Marete, A. G., Sahana, G., Fritz, S., Lefebvre, R., Barbat, A.
, Lund, M. S., Guldbrandtsen, B. & Boichard, D. (2018).
Genome-wide association study for milking speed in French Holstein cows.
Journal of Dairy Science,
101(7), 6205-6219.
https://doi.org/10.3168/jds.2017-14067
Song, H.
, Li, L., Ma, P., Zhang, S., Su, G., Lund, M. S., Zhang, Q. & Ding, X. (2018).
Short communication: Improving the accuracy of genomic prediction of body conformation traits in Chinese Holsteins using markers derived from high-density marker panels.
Journal of Dairy Science,
101(6), 5250-5254.
https://doi.org/10.3168/jds.2017-13456Rohde, P. D., Østergaard, S., Kristensen, T. N.
, Sørensen, P., Loeschcke, V., F C Mackay, T.
& Sarup, P. M. (2018).
Functional validation of candidate genes detected by genomic feature models.
G3: Genes, Genomes, Genetics (Bethesda),
8(5), 1659-1668.
https://doi.org/10.1534/g3.118.200082
Welderufael, B. G., Løvendahl, P., De Koning, D.-J.
, Janss, L. & Fikse, F. (2018).
Genome-wide association study for susceptibility to and recoverability from mastitis in Danish Holstein cows.
Frontiers in Genetics,
9(APR), Article 141.
https://doi.org/10.3389/fgene.2018.00141
Cericola, F., Lenk, I., Fè, D.
, Byrne, S., Jensen, C. S., Pedersen, M. G.
, Asp, T., Jensen, J. & Janss, L. (2018).
Optimized Use of Low-Depth Genotyping-by-Sequencing for Genomic Prediction among multi-parental Family Pools and Single Plants in Perennial Ryegrass (Lolium perenne L.).
Frontiers in Plant Science,
9, Article 369.
https://doi.org/10.3389/fpls.2018.00369
Bouwman, A. C., Daetwyler, H. D., Chamberlain, A. J., Ponce, C. H., Sargolzaei, M., Schenkel, F. S.
, Sahana, G., Govignon-Gion, A.
, Boitard, S., Dolezal, M., Pausch, H.
, Brøndum, R. F., Bowman, P. J.
, Thomsen, B., Guldbrandtsen, B., Lund, M. S., Servin, B., Garrick, D. J., Reecy, J. ... Hayes, B. J. (2018).
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.
Nature Genetics,
50(3), 362-372.
https://doi.org/10.1038/s41588-018-0056-5Karaman, E., Lund, M. S., Anche, M. T., Janss, L. & Su, G. (2018).
A two-step approach to account for heterogeneous (co)variances across the genome using GBLUP. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Su, G., Madsen, P., Nielsen, B., Ostersen, T.
, Shirali, M., Jensen, J. & Christensen, O. F. (2018).
Efficiency of group records for prediction of breeding values. In
Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Methods and Tools - Prediction 3 (pp. 1-6). Article 11.565 WCGALP.
http://www.wcgalp.org/proceedings/2018/efficiency-group-records-prediction-breeding-values
Kristensen, P. S., Jahoor, A.
, Andersen, J. R., Cericola, F., Orabi, J.
, Janss, L. L. & Jensen, J. (2018).
Genome-wide association studies and comparison of models and cross-validation strategies for genomic prediction of quality traits in advanced winter wheat breeding lines.
Frontiers in Plant Science,
9, Article 69.
https://doi.org/10.3389/fpls.2018.00069
Mesbah-Uddin, M., Guldbrandtsen, B., Iso-Touru, T., Vilkki, J., De Koning, D.-J., Boichard, D.
, Lund, M. S. & Sahana, G. (2018).
Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle.
D N A Research,
25(1), 49-59.
https://doi.org/10.1093/dnares/dsx037
Madsen, P., Milkevych, V., Gao, H., Christensen, O. F. & Jensen, J. (2018).
DMU - A Package for Analyzing Multivariate Mixed Models in Quantitative Genetics and Genomics. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018).
Genetic variance in macro-environmental sensitivity in growth rate in Danish Duroc pigs. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2018).
