Li, Y., Pu, L., Shi, L.
, Gao, H., Zhang, P., Wang, L. & Zhao, F. (2021).
Revealing New Candidate Genes for Teat Number Relevant Traits in Duroc Pigs Using Genome-Wide Association Studies.
Animals,
11(3), Article 806.
https://doi.org/10.3390/ani11030806
Laursen, S. F.
, Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Noer, N. K., Renault, D.
, Sahana, G., Sørensen, J. G. & Kristensen, T. N. (2021).
Contrasting Manual and Automated Assessment of Thermal Stress Responses and Larval Body Size in Black Soldier Flies and Houseflies.
Insects,
12(5), Article 380.
https://doi.org/10.3390/insects12050380
Kramer, L. M., Wolc, A.
, Esfandyari, H., Thekkoot, D. M., Zhang, C., Kemp, R. A., Plastow, G. & Dekkers, J. C. M. (2021).
Purebred-crossbred genetic parameters for reproductive traits in swine.
Journal of Animal Science,
99(10), Article skab270.
https://doi.org/10.1093/jas/skab270
Kargo, M., Clasen, J. B., Nielsen, H. M., Byskov, K.
& Norberg, E. (2021).
Heterosis and breed effects for milk production and udder health traits in crosses between Danish Holstein, Danish Red, and Danish Jersey.
Journal of Dairy Science,
104(1), 678-682.
https://doi.org/10.3168/jds.2019-17866
Johannsen, I., Kilsgaard, B., Milkevych, V. & Moore, D. (2021).
Design, modelling, and experimental validation of a scalable continuous-flow hydrothermal liquefaction pilot plant.
Processes,
9(2), 1-18. Article 234.
https://doi.org/10.3390/pr9020234
Houlahan, K., Schenkel, F. S., Hailemariam, D.
, Lassen, J., Kargo, M., Cole, J. B., Connor, E. E., Wegmann, S., Oliveira, G. A., Miglior, F., Fleming, A., Chud, T. C. S. & Baes, C. F. (2021).
Effects of incorporating dry matter intake and residual feed intake into a selection index for dairy cattle using deterministic modeling.
Animals,
11(4), Article 1157.
https://doi.org/10.3390/ani11041157
Hjortø, L., Henryon, M.
, Liu, H., Berg, P., Thomasen, J. R. & Sørensen, A. C. (2021).
Pre-selection against a lethal recessive allele in breeding schemes with optimum-contribution selection or truncation selection.
Genetics Selection Evolution,
53, Article 75.
https://doi.org/10.1186/s12711-021-00669-4
Gebreyesus, G., Poulsen, N. A., Larsen, M. K., Larsen, L. B., Sørensen, E. S., Würtz Heegaard, C. & Buitenhuis, A. J. (2021).
Vitamin B12 and transcobalamin in bovine milk: Genetic variation and genome-wide association with loci along the genome.
JDS Communications ,
2(3), 127-131.
https://doi.org/10.3168/jdsc.2020-0048
Gautason, E., Sahana, G., Su, G., Benjamínsson, B. H., Jóhannesson, G.
& Guldbrandtsen, B. (2021).
Short Communication: Investigation of the feasibility of genomic selection in Icelandic Cattle.
Journal of Animal Science,
99(7), Article skab139.
https://doi.org/10.1093/jas/skab139
Gao, H., Su, G., Jensen, J., Madsen, P., Christensen, O. F., Ask, B.
, Poulsen, B. G., Ostersen, T.
& Nielsen, B. (2021).
Genetic parameters and genomic prediction for feed intake recorded at the group and individual level in different production systems for growing pigs.
Genetics Selection Evolution,
53(1), Article 33.
https://doi.org/10.1186/s12711-021-00624-3
Fu, Y., Thomas, A., Gasior, D., Harper, J., Gay, A., Jones, C., Hegarty, M.
