Sahana, G. & Croiseau, P. (2025). Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows. Journal of Dairy Science, 108(8), 8666-8684. https://doi.org/10.3168/jds.2024-26203

Ye, X., Sahana, G., Lund, M. S. & Cai, Z. (2025). The crosstalk between host and rumen microbiome in cattle: insights from multi-omics approaches and genome-wide association studies. World Journal of Microbiology and Biotechnology, 41(8), Article 267. https://doi.org/10.1007/s11274-025-04504-6

Sandrock, C., Generalovic, T. N., Paul, K., Petersen, G. E. L., Sellem, E., Smith, M. B., Tapio, M., Yakti, W., Beukeboom, L. W., Deruytter, D., Jiggins, C. D., Lefebvre, T., Librado, P., Pannebakker, B. A., Picard, C. J., Rhode, C., Sørensen, J. G., Bouwman, A. C., Hansen, L. S. & Obšteter, J. (2025). BugBook: Genetics of insects as food and feed. Journal of Insects as Food and Feed, 1-59. Advance online publication. https://doi.org/10.1163/23524588-bja10260

Shrestha, M., Bai, Z., Gholipourshahraki, T., Hjelholt, A. J., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2025). Enhanced genetic fine mapping accuracy with Bayesian Linear Regression models in diverse genetic architectures. PLoS Genetics, 21(7), e1011783. Article e1011783. https://doi.org/10.1371/journal.pgen.1011783

CattleGTEx Consortium (2025). Genetic score omics regression and multitrait meta-analysis detect widespread cis-regulatory effects shaping bovine complex traits. PNAS Nexus, 4(7), Article pgaf208. https://doi.org/10.1093/pnasnexus/pgaf208

Zhao, Q., Liu, H., Zhang, Q., Qadri, Q. R., Pan, Y., Su, G., Li, P. & Huang, R. (2025). Optimal Combination of Different Selection and Mating Strategies on Exploiting Genetic Diversity and Genetic Gain in Small Pig Conservation Populations. Journal of Animal Breeding and Genetics, 142(4), 444-453. https://doi.org/10.1111/jbg.12917

de Hollander, C. A., Chu, T. T., Marois, D., Felipe, V. B., Lopes, F. B. & Calus, M. P. L. (2025). The Effect of Preselection on the Level of Bias and Accuracy in a Broiler Breeder Population, a Simulation Study. Journal of Animal Breeding and Genetics, 142(4), 392-407. https://doi.org/10.1111/jbg.12908

Stephansen, R. B., van Breukelen, A. E., Almasi, F., González-Recio, O., Teran, E., Milkevych, V., Miglior, F., Baes, C. F., Bakke, K. A., Benzoni, L., Finocchiaro, R., Frizzarin, M., Krattenmacher, N., Lassen, J., Pryce, J. E., Richardson, C. & Gredler-Grandl, B. (2025). Are methane sniffer phenotypes useful for genetic ranking of dairy cattle? In Book of Abstracts - ADSA 2025 Annual Meeting (pp. 143-144). Article 1513 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Schneider, H. H., Lajevardi, R. K., Bjerring, M., Løvendahl, P., Lund, M. S., Villumsen, T. M. & Stephansen, R. B. (2025). Genetic parameters for enteric methane traits and their relationship with milk production in Danish Holstein and Danish Jersey Cattle. In Abstracts of the 2025 American Dairy Science Association® Annual Meeting (pp. 165-166). Article 1564 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Lassen, J., Stephansen, R. B., Kupisiewicz, K. & Bengtson, C. (2025). Large-scale measured body weight changes effect on yield, health, reproduction, and feed efficiency in 3 different dairy cattle breeds. In Abstracts of the 2025 American Dairy Science Association® Annual Meeting (pp. 160-160). Article 1550 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Hendriksen, N. B., Madsen, C. K. & Sahana, G., (2025). DCA response to EFSA public consultation PC-1460 regarding scientific and technical assistance for a regular horizon scanning to assess new scientific data on plants, animals, microorganisms and products thereof obtained by new genomic techniques., No. 2025-0833795, 38 p., Jun 13, 2025. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Kristensen, P. S., Chu, T. T., Sarup, P., Orabi, J., Mohlfeld, M., Jahoor, A. & Jensen, J. (2025). Optimizing hybrid rye breeding programs using simulations. 26. Abstract from International Symposium on Rye Breeding and Genetics, Tartu, Estonia. https://www.ryest2025.ee/userfiles/ryest2025/RYEST_abstract_book_2025_2.pdf