Genome-wide association study of the de novo synthesized milk fatty acids based on Dutch, Danish and Chinese Holstein Friesians. 141. Abstract from The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Shetty, N., Janss, L., Zaalberg, R. M., Kargo, M. & Buitenhuis, A. J. (2018).
Lactation stage dependent genome-wide association mapping for longitudinal data of milk fatty acids in dairy cattle using Bayesian mixture models. 321. Abstract from The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Ørsted, M.
, Rohde, P. D., Hoffmann, A. A.
, Sørensen, P. & Kristensen, T. N. (2018).
Environmental variation partitioned into separate heritable components.
Evolution,
72(1), 136-152.
https://doi.org/10.1111/evo.13391Hosseini-Vardanjani, S. M.
, Mahdi Shariati, M., Janss, L., Christensen, O. F., Anche, M. T. & Lund, M. S. (2018).
Accounting for breed origin of alleles increase accuracy of genomic prediction in admixed populations. Poster session presented at World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand.
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018).
Adjusting for Macro-Environmental Sensitivity in Growth rate of Danish Landrace and Duroc Pigs. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Marete, A. G., Guldbrandtsen, B., Lund, M. S., Fritz, S.
, Sahana, G. & Boichard, D. (2018).
A Meta-Analysis Including Pre-selected Sequence Variants Associated With Seven Traits in Three French Dairy Cattle Populations.
Frontiers in Genetics,
9, Article 522.
https://doi.org/10.3389/fgene.2018.00522
Slagboom, M., Wallenbeck, A., Rydhmer, L.
, Thomasen, J. R. & Kargo, M. (2018).
Breeding Goals for Organic Dairy Farming in Denmark Based on the Principles of Organic Agriculture. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gajjar, S. G.
, Guldbrandtsen, B., Su, G., Nayee, N. K.
, Sahana, G., Trivedi, K. R.
& Lund, M. S. (2018).
Breed-of-origin specific genomic relationship matrix improves genomic prediction accuracy in crossbred Holstein Friesian cattle in India. In
Proceedings of the World Congress on Genetics Applied to Livestock Production 2018: Volume theory to application (Vol. 3). Article 11.754
http://www.wcgalp.org/proceedings/2018/breed-origin-specific-genomic-relationship-matrix-improves-genomic-predictionDifford, G., Gebreyesus, G., Løvendahl, P., Buitenhuis, A. J., Lassen, J., Guldbrandtsen, B. & Sahana, G. (2018).
Can rumen microbes improve prediction of subclinical ketosis in dairy cows? In S. C. (Ed.),
Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science (Vol. 24). Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-871-1
Slagboom, M., Mulder, H. A.
, Sørensen, A. C., Hjortø, L., Thomasen, J. R. & Kargo, M. (2018).
Effects of specific breeding lines for organic dairy production in Denmark. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Boichard, D. A., Boussaha, M., Capitan, A., Rocha, D., Hoze, C., Sanchez, M.-P., Tribout, T., Letaief, R., Croiseau, P., Grohs, C., Li, W., Harland, C., Charlier, C.
, Lund, M. S., Sahana, G., Georges, M., Barbier, S., Coppieters, W., Fritz, S.
& Guldbrandtsen, B. (2018).
Experience from large scale use of the EuroGenomics custom SNP chip in cattle. In
Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Molecular Genetics 4 (Vol. 11). Article 11.675
http://www.wcgalp.org/proceedings/2018/experience-large-scale-use-eurogenomics-custom-snp-chip-cattleMarete, A. G., Janss, L., Guldbrandtsen, B., Hoze, C.
, Sahana, G., Boichard, D. A.
& Lund, M. S. (2018).
Exploring non-additive variance using genome-wide dense SNP in four French and Nordic dairy cattle breeds. In
Proceedings of the World Congress on Genetics Applied to Livestock Production Article 70
Yan, X.
, Liu, A., Dong, G., Guo, G., Li, X.
, Su, G. & Wang, Y. (2018).
Genetic analysis of productive life in Chinese Holstein population. Abstract from 5th International Conference on Quantitative Genetics, Madison, United States.
Zhang, H., Xu, W., Li, X., Luo, H.
, Liu, A. & Wang, Y. (2018).
Genetic analysis of skinfold thickness and its association with body condition score, and milk production traits in Chinese Holstein population. Abstract from ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gajjar, S. G.
