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Publications

Peer-reviewed publications at QGG

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Sahana, J., Cortés-Sánchez, J. L., Sandt, V., Melnik, D., Corydon, T. J., Schulz, H., Cai, Z., Evert, K., Grimm, D. & Wehland, M. (2023). Long-Term Simulation of Microgravity Induces Changes in Gene Expression in Breast Cancer Cells. International Journal of Molecular Sciences , 24(2), Article 1181. https://doi.org/10.3390/ijms24021181
Long, E. M., Romay, M. C., Ramstein, G., Buckler, E. S. & Robbins, K. R. (2023). Utilizing evolutionary conservation to detect deleterious mutations and improve genomic prediction in cassava. Frontiers in Plant Science, 13, Article 1041925. https://doi.org/10.3389/fpls.2022.1041925
Yousaf, M. F., Zia, M. A. B. & Naeem, M. (2023). Application of SolCAP Genotyping in Potato (Solanum tuberosum L.) Association Mapping. In Y. Shavrukov (Ed.), Plant Genotyping (pp. 415-435). Humana Press. https://doi.org/10.1007/978-1-0716-3024-2_30
Karaman, E. (2023). Bayesian gene regulatory network inference using mixture priors. Abstract from 9th Nordic-Baltic Biometric Conference, Gothenburg, Sweden. https://ibsnbr.org/NBBC23/NBBC23_Abstracts.pdf
Karaman, E., Milkevych, V. & Janss, L. (2023). Biologically informed genomic predictions with the NextGP.jl statistical analysis package. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-936-7
Laursen, S. F., Hansen, L. S., Bahrndorff, S., Kargo, M., Nielsen, H. M., Sahana, G., Sørensen, J. G. & Kristensen, T. N. (2023). Breeding Insects for Food and Feed. Poster session presented at Agri Food and Climate Circle 2023, København, Denmark.
Kargo, M., Buitenhuis, A. J., Kristensen, T., Nielsen, H. M., Østergaard, S., Munk, A. & Vestergaard, M. (2023). Climate beef – by more beef based on the dairy cow. Abstract from International Agri Food & Climate Circle 2023, Copenhagen, Denmark.
Lassen, I. M. S., Almasi, M., Enevoldsen, K. & Kristensen-McLachlan, R. D. (2023). Detecting intersectionality in NER models: A data-driven approach. In EACL 2023 - 7th Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature, Proceedings of LaTeCH-CLfL 2023 (pp. 116-127). Association for Computational Linguistics. https://doi.org/10.18653/v1/2023.latechclfl-1.13
Nielsen, H. M., Kristensen, T. N., Sahana, G., Laursen, S. F., Bahrndorff, S., Sørensen, J. G. & Hansen, L. S. (2023). Expected response to selection on larval size and development time in the housefly (Musca domestica). Abstract from
74th Annual Meeting of European Federation of Animal Science, Lyon, France.
Hansen, L. S., Bouwman, A. C., Nielsen, H. M., Sahana, G. & Ellen, E. D. (2023). Full-sib group records as a practical alternative to individual records in insect breeding. Abstract from
74th Annual Meeting of European Federation of Animal Science, Lyon, France.
Tenhunen, S. R., Thomasen, J. R., Sørensen, L. P., Berg, P. & Kargo, M. (2023). Genomic selection has aided Nordic Jersey to decrease risks of inbreeding. 393. Abstract from
74th Annual Meeting of European Federation of Animal Science, Lyon, France.
Manzanilla Pech, C. I. V., Stephansen, R. B. & Lassen, J. (2023). Heterogeneity of 3D cameras feed intake heritabilities in first parity Holstein, Jersey and Nordic Red cows. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science : EAAP Book of Abstracts, Volume 29 Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-936-7
Hellwing, A. L. F., Vestergaard, M. & Kargo, M. (2023). Methane emission from purebred Holstein, Nordic Red and F1 crossbred cows of the two breeds. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science (pp. 937-937). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-936-7
Slagboom, M., Nielsen, H. M., Kargo, M., Henryon, M. & Hansen, L. S. (2023). Simulating breeding programs based on mass selection in black soldier fly (Hermetia illucens). Abstract from
74th Annual Meeting of European Federation of Animal Science, Lyon, France.