Adeniyi, O. O., Grochowska, E., Cai, Z. & Lühken, G. (2025). Comparative transcriptome analysis reveals genes associated with variation in liver copper concentration in Polish Merino sheep. Scientific Reports, 15(1), Article 19576. https://doi.org/10.1038/s41598-025-04330-8

Zhu, D., Wang, Y., Qu, H., Feng, C., Zhang, H., Sheng, Z., Jiang, Y., Nie, Q., Chu, S., Shu, D., Jiang, Z., Zhang, D., Fang, L., Li, H., Xu, Z., Zhao, Y., Wang, Y. & Hu, X. (2025). GCRP: Integrated Global Chicken Reference Panel from 11,951 Chicken Genomes. Genomics, Proteomics and Bioinformatics, 23(3), Article qzaf032. https://doi.org/10.1093/gpbjnl/qzaf032

Laursen, S. F., Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Sahana, G., Sørensen, J. G., Ørsted, M. & Kristensen, T. N. (2025). Genotype-by-environment interactions for mean performance and trait variation in house fly larvae reared on two diets. Entomologia Experimentalis et Applicata, 173(6), 575-589. https://doi.org/10.1111/eea.13530

Tenhunen, S., Thomasen, J. R., Sørensen, L. P., Kargo, M., Berg, P. & Nielsen, H. M. (2025). Inbreeding affects the survival of Danish Jersey and Holstein dairy cows. Journal of Dairy Science, 108(6), 6203-6215. https://doi.org/10.3168/jds.2024-26125

Laursen, S. F., Nielsen, H. M., Bahrndorff, S., Sahana, G., Sørensen, J. G., Kristensen, T. N. & Hansen, L. S. (2025). Multi-trait pedigree-based selective breeding to optimise farmed insects: Evidence from a house fly population. Journal of Insects as Food and Feed. Advance online publication. https://doi.org/10.1163/23524588-bja10247

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Short communication: Substantial heritability of larval size in the black soldier fly reveals potential for selective breeding. ANIMAL, 19(6), Article 101534. https://doi.org/10.1016/j.animal.2025.101534

McLain, A., Kowalczyk, A., Baran-Rachwalska, P., Sutera, F. M., Robertson, L. J., Nielsen, N. S., Enghild, J. J., Cobice, D., Bonelli, F., Barbaro, V., Ferrari, S., Patterson, B., Moore, L., Marshall, J., Nesbit, M. A. & Moore, T. (2025). TGFBI R124H mutant allele silencing in granular corneal dystrophy type 2 using topical siRNA delivery. Journal of Controlled Release, 382, Article 113681. https://doi.org/10.1016/j.jconrel.2025.113681

Hansen, L. S., Laursen, S. F., Bahrndorff, S., Sørensen, J. G., Sahana, G., Kristensen, T. N. & Nielsen, H. M. (2025). The unpaved road towards efficient selective breeding in insects for food and feed: A review. Entomologia Experimentalis et Applicata, 173(6), 498-521. https://doi.org/10.1111/eea.13526

Xu, Z., Lin, Q., Cai, X., Zhong, Z., Teng, J., Li, B., Zeng, H., Gao, Y., Cai, Z., Wang, X., Shi, L., Wang, X., Wang, Y., Zhang, Z., Lin, Y., Liu, S., Yin, H., Bai, Z., Wei, C. ... Zhang, Z. (2025). Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs. National Science Review, 12(5), Article nwaf048. https://doi.org/10.1093/nsr/nwaf048

Loft, A., Emont, M. P., Weinstock, A., Divoux, A., Ghosh, A., Wagner, A., Hertzel, A. V., Maniyadath, B., Deplancke, B., Liu, B., Scheele, C., Lumeng, C., Ding, C., Ma, C., Wolfrum, C., Strieder-Barboza, C., Li, C., Truong, D. D., Bernlohr, D. A. ... Rosen, E. D. (2025). Towards a consensus atlas of human and mouse adipose tissue at single-cell resolution. Nature Metabolism, 7(5), 875-894. https://doi.org/10.1038/s42255-025-01296-9