, Asp, T., Fradera-Sola, A., Armstead, I. & Fernandez-Fuentes, N. (2021).
A comparison of shared patterns of differential gene expression and gene ontologies in response to water-stress in roots and leaves of four diverse genotypes of Lolium and Festuca spp. temperate pasture grasses.
PLOS ONE,
16(4), Article e0249636.
https://doi.org/10.1371/journal.pone.0249636
Eydivandi, S., Roudbar, M. A., Ardestani, S. S., Momen, M.
& Sahana, G. (2021).
A selection signatures study among Middle Eastern and European sheep breeds.
Journal of Animal Breeding and Genetics,
138(5), 574-588.
https://doi.org/10.1111/jbg.12536,
https://doi.org/10.1111/jbg.12536
De, T., Goncalves, A.
, Speed, D., Froguel, P., NFBC consortium, Gaffney, D. J., Johnson, M. R., Jarvelin, M.-R. & Coin, L. J. (2021).
Signatures of TSPAN8 variants associated with human metabolic regulation and diseases.
iScience,
24(8), Article 102893.
https://doi.org/10.1016/j.isci.2021.102893
Cuyabano, B. C. D.
, Rovere, G., Lim, D., Kim, T. H., Lee, H. K., Lee, S. H. & Gondro, C. (2021).
GPS coordinates for modelling correlated herd effects in genomic prediction models applied to Hanwoo beef cattle.
Animals,
11(7), Article 2050.
https://doi.org/10.3390/ani11072050
Clasen, J. B., Kargo, M., Fikse, W. F., Strandberg, E., Wallenbeck, A.
, Østergaard, S. & Rydhmer, L. (2021).
Conservation of a native dairy cattle breed through terminal crossbreeding with commercial dairy breeds.
Acta Agriculturae Scandinavica, Section A - Animal Science,
70(1).
https://doi.org/10.1080/09064702.2020.1867632
Clasen, J. B.
, Kargo, M., Østergaard, S., Fikse, W. F., Rydhmer, L. & Strandberg, E. (2021).
Genetic consequences of terminal crossbreeding, genomic test, sexed semen, and beef semen in dairy herds.
Journal of Dairy Science,
104(7), 8062-8075.
https://doi.org/10.3168/jds.2020-20028
Chu, T. T., Henryon, M.
, Jensen, J., Ask, B.
& Christensen, O. F. (2021).
Statistical model and testing designs to increase response to selection with constrained inbreeding in genomic breeding programs for pigs affected by social genetic effects.
Genetics Selection Evolution,
53(1), Article 1.
https://doi.org/10.1186/s12711-020-00598-8
Christensen, B., Zachariae, E. D., Poulsen, N. A., Buitenhuis, A. J., Larsen, L. B. & Sørensen, E. S. (2021).
Factors influencing milk osteopontin concentration based on measurements from Danish Holstein cows.
Journal of Dairy Research,
88(1), 89 - 94.
https://doi.org/10.1017/S0022029921000054
Cao, L., Mulder, H. A.
, Liu, H., Nielsen, H. M. & S⊘rensen, A. C. (2021).
Competitive gene flow does not necessarily maximize the genetic gain of genomic breeding programs in the presence of genotype-by-environment interaction.
Journal of Dairy Science,
104(7), 8122-8134.
https://doi.org/10.3168/jds.2020-19823
Bauer, M., Glenn, T., Achtyes, E. D., Alda, M., Agaoglu, E., Altınbaş, K., Andreassen, O. A., Angelopoulos, E., Ardau, R., Vares, E. A., Aydin, M., Ayhan, Y., Baethge, C., Bauer, R., Baune, B. T., Balaban, C., Becerra-Palars, C., Behere, A. P., Behere, P. B. ... Whybrow, P. C. (2021).
Variations in seasonal solar insolation are associated with a history of suicide attempts in bipolar I disorder.