, Guldbrandtsen, B., Nayee, N. G., Sudhakar, A., Trivedi, K. R.
, Lund, M. S. & Sahana, G. (2018).
Genetic composition, divergence, admixture and use of ancestry informative markers in indigenous breeds of cattle in India. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Challenges - Species Conservation Article 585
http://www.wcgalp.org/archive?f%5Bauthor%5D=14045Poulsen, N. A., Le, T. T. T., Gregersen, V. R., Christensen, B. S., Sørensen, E. S., Larsen, L. B. & Buitenhuis, A. J. (2018).
Genetic parameter estimation of high value milk proteins and whey to casein ratio in Danish Holstein. In
Proceedings of the 11th World Congress on Genetics Applied to Livestock Production (WCGALP), Auckland, New Zealand Article 312
Luo, H., Xu, W.
, Liu, A., Li, X., Liu, L. & Wang, Y. (2018).
Genome-wide association study for rectal temperature in Chinese Holstein population. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 Article 587
http://www.wcgalp.org/system/files/proceedings/2018/genome-wide-association-study-rectal-temperature-chinese-holstein-population.pdfNayee, N. K.
, Su, G., Gajjar, S. G.
, Sahana, G., Saha, S., Trivedi, K. R.
, Guldbrandtsen, B. & Lund, M. S. (2018).
Genomic prediction by single-step genomic BLUP using cow reference population in Holstein crossbred cattle in India. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Nayee, N. K.
, Su, G., Gajjar, S.
, Sahana, G., Saha, S., Trivedi, K. R.
, Guldbrandtsen, B. & Lund, M. S. (2018).
Genomic prediction by single-step genomic BLUP using cow reference population in Holstein crossbred cattle in India. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Theory to Application - 1 (Vol. 11). Article 11.411
http://www.wcgalp.org/proceedings/2018/genomic-prediction-single-step-genomic-blup-using-cow-reference-population-holsteinSu, G., Mansan Gordo, D. G., Li, B., Aamand, G.
, Lund, M. S. & Lassen, J. (2018).
Genomic prediction for dry matter intake in Nordic Holsteins. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 (Vol. Volume Electronic Poster Session - Methods and Tools - Prediction 2). Article 474 WCGALP.
http://www.wcgalp.org/system/files/proceedings/2018/genomic-prediction-dry-matter-intake-nordic-holsteins.pdf
Anche, M. T., Su, G., Karaman, E., Janss, L. & Lund, M. S. (2018).
Genomic prediction using multi-trait model with heterogeneous genomic (co)variance. In
Proceedings of the World Congress on Genetics Applied to Livestock, 2018 (Vol. Volume Methods and Tools - Models and Computing Strategies 2, pp. 1-6). Article 284
http://www.wcgalp.org/system/files/proceedings/2018/genomic-prediction-using-multi-trait-model-heterogeneous-genomic-covariance.pdf
Villumsen, T. M., Su, G., Cai, Z., Guldbrandtsen, B., Asp, T., Sahana, G. & Lund, M. S. (2018).
Genomic selection in mink yield higher accuracies with a Bayesian approach allowing for heterogeneous variance than a GBLUP model. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Methods and Tools - Prediction 2 Article 11.618
http://www.wcgalp.org/proceedings/2018/genomic-selection-mink-yield-higher-accuracies-bayesian-approach-allowing
Guldbrandtsen, B., Cai, Z., Sahana, G., Villumsen, T. M., Asp, T., Thomsen, B. & Lund, M. S. (2018).
Genomics using the Assembly of the Mink Genome. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Molecular Genetics 1 Article 539
http://www.wcgalp.org/proceedings/2018/genomics-using-assembly-mink-genome
Liu, A., Kargo, M., Höglund, J., Zhang, Z., Thomasen, J. R., Christiansen, I. A., Wang, Y.
& Su, G. (2018).
Genotype by environment interaction for female fertility traits under conventional and organic production systems in Danish Holsteins. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Nielsen, B. J., Gao, H., Ostersen, T.
, Su, G., Jensen, J., Madsen, P. & Shirali, M. (2018).
Group recordings accounted for drop out animals. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Sarup, P. M., Jensen, J., Ostersen, T.
, Christensen, O. F. & Sørensen, P. (2018).