Markant, A., Tabrizi, F., Grönvall, H., Speed, D. & Åhs, F. (2025). Association Between Polygenic Risk Scores and Treatment Response to Antidepressants, Benzodiazepines, and Antihistamines in Anxiety and Depression. Biological Psychiatry: Global Open Science, 5(3), Article 100470. https://doi.org/10.1016/j.bpsgos.2025.100470

ChickenGTEx Consortium (2025). Genetic regulation of gene expression across multiple tissues in chickens. Nature Genetics, 57(5), 1298-1308. Article 1821. https://doi.org/10.1038/s41588-025-02155-9

Epi25 Collaborative (2025). Genome-wide association meta-analyses of drug-resistant epilepsy. EBioMedicine, 115, 105675. Article 105675. https://doi.org/10.1016/j.ebiom.2025.105675

Zhang, Q., Cui, B., Dong, X., Lv, W., Xie, X., Wang, Y., Guo, Z. & Jensen, J. (2025). Mapping of identity by descent reveals genes shaping morphology and biological traits in the cultivated lettuce varieties during the long-term crossbreeding. Theoretical and Applied Genetics, 138(5), Article 99. https://doi.org/10.1007/s00122-025-04879-y

Bengtsson, C., Stålhammar, H., Thomasen, J. R., Fikse, W. F., Strandberg, E., Eriksson, S. & Johnsson, M. (2025). Simulation of long-term impact of dairy cattle mating programmes using genomic information at the herd level. ANIMAL, 19(5), Article 101498. https://doi.org/10.1016/j.animal.2025.101498

Li, X., Wang, Z., Zhu, M., Wang, B., Teng, S., Yan, J., Wang, H., Yuan, P., Cao, S., Qu, X., Wang, Z., Zhan, K., Choudhury, M. P., Yang, X., Bao, Q., He, S., Liu, L., Zhao, P., Jiang, J. ... Yi, G. (2025). Genomic Insights into Post-Domestication Expansion and Selection of Body Size in Ponies. Advanced Science, 12(16), Article 2413023. https://doi.org/10.1002/advs.202413023

Henry, J., Berrandou, T., Brewster, L. M. & Bouatia-Naji, N. (2025). Blood Pressure, Cardiometabolic Traits, and Cardiovascular Events in Women With Uterine Fibroids: A Genetic Correlation and Mendelian Randomization Study. Journal of the American Heart Association, 14(8), Article e036697. https://doi.org/10.1161/JAHA.124.036697

Digel, L., Justesen, M. L., Madsen, N. S., Fransaert, N., Wouters, K., Bonné, R., Plum-Jensen, L. E., Marshall, I. P. G., Jensen, P. B., Nicolas-Asselineau, L., Drace, T., Bøggild, A., Hansen, J. L., Schramm, A., Bøjesen, E. D., Nielsen, L. P., Manca, J. V. & Boesen, T. (2025). Comparison of cable bacteria genera reveals details of their conduction machinery. EMBO Reports, 26(7), 1749-1767. Article 13699. https://doi.org/10.1038/s44319-025-00387-8

Hansen, L. S., Bouwman, A. C., Sahana, G., Slagboom, M., Nielsen, H. M. & Ellen, E. D. (2025). Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation. Animal, 19(4), Article 101475. https://doi.org/10.1016/j.animal.2025.101475

Skovbjerg, C. K., Sarup, P., Wahlström, E., Jensen, J. D., Orabi, J., Olesen, L., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Correction: Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program (Heredity, (2025), 134, 1, (33-48), 10.1038/s41437-024-00733-x). Heredity, 134(3), 248-249. https://doi.org/10.1038/s41437-025-00751-3

Zhou, J., Xu, L., Liu, Q., Ma, J., He, J., Casey, D. S., Zhong, L., Su, G., Huang, R., Li, P. & Zhao, Q. (2025). Genetic parameters of vulva traits and impact of vulva scores on gilts culling in Large White pigs. ANIMAL, 19(4), Article 101472. https://doi.org/10.1016/j.animal.2025.101472

Henry, A., Mo, X., Finan, C., Chaffin, M. D., Speed, D., Issa, H., Denaxas, S., Ware, J. S., Zheng, S. L., Malarstig, A., Gratton, J., Bond, I., Roselli, C., Miller, D., Chopade, S., Schmidt, A. F., Abner, E., Adams, L., Andersson, C. ... Genes & Health Research Team (2025). Genome-wide association study meta-analysis provides insights into the etiology of heart failure and its subtypes. Nature Genetics, 57(4), 815-828. Article 163. https://doi.org/10.1038/s41588-024-02064-3