Persichilli, C., Karaman, E., Finocchiaro, R., Pilla, F., Fabris, A., Visentin, G. & Cassandro, M. (2023). Study of fertility traits in Italian Jersey Cattle. Italian Journal of Animal Science, 22(sup1), 41. Article 0563. https://aspacongress2023.com/wp-content/uploads/2023/06/ASPA-25th-Congress-Book-of-Abstract_compressed.pdf
Saedi, N., Lund, M. S. & Karaman, E. (2023). Using genomic markers and microbiome data to predict methane emissions from Holstein cows. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-936-7
Chen, S., Liu, S., Shi, S., Jiang, Y., Cao, M., Tang, Y., Li, W., Liu, J., Fang, L., Yu, Y. & Zhang, S. (2022). Comparative epigenomics reveals the impact of ruminant-specific regulatory elements on complex traits. BMC Biology, 20(1), 273. Article 273. https://doi.org/10.1186/s12915-022-01459-0
Yang, W., Yu, J., Yao, Y., Chen, S., Zhao, B., Liu, S., Zhou, L., Fang, L. & Liu, J. (2022). Comparative immune-relevant transcriptome reveals the evolutionary basis of complex traits. iScience, 25(12), Article 105572. https://doi.org/10.1016/j.isci.2022.105572
Yao, Y., Liu, S., Xia, C., Gao, Y., Pan, Z., Canela-Xandri, O., Khamseh, A., Rawlik, K., Wang, S., Li, B., Zhang, Y., Pairo-Castineira, E., D’Mellow, K., Li, X., Yan, Z., Li, C. J., Yu, Y., Zhang, S., Ma, L. ... Tenesa, A. (2022). Comparative transcriptome in large-scale human and cattle populations. Genome Biology, 23(1), Article 176. https://doi.org/10.1186/s13059-022-02745-4
Wang, B., Li, P., Hou, L., Zhou, W., Tao, W., Liu, C., Liu, K., Niu, P., Zhang, Z., Li, Q., Su, G. & Huang, R. (2022). Genome-wide association study and genomic prediction for intramuscular fat content in Suhuai pigs using imputed whole-genome sequencing data. Evolutionary Applications, 15(12), 2054-2066. https://doi.org/10.1111/eva.13496
Kingsley, N. B., Sandmeyer, L., Norton, E. M., Speed, D., Dwyer, A., Lassaline, M., McCue, M. & Bellone, R. R. (2022). Heritability of insidious uveitis in Appaloosa horses. Animal Genetics, 53(6), 872-877. https://doi.org/10.1111/age.13267
Martinez Boggio, G., Meynadier, A., Buitenhuis, A. J. & Marie-Etancelin, C. (2022). Host genetic control on rumen microbiota and its impact on dairy traits in sheep. Genetics, selection, evolution : GSE, 54(1), Article 77. https://doi.org/10.1186/s12711-022-00769-9
Grace, C. A., Sousa Carvalho, K. S., Sousa Lima, M. I., Costa Silva, V., Reis-Cunha, J. L., Brune, M. J., Forrester, S., Pedrozo E Silva de Azevedo, C. D. M., Costa, D. L., Speed, D., Mottram, J. C., Jeffares, D. C. & Costa, C. H. N. (2022). Parasite Genotype Is a Major Predictor of Mortality from Visceral Leishmaniasis. mBio, 13(6), e0206822. https://doi.org/10.1128/mbio.02068-22
Bolormaa, S., MacLeod, I. M., Khansefid, M., Marret, L., Wales, B., Miglior, F., Baes, C. F., Schenkel, F. S., Connor, E. E., Manzanilla Pech, C. I. V., Coffey, M., Stothard, P., Herman, E., Nieuwhof, G. J., Goddard, M. E. & Pryce, J. (2022). Sharing of either phenotypes or genetic variants can increase the accuracy of genomic prediction of feed efficiency. Genetics Selection Evolution, 54(1), Article 60. https://doi.org/10.1186/s12711-022-00749-z
Sawant, M., Patil, R., Shikhare, T., Nagle, S., Chavan, S., Negi, S. & Bokde, N. D. (2022). A Selective Review on Recent Advancements in Long, Short and Ultra-Short-Term Wind Power Prediction. Energies, 15(21), Article 8107. https://doi.org/10.3390/en15218107
Dharmateja, P., Yadav, R., Kumar, M., Babu, P., Jain, N., Mandal, P. K., Pandey, R., Shrivastava, M., Gaikwad, K. B., Bainsla, N. K., Tomar, V., Sugumar, S., Saifi, N. & Ranjan, R. (2022). Genome-wide association studies reveal putative QTLs for physiological traits under contrasting phosphorous conditions in wheat (Triticum aestivum L.). Frontiers in Genetics, 13, Article 984720. https://doi.org/10.3389/fgene.2022.984720