H1 NMR metabolomic phenotypic prediction of growth in pigs. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Pitkänen, T. J., Mäntysaari, E. A., Nielsen, U. S., Aamand, G. P.
, Madsen, P., Eriksson, J. & Lidauer, M. H. (2018).
Incorporation of observations with different residual error variances into existing complex test-day models.
Acta Agriculturae Scandinavica, Section A - Animal Science,
68(1), 11-24.
https://doi.org/10.1080/09064702.2018.1541361Thomasen, J. R., Lassen, J., Gunner Brink Nielsen, G., Borggard, C., Bolvig Stentebjerg, P. R., Hjort Hansen, R., Worsøe Hansen, N. & Borchersen, S. (2018).
Individual cow identification in a commercial herd using 3D camera technology. Abstract from ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
http://www.wcgalp.org/proceedings/2018/individual-cow-identification-commercial-herd-using-3d-camera-technology
Chu, T. T., Madsen, P., Wang, L., Henshall, J., Hawken, R.
& Jensen, J. (2018).
Influence of age on variance components for bodyweight in commercial male and female broiler chicken. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Schönherz, A. A., Forsberg, R.
, Guldbrandtsen, B., Buitenhuis, A. J. & Einer-Jensen, K. (2018).
Introduction of Viral Hemorrhagic Septicemia Virus into Freshwater Cultured Rainbow Trout Is Followed by Bursts of Adaptive Evolution.
Journal of Virology,
92(12), Article e00436-18.
https://doi.org/10.1128/JVI.00436-18,
https://doi.org/10.1128/JVI.00436-18
Demirovic, D., Buitenhuis, A. J., Poulsen, N. A., Munk, A.
& Kargo, M. (2018).
Large scale screening of the Danish dairy cattle population for their milk fatty acid profile. Poster session presented at IDF World Dairy Summit 2018, Daejeon, Korea, Republic of.
Shirali, M., Nielsen, B. J., Ostersen, T.
, Christensen, O. F., Madsen, P., Su, G. & Jensen, J. (2018).
Modelling of grouped recorded data for different population structures in pig breeding. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Skjerve, T. A., Grova, L., Sorheim, L. K.
, Slagboom, M., Eriksson, S.
, Kargo, M. & Wallenbeck, A. (2018).
Norwegian dairy farmers' preferences for breeding goal traits and associations with herd and farm characteristics.
Acta Agriculturae Scandinavica, Section A - Animal Science,
68(3), 117-123.
https://doi.org/10.1080/09064702.2019.1627406Kargo, M., Thomasen, J. R., Wallenbeck, A.
, Hjortø, L. & Slagboom, M. (2018).
Organic dairy breeding lines? – Possibilities and Requirements. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Difford, G. F., Olijhoek, D. W., Hellwing, A. L. F., Lund, P., Bjerring, M. A., de Haas, Y.
, Lassen, J. & Løvendahl, P. (2018).
Ranking cows’ methane emissions under commercial conditions with sniffers versus respiration chambers.
Acta Agriculturae Scandinavica, Section A - Animal Science,
68(1), 25-32.
https://doi.org/10.1080/09064702.2019.1572784
Nielsen, H.-M., Ask, B.
, Christensen, O. F., Janss, L., Heidaritabar, M. & Madsen, P. (2018).
Social genetic effects for growth in Landrace pigs with varying group sizes. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 11.212 http://www.wcgalp.org/system/files/proceedings/2018/social-genetic-effects-growth-landrace-pigs-varying-group-sizes.pdf
Liu, A., Lund, M. S., Boichard, D., Fritz, S.
, Karaman, E., Wang, Y.
& Su, G. (2018).
Using additional single nucleotide polymorphisms selected from whole genome sequence data for genomic prediction in Danish Jersey. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 Article 586
http://www.wcgalp.org/system/files/proceedings/2018/using-additional-single-nucleotide-polymorphisms-selected-whole-genome-sequence-data-genomic.pdf
Gebreyesus, G., Lund, M. S., Buitenhuis, A. J., Bovenhuis, H.
, Poulsen, N. A. & Janss, L. (2017).
Modeling heterogeneous (co)variances from adjacent-SNP groups improves genomic prediction for milk protein composition traits.