International Journal of Bipolar Disorders,
9(1), Article 26.
https://doi.org/10.1186/s40345-021-00231-7
Atrian-Afiani, F., Gao, H., Joezy-Shekalgorabi, S.
, Madsen, P., Aminafshar, M., Ali, S.
& Jensen, J. (2021).
Genotype by climate zone interactions for fertility, somatic cell score, and production in Iranian Holsteins.
Journal of Dairy Science,
104(12), 12994-13007.
https://doi.org/10.3168/jds.2020-20084,
https://doi.org/10.3168/jds.2020-20084
Ask, B., Pedersen, L. V.
, Christensen, O. F., Nielsen, H. M., Turner, S. P.
& Nielsen, B. (2021).
Selection for social genetic effects in purebreds increases growth in crossbreds.
Genetics, selection, evolution : GSE,
53(1), Article 15.
https://doi.org/10.1186/s12711-021-00609-2
Ahmad, S., Drag, M. H., Salleh, S. M.
, Cai, Z. & Nielsen, M. O. (2021).
Transcriptomics analysis of differentially expressed genes in subcutaneous and perirenal adipose tissue of sheep as affected by their pre- and early postnatal malnutrition histories.
BMC Genomics,
22(1), Article 338.
https://doi.org/10.1186/s12864-021-07672-5
Afiani, F. A., Joezy-Shekalgorabi, S., Amin-Afshar, M., Sadeghi, A.-A.
& Jensen, J. (2021).
Additive genetic and permanent environmental correlation between different parts of lactation in moderate and cold regions.
Czech Journal of Animal Science,
66(4), 112-121.
https://doi.org/10.17221/254/2020-CJAS
Hutchings, N., Lærke, P. E., Munkholm, L. J., Elsgaard, L., Kristensen, T., Rasmussen, J., Lund, P., Børsting, C. F., Løvendahl, P., Mikkelsen, M. H., Albrektsen, R., Gyldenkærne, S., Møller, H. B., Hansen, M. J., Feilberg, A. & Adamsen, A. P. S., (2020).
Opdatering af effekter og potentialer af klimavirkemidler til anvendelse i landbrug, No. 2019-0035910, 23 p., Mar 02, 2020.
Zaalberg, R. M., Bovenhuis, H.
, Poulsen, N. A., Larsen, L. B., Sehested, J. & Buitenhuis, A. J. (2020).
Genetic analysis on minerals predicted with Fourier transform infrared milk spectra for two Danish dairy cattle breeds. Abstract from 71st Annual Meeting of European Federation of Animal Science.
https://www.wageningenacademic.com/doi/book/10.3920/978-90-8686-900-8
Sarup, P.
, Guo, X., Nielsen, N., Jensen, J. D., Mulder, F., Jihad, O., Edriss, V., Jahoor, A.
& Jensen, J. (2020).
Using NMR metabolomics in breeding for malt quality in spring barley. Abstract from International Symposium of the Society for Plant Breeding (GPZ), Tulln, Austria.
https://gpz2020.boku.ac.at/wp-content/uploads/2020/03/06_Sarup.pdf
Mesbah-Uddin, M., Guldbrandtsen, B., Capitan, A.
, Lund, M. S., Boichard, D.
& Sahana, G. (2020).
Strategy to imputation of large genomic deletions and utilizing them in mapping and genomic prediction in cattle. Abstract from 6th International Conference of Quantitative Genetics, Brisbane, Australia.
https://icqg6.org/wp-content/uploads/2020/11/ICQG6_2020_Abstract_Book.pdf
Vestergaard, M., Spleth, P., Stephansen, R.
, Kargo, M., Ettema, J. F. & Fogh, A. (2020).
Utilizing beef x dairy crossbreds for beef production – Danish experiences. In
Book of Abstracts of the 71st Annual Meeting of the European Federation of Animal Science (Vol. 26, pp. 317). Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-900-8
Christensen, O. F., Nielsen, B., Su, G., Xiang, T., Madsen, P., Ostersen, T., Velander, I. & Strathe, A. B. (2020).