Saintilan, R., Croiseau, P., Baur, A., Croue, I., Ducrocq, V., Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022). Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). In Proceedings of the 2022 Interbull Meeting (pp. 18-22) https://journal.interbull.org/index.php/ib
Liu, S., Gao, Y., Canela-Xandri, O., Wang, S., Yu, Y., Cai, W., Li, B., Xiang, R., Chamberlain, A. J., Pairo-Castineira, E., D'Mellow, K., Rawlik, K., Xia, C., Yao, Y., Navarro, P., Rocha, D., Li, X., Yan, Z., Li, C. ... Fang, L. (2022). A multi-tissue atlas of regulatory variants in cattle. Nature Genetics, 54(9), 1438-1447. https://doi.org/10.1038/s41588-022-01153-5
Manzanilla Pech, C. I. V., Stephansen, R. B. & Lassen, J. (2022). Breeding for feed efficient and low methane-emitting dairy cows is feasible. Abstract from 73 Annual Meeting of the European Federation of Animal Science, Porto, Portugal.
Marašinskienė, Š., Šveistienė, R., Kosińska-Selbi, B., Schmidtmann, C., Ettema, J. F., Juškienė, V. & Kargo, M. (2022). Application of a Bio-Economic Model to Demonstrate the Importance of Health Traits in Herd Management of Lithuanian Dairy Breeds. Animals, 12(15), Article 1926. https://doi.org/10.3390/ani12151926
Zhang, H., Wang, K., An, T., Zhu, L., Chang, Y., Lou, W., Liu, L., Guo, G., Liu, A., Su, G., Brito, L. F. & Wang, Y. (2022). Genetic parameters for dairy calf and replacement heifer wellness traits and their association with cow longevity and health indicators in Holstein cattle. Journal of Dairy Science, 105(8), 6749-6759. https://doi.org/10.3168/jds.2021-21450
Consortium, V. G., Nijman, I. J., Rosen, B. D., Bardou, P., Faraut, T., Cumer, T., Daly, K. G., Zheng, Z., Cai, Y., Asadollahpour, H., Kul, B. Ç., Zhang, W.-Y., Guangxin, E., Ayin, A., Baird, H., Bakhtin, M., Bâlteanu, V. A., Barfield, D., Berger, B. ... Lenstra, J. A. (2022). Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. Molecular Ecology, 31(16), 4364-4380. https://doi.org/10.1111/mec.16579
Gredler-Grandl, B., Raymond, B., Schopen, G. C. B., Chitneedi, P. K., Cai, Z., Manzanilla Pech, C. I. V., Iso-Touru, T., Fischer, D., Bolormaa, S., Chud, T. C. S., Schenkel, F. S., Wang, Y., Li, C., Hailemariam, D., Villanueva, B., Fernandez, A., Kuehn, C., Sahana, G., Lidauer, M. ... Bouwman, A. C. (2022). Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_010.pdf
Nagy, I., Veeckman, E., Liu, C., Bel, M. V., Vandepoele, K., Jensen, C. S., Ruttink, T. & Asp, T. (2022). Chromosome-scale assembly and annotation of the perennial ryegrass genome. BMC Genomics, 23(1), Article 505. https://doi.org/10.1186/s12864-022-08697-0
Martinez Boggio, G., Meynadier, A., Rupp, R., Allain, C., Buitenhuis, A. J. & Marie-Etancelin, C. (2022). Evidence of genetic links between rumen bacteria and milk somatic cell score in Lacaune dairy sheep. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/66_004.pdf
Martinez Boggio, G., Christensen, O. F., Legarra, A., Allain, C., Meynadier, A. & Marie-Etancelin, C. (2022). Rumen bacteria do not provide improved genetic evaluation of dairy traits in sheep. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/05_009.pdf
Schmidtmann, C., Slagboom, M., Sørensen, A. C., Hinrichs, D., Thaller, G. & Kargo, M. (2022). Short- and long-term consequences of collaboration between Northern European Red dairy and dual-purpose cattle. Journal of Animal Breeding and Genetics, 139(4), 447-461. https://doi.org/10.1111/jbg.12672