Genetics Selection Evolution,
49(1), Article 89.
https://doi.org/10.1186/s12711-017-0364-8
Cai, Z., Petersen, B.
, Sahana, G., Madsen, L. B., Larsen, K., Thomsen, B., Bendixen, C., Lund, M. S., Guldbrandtsen, B. & Panitz, F. (2017).
The first draft reference genome of the American mink (Neovison vison).
Scientific Reports,
7(1), Article 14564.
https://doi.org/10.1038/s41598-017-15169-z
Villumsen, T. M., Su, G., Cai, Z., Guldbrandtsen, B., Asp, T., Sahana, G. & Lund, M. S. (2017).
Bayes AS and GBLUP models for genomic selection in mink. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.
Gebreyesus, G., Lund, M. S., Janss, L., Bovenhuis, H.
, Poulsen, N. A. & Buitenhuis, A. J. (2017).
Genomic prediction for detailed milk protein composition traits. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.
Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2017).
Multi-population GWAS for the de novo synthesis of milk fatty acids. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.
Zhu, Z., Noel, S. J., Difford, G. F., Al-Soud, W. A., Brejnrod, A., Sørensen, S. J.
, Lassen, J., Løvendahl, P. & Højberg, O. (2017).
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period.
P L o S One,
12(11), e0187858. Article e0187858.
https://doi.org/10.1371/journal.pone.0187858
Li, B., Berglund, B., Fikse, W. F.
, Lassen, J., Lidauer, M. H., Mäntysaari, P.
& Løvendahl, P. (2017).
Neglect of lactation stage leads to naive assessment of residual feed intake in dairy cattle.
Journal of Dairy Science,
100(11), 9076-9084.
https://doi.org/10.3168/jds.2017-12775
Geissmann, Q., Garcia Rodriguez, L., Beckwith, E. J., French, A. S., Jamasb, A. R. & Gilestro, G. F. (2017).
Ethoscopes: An open platform for high-throughput ethomics.
PLoS Biology,
15(10), Article e2003026.
https://doi.org/10.1371/journal.pbio.2003026
Chen, M., Su, G., Fu, J.
, Zhang, Q., Wang, A.
, Sandø Lund, M. & Guldbrandtsen, B. (2017).
Population admixture in Chinese and European Sus scrofa.
Scientific Reports,
7(1), Article 13178.
https://doi.org/10.1038/s41598-017-13127-3
Reyer, H.
, Shirali, M., Ponsuksili, S., Murani, E., Varley, P. F.
, Jensen, J. & Wimmers, K. (2017).
Exploring the genetics of feed efficiency and feeding behaviour traits in a pig line highly selected for performance characteristics.
Molecular Genetics and Genomics,
292(5), 1001-1011.
https://doi.org/10.1007/s00438-017-1325-1Ismael, A., Løvendahl, P., Fogh, A.
, Lund, M. S. & Su, G. (2017).
Improving genetic evaluation using a multitrait single-step genomic model for ability to resume cycling after calving, measured by activity tags in Holstein cows.
Journal of Dairy Science,
100(10), 8188-8196.
https://doi.org/10.3168/jds.2017-13122
Mebratie, W., Shirali, M., Madsen, P., Sapp, R. L., Hawken, R.
& Jensen, J. (2017).
The effect of selection and sex on genetic parameters of body weight at different ages in a commercial broiler chicken population.
Livestock Science,
204, 78-87.
https://doi.org/10.1016/j.livsci.2017.08.013
Villumsen, T. M., Cai, Z., Sahana, G., Guldbrandtsen, B., Asp, T. & Lund, M. S. (2017).
Gener i kortlagte genområder påvirker størrelse, kvalitet og reproduktion. In S. H. Møller & J. Malmkvist (Eds.),
Temadag om aktuel minkforskning (Vol. 103, pp. 32-40). DCA - Nationalt Center for Fødevarer og Jordbrug,.
http://pure.au.dk/portal/files/116891581/DCArapport103.pdf
Shetty, N., Difford, G., Lassen, J., Løvendahl, P. & Buitenhuis, A. J. (2017).
Predicting methane emissions of lactating Danish Holstein cows using Fourier transform mid-infrared spectroscopy of milk.
Journal of Dairy Science,
100(11), 9052-9060.
https://doi.org/10.3168/jds.2017-13014