Correction to: A bivariate genomic model with additive, dominance and inbreeding depression effects for sire line and three-way crossbred pigs.
Genetics, selection, evolution : GSE,
52(1), Article 23.
https://doi.org/10.1186/s12711-020-00541-x
Calabrese, V., Scuto, M., Salinaro, A. T.
, Dionisio, G., Modafferi, S., Ontario, M. L., Greco, V., Sciuto, S., Schmitt, C. P., Calabrese, E. J. & Peters, V. (2020).
Hydrogen sulfide and carnosine: Modulation of oxidative stress and inflammation in kidney and brain axis.
Antioxidants,
9(12), 1-35. Article 1303.
https://doi.org/10.3390/antiox9121303
Zhang, Y., Ran, Y.
, Nagy, I., Lenk, I., Qiu, J. L.
, Asp, T., Jensen, C. S. & Gao, C. (2020).
Targeted mutagenesis in ryegrass (Lolium spp.) using the CRISPR/Cas9 system.
Plant Biotechnology Journal,
18(9), 1854-1856.
https://doi.org/10.1111/pbi.13359
Zhang, Q., Difford, G., Sahana, G., Løvendahl, P., Lassen, J., Lund, M. S., Guldbrandtsen, B. & Janss, L. (2020).
Bayesian modeling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows.
The ISME Journal,
14(8), 2019-2033.
https://doi.org/10.1038/s41396-020-0663-x
Zhang, Q., Cai, Z., Lhomme, M.
, Sahana, G., Lesnik, P., Guerin, M., Fredholm, M. & Karlskov-Mortensen, P. (2020).
Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels.
Scientific Reports,
10(1), Article 18434.
https://doi.org/10.1038/s41598-020-75612-6
Zaalberg, R. M., Buitenhuis, A. J., Sundekilde, U. K., Poulsen, N. A. & Bovenhuis, H. (2020).
Genetic analysis of orotic acid predicted with Fourier transform infrared milk spectra.
Journal of Dairy Science,
103(4), 3334-3348.
https://doi.org/10.3168/jds.2018-16057
Wu, X., Mesbah-Uddin, M., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2020).
Novel haplotypes responsible for prenatal death in Nordic Red and Danish Jersey cattle.
Journal of Dairy Science,
103(5), 4570-4578.
https://doi.org/10.3168/jds.2019-17831
Wang, X., Su, G., Hao, D., Lund, M. S. & Kadarmideen, H. N. (2020).
Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations.
Journal of Animal Science and Biotechnology,
11(1), Article 3.
https://doi.org/10.1186/s40104-019-0407-9
Wang, L., Janss, L. L., Madsen, P., Henshall, J., Huang, C.-H., Marois, D.
, Alemu, S., Sørensen, A. C. & Jensen, J. (2020).
Effect of genomic selection and genotyping strategy on estimation of variance components in animal models using different relationship matrices.
Genetics, selection, evolution : GSE,
52(1), Article 31.
https://doi.org/10.1186/s12711-020-00550-w
Tsai, H.-Y.
, Janss, L. L., Andersen, J. R., Orabi, J., Jensen, J. D., Jahoor, A.
& Jensen, J. (2020).
Genomic prediction and GWAS of yield, quality and disease-related traits in spring barley and winter wheat.
Scientific Reports,
10(1), Article 3347.
https://doi.org/10.1038/s41598-020-60203-2
Tsai, H.-Y.
, Cericola, F., Edriss, V., Andersen, J. R., Orabi, J.
, Jensen, J. D., Jahoor, A.
, Janss, L. & Jensen, J. (2020).
Use of multiple traits genomic prediction, genotype by environment interactions and spatial effect to improve prediction accuracy in yield data.
PLOS ONE,
15(5), Article e0232665.
https://doi.org/10.1371/journal.pone.0232665
Tessema, B. B., Liu, H., Sørensen, A. C., Andersen, J. R.