Gao, Y., Yang, L., Kuhn, K., Li, W., Zanton, G., Bowman, M., Zhao, P., Zhou, Y., Fang, L., Cole, J. B., Rosen, B. D., Ma, L., Li, C., Baldwin, R. L., Van Tassell, C. P., Zhang, Z., Smith, T. P. L. & Liu, G. E. (2025). Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle. Journal of Advanced Research. Advance online publication. https://doi.org/10.1016/j.jare.2025.04.014

Yousaf, M. F., Tomar, V., Romé, H., Bagge, M., Timmermann, M., Chu, T. T. & Jensen, J. (2025). Rate of double reduction and genetic variability in yield, quality, and senescence related traits in tetraploid potato (Solanum tuberosum L.). Frontiers in Plant Science, 16, Article 1560123. https://doi.org/10.3389/fpls.2025.1560123

Johansen, K. K., Kargo, M., Christensen, O. F., Bjerring, M., Løvendahl, P. & Buitenhuis, A. J. (2025). Repeatability and genetic parameters for phenotypes of methane emission in crossbred beef×dairy slaughter calves. Animal : an international journal of animal bioscience, 19(4), 101478. Article 101478. https://doi.org/10.1016/j.animal.2025.101478

FarmGTEx Consortium (2025). The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project. Nature Genetics, 57(4), 786-796. Article 604. https://doi.org/10.1038/s41588-025-02121-5

Zan, Y., Chen, S., Ren, M., Liu, G., Liu, Y., Han, Y., Dong, Y., Zhang, Y., Si, H., Liu, Z., Liu, D., Zhang, X., Tong, Y., Li, Y., Jiang, C., Wen, L., Xiao, Z., Sun, Y., Geng, R. ... Yang, A. (2025). The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation. Nature Genetics, 57(4), 986-996. Article 3833. https://doi.org/10.1038/s41588-025-02126-0

Conover, C. A. & Oxvig, C. (2025). The IGF System and Aging. Endocrine Reviews, 46(2), 214-223. https://doi.org/10.1210/endrev/bnae029

Worm, J., Jørgensen, I. F., Davídsson, Ó. B., Hjalgrim, H., Röder, T., Ostrowski, S. R., Pedersen, O. B., Erikstrup, C., Bruun, M. T., Jensen, B. A., Sørensen, E., Ullum, H., Björnsdóttir, G., Thorgeirsson, T., Stefánsson, H., Sveinsson, Ó. Á., Stefansson, K., Schytz, H. W., Bendtsen, L. ... Westergaard, D. (2025). Trigeminal neuralgia and its comorbidities: A nationwide disease trajectory study. Pain, 166(4), 879-887. https://doi.org/10.1097/j.pain.0000000000003428

Ramírez-Díaz, J., Bobbo, T., Guldbrandtsen, B., Schönherz, A. A., Cozzi, P., Kusza, S., Sahana, G., Stella, A. & Manunza, A. (2025). Exploring the complex population structure and admixture of four local Hungarian sheep breeds. Frontiers in Genetics, 16, Article 1507315. https://doi.org/10.3389/fgene.2025.1507315

Holur, P., Enevoldsen, K. C., Rajesh, S., Mboning, L., Georgiou, T., Bouchard, L. S., Pellegrini, M. & Roychowdhury, V. (2025). Embed-Search-Align: DNA sequence alignment using Transformer models. Bioinformatics, 41(3), Article btaf041. https://doi.org/10.1093/bioinformatics/btaf041

Thorsteinsson, M. M., Schönherz, A. A., Noel, S. J., Cai, Z., Niu, Z., Hellwing, A. L. F., Lund, P., Weisbjerg, M. R. & Nielsen, M. O. (2025). A preliminary study on the effects of red Bonnemaisonia hamifera seaweed on methane emissions from dairy cows. JDS Communications , 6(2), 217-222. https://doi.org/10.3168/jdsc.2024-0670

Cantet, R. J. C. & Jensen, J. (2025). Causal inference and GWAS: Rubin, Pearl, and Mendelian randomization. Journal of Animal Breeding and Genetics, 142(2), 200-213. https://doi.org/10.1111/jbg.12898

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Jette Odgaard Villemoes