& Jensen, J. (2020).
Strategies Using Genomic Selection to Increase Genetic Gain in Breeding Programs for Wheat.
Frontiers in Genetics,
11, Article 578123.
https://doi.org/10.3389/fgene.2020.578123
Tausen, M., Clausen, M. M., Moeskjær, S., Shihavuddin, ASM., Dahl, A. B.
, Janss, L. & Andersen, S. U. (2020).
Greenotyper: Image-based plant phenotyping using distributed computing and deep learning.
Frontiers in Plant Science,
11, Article 1181.
https://doi.org/10.3389/fpls.2020.01181
Su, G., Sørensen, A. C., Chu, T. T., Meier, K., Nielsen, T.
& Lund, M. S. (2020).
Impact of phenotypic information and composition of reference population on genomic prediction in fish under the presence of genotype by environment interaction.
Aquaculture,
526, Article 735358.
https://doi.org/10.1016/j.aquaculture.2020.735358
Slagboom, M., Hjortø, L., Sørensen, A. C., Mulder, H. A.
, Thomasen, J. R. & Kargo, M. (2020).
Possibilities for a specific breeding program for organic dairy production.
Journal of Dairy Science,
103(7), 6332-6345.
https://doi.org/10.3168/jds.2019-16900
Skovbjerg, C. K., Knudsen, J. N.
, Füchtbauer, W., Stougaard, J., Stoddard, F. L.
, Janss, L. & Andersen, S. U. (2020).
Evaluation of yield, yield stability, and yield–protein relationship in 17 commercial faba bean cultivars.
Legume Science,
2(3), Article e39.
https://doi.org/10.1002/leg3.39
Schonherz, A. A., Bødker, J. S., Schmitz, A., Brøndum, R. F., Jakobsen, L. H.
, Roug, A. S., Severinsen, M. T., El-Galaly, T. C., Jensen, P., Johnsen, H. E.
, Bøgsted, M. & Dybkær, K. (2020).
Normal myeloid progenitor cell subsetassociated gene signatures for acute myeloid leukaemia subtyping with prognostic impact.
PLOS ONE,
15(4), Article e0229593.
https://doi.org/10.1371/journal.pone.0229593
Poulsen, B. G., Ask, B.
, Nielsen, H. M., Ostersen, T.
& Christensen, O. F. (2020).
Prediction of genetic merit for growth rate in pigs using animal models with indirect genetic effects and genomic information.
Genetics, selection, evolution : GSE,
52(1), Article 58.
https://doi.org/10.1186/s12711-020-00578-y
Morgante, F., Huang, W.
, Sørensen, P., Maltecca, C. & Mackay, T. F. C. (2020).
Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits.
G3 (Bethesda, Md.),
10(12), 4599-4613.
https://doi.org/10.1534/g3.120.401847
Mao, X., Sahana, G., Johansson, A. M.
, Liu, A., Ismael, A., Løvendahl, P., De Koning, D.-J.
& Guldbrandtsen, B. (2020).
Genome-wide association mapping for dominance effects in female fertility using real and simulated data from Danish Holstein cattle.
Scientific Reports,
10(1), Article 2953.
https://doi.org/10.1038/s41598-020-59788-5
Manzanilla-Pech, C. I. V., Gordo, D., Difford, G. F., Løvendahl, P. & Lassen, J. (2020).
Multitrait genomic prediction of methane emissions in Danish Holstein cattle.
Journal of Dairy Science,
103(10), 9195-9206.
https://doi.org/10.3168/jds.2019-17857
Malinowska, M., Nagy, I., Wagemaker, C. A. M.
, Ruud, A. K., Svane, S. F., Thorup-Kristensen, K., Jensen, C. S., Eriksen, B., Krusell, L., Jahoor, A., Jensen, J., Eriksen, L. B.
& Asp, T. (2020).
The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth.
The Plant Genome,
13(3), e20049. Article e20049.
https://doi.org/10.1002/tpg2.20049
Madsen, M. D., Villumsen, T. M., Hansen, B. K.
, Møller, S. H., Jensen, J. & Shirali, M. (2020).
Combined analysis of group recorded feed intake and individually recorded body weight and litter size in mink.
Animal : an international journal of animal bioscience,
14(9), 1793-1801.
https://doi.org/10.1017/S1751731120000762
Macedo, F. L.
, Christensen, O. F., Astruc, J.-M., Aguilar, I., Masuda, Y. & Legarra, A. (2020).
Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups.
Genetics, selection, evolution : GSE,
52(1), Article 47.
https://doi.org/10.1186/s12711-020-00567-1
Liu, T., Luo, C., Ma, J., Wang, Y., Shu, D.
, Su, G. & Qu, H. (2020).
High-Throughput Sequencing With the Preselection of Markers Is a Good Alternative to SNP Chips for Genomic Prediction in Broilers.
Frontiers in Genetics,
11, Article 108.
https://doi.org/10.3389/fgene.2020.00108
Liu, A., Lund, M. S., Boichard, D., Mao, X.
, Karaman, E., Fritz, S., Aamand, G. P., Wang, Y.
& Su, G. (2020).
Imputation for sequencing variants preselected to a customized low-density chip.
Scientific Reports,
10, Article 9524.
https://doi.org/10.1038/s41598-020-66523-7
Liu, A., Lund, M. S., Boichard, D.
, Karaman, E., Guldbrandtsen, B., Fritz, S., Aamand, G. P., Nielsen, U. S.
, Sahana, G., Wang, Y.
& Su, G. (2020).
Weighted single-step genomic best linear unbiased prediction integrating variants selected from sequencing data by association and bioinformatics analyses.
Genetics Selection Evolution,
52(1), Article 48.
https://doi.org/10.1186/s12711-020-00568-0
Li, J.
, Gao, H., Madsen, P., Li, R., Liu, W., Bao, P., Xue, G., Gao, Y., Di, X.
& Su, G. (2020).
Impact of the Order of Legendre Polynomials in Random Regression Model on Genetic Evaluation for Milk Yield in Dairy Cattle Population.
Frontiers in Genetics,
11, Article 586155.
https://doi.org/10.3389/fgene.2020.586155
Larsen, F., Guldbrandtsen, B., Christensen, D., Pitcovski, J.
, Kjærup, R. B. & Dalgaard, T. S. (2020).
Pustulan activates chicken bone marrow-derived dendritic cells in vitro and promotes ex vivo CD4+ T cell recall response to infectious bronchitis virus.
Vaccines,
8(2), Article 226.
https://doi.org/10.3390/vaccines8020226
Kamal, N.
, Mun, T., Reid, D., Lin, J.-S., Akyol, T. Y., Sandal, N., Asp, T., Hirakawa, H.
, Stougaard, J., Mayer, K. F. X., Sato, S.
& Andersen, S. U. (2020).
Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence.
D N A Research,
27(3), Article dsaa015.
https://doi.org/10.1093/dnares/dsaa015
Islam, M. S., Jensen, J., Løvendahl, P., Karlskov-Mortensen, P.
& Shirali, M. (2020).
Bayesian estimation of genetic variance and response to selection on linear or ratio traits of feed efficiency in dairy cattle.
Journal of Dairy Science,
103(10), 9150-9166.
https://doi.org/10.3168/jds.2019-17137
Huang, A., Zhi, D., Tang, H.
, Jiang, L., Luo, S. & Zhou, Y. (2020).
Effect of Fe2+, Mn2+ catalysts on the performance of electro-Fenton degradation of antibiotic ciprofloxacin, and expanding the utilizing of acid mine drainage.
Science of the Total Environment,
720, Article 137560.
https://doi.org/10.1016/j.scitotenv.2020.137560