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Publications

Peer-reviewed publications at QGG

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Jensen, J. (2022). Word of thanks to professor Ignacy Misztal. Journal of Animal Breeding and Genetics, 139(4), 369-369. https://doi.org/10.1111/jbg.12725
Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, L., Fei, Z., Städler, T., Xu, S. ... Huang, S. (2022). Graph pangenome captures missing heritability and empowers tomato breeding. Nature, 606(7914), 527-534. https://doi.org/10.1038/s41586-022-04808-9
Salunke, S., Ahuja, B., Hashmi, M. F., Marriboyina, V. & Bokde, N. D. (2022). 5D Gauss Map Perspective to Image Encryption with Transfer Learning Validation. Applied Sciences, 12(11), Article 5321. https://doi.org/10.3390/app12115321
Shende, M. K., Salih, S. Q., Bokde, N. D., Scholz, M., Oudah, A. Y. & Yaseen, Z. M. (2022). Natural Time Series Parameters Forecasting: Validation of the Pattern-Sequence-Based Forecasting (PSF) Algorithm; A New Python Package. Applied Sciences (Switzerland), 12(12), Article 6194. https://doi.org/10.3390/app12126194
Sterenborg, R. B. T. M., Galesloot, T. E., Teumer, A., Netea-Maier, R. T., Speed, D., Meima, M. E., Visser, W. E., Smit, J. W. A., Peeters, R. P. & Medici, M. (2022). The effects of common genetic variation in 96 genes involved in thyroid hormone regulation on TSH and FT4 concentrations. The Journal of Clinical Endocrinology & Metabolism, 107(6), e2276-e2283. https://doi.org/10.1210/clinem/dgac136
Sammad, A., Zhang, H., Shi, R., Dong, Y., Luo, H., Chen, Z., Liu, L., Guo, G., Liu, A. & Wang, Y. (2022). A Post-GWAS Functional Analysis Confirming Effects of Three BTA13 Genes CACNB2, SLC39A12, and ZEB1 on Dairy Cattle Reproduction. Frontiers in Genetics, 13, Article 882951. https://doi.org/10.3389/fgene.2022.882951
Velasco-Galilea, M., Buitenhuis, A. J., Ramayo-Caldas, Y., Ballester, M., Piles, M. & Sanchez, J. P. (2022). GENOMIC REGIONS OF MEAT RABBIT INVOLVED IN THE VARIATION OF ITS CAECAL MICROBIOTA. In 46 Symposium de Cunicultura - Proceedings https://asescu.com/wp-content/uploads/2023/05/Libro-de-Actas_46-Symposium-Cunicultura-2022-1.pdf
Croiseau, P., Saintilan, R., Baur, A., Croue, I., Ducrocq, V., Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022). Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_001.pdf
Speed, D., Kaphle, A. & Balding, D. J. (2022). SNP-based heritability and selection analyses: Improved models and new results. BioEssays, 44(5), e2100170. Article 2100170. https://doi.org/10.1002/bies.202100170
Barre, P., Asp, T., Byrne, S., Casler, M., Faville, M., Rognli, O. A., Roldan-Ruiz, I., Skøt, L. & Ghesquière, M. (2022). Genomic Prediction of Complex Traits in Forage Plants Species: Perennial Grasses Case. In Methods in Molecular Biology (pp. 521-541). Humana Press Inc. https://doi.org/10.1007/978-1-0716-2205-6_19
Chen, C. J., Garrick, D., Fernando, R., Karaman, E., Stricker, C., Keehan, M. & Cheng, H. (2022). XSim Version 2: Simulation of Modern Breeding Programs. G3: Genes, Genomes, Genetics, 12(4), Article jkac032. https://doi.org/10.1093/g3journal/jkac032
Mallawaarachchi, S., Tonkin-Hill, G., Croucher, N. J., Turner, P., Speed, D., Corander, J. & Balding, D. (2022). Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae. NAR Genomics & Bioinformatics, 4(1), Article lqac011. https://doi.org/10.1093/nargab/lqac011
Alemu, S. W., Bijma, P., Calus, M. P. L., Liu, H., Fernando, R. L. & Dekkers, J. C. M. (2022). Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations. Genetics Selection Evolution, 54(1), Article 12. https://doi.org/10.1186/s12711-022-00703-z
Lu, X., Arbab, A. A. I., Abdalla, I. M., Liu, D., Zhang, Z., Xu, T., Su, G. & Yang, Z. (2022). Genetic Parameter Estimation and Genome-Wide Association Study-Based Loci Identification of Milk-Related Traits in Chinese Holstein. Frontiers in Genetics, 12, Article 799664. https://doi.org/10.3389/fgene.2021.799664
Islam, M. S., Van der Werf, JHJ., Henryon, M., Chu, T. T., Wood, B. J. & Hermesch, S. (2022). Genotyping dead animals improves post-weaning survival of pigs in breeding programs. In WCGALP2022 Programme book Wageningen Academic Publishers. https://wcgalp.com/wp-content/uploads/2022/07/e-WCGALP22-programme-booklet.pdf
Nielsen, B., Horndrup, L. V. & Ask, B. (2022). Modeller for social genetiske effekter hos grise og betydningen for dyrevelfærd. In Symposium i anvendt statistik (pp. 126-128). SEGES Innovation. http://www.statistiksymposium.dk/Symposium%202022_Web.pdf
Clasen, J. B., Nielsen, H. M., Hein, L., Johansen, K., Vestergaard, M. & Kargo, M. (2022). Performance of first parity Holstein, Danish Red and their crosses in an experimental setting. In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (EAAP): Book of abstracts No. 28 (2022) (pp. 671). Wageningen Academic Publishers. https://www.eaap2022.org/docs/AbstractBookEAAP.pdf
Kempe, R. M., Mehtiö, T., Leino, A.-M., Koivula, M., Pitkänen, T. J., Stephansen, R. B., Mäntysaari, P., Negussie, E., Pösö, J., Nielsen, U. S., Fikse, W. F., Aamand, G. P. & Lidauer, M. H. (2022). Single-step genomic prediction for metabolic body weight of Nordic Red dairy cattle. In WCGALP 2022: Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/14_005.pdf
Econogene Consortium, Ajmone-Marsan, P., Bradley, D. G., Colli, L., Drögemüller, C., Lei, C., Mannen, H., Pompanon, F., Tosser-Klopp, G. & Jiang, Y. (2022). Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. In R. F. Veerkamp & Y. de Haas (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges (pp. 886-889). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_208
Pan, Z., Yao, Y., Yin, H., Cai, Z., Wang, Y., Bai, L., Kern, C., Halstead, M., Chanthavixay, G., Trakooljul, N., Wimmers, K., Sahana, G., Su, G., Lund, M. S., Fredholm, M., Karlskov-Mortensen, P., Ernst, C. W., Ross, P., Tuggle, C. K. ... Zhou, H. (2021). Pig genome functional annotation enhances the biological interpretation of complex traits and human disease. Nature Communications, 12(1), Article 5848. https://doi.org/10.1038/s41467-021-26153-7
Madsen, M. D., van der Werf, J., Börner, V., Mulder, H. A. & Clark, S. (2021). Estimation of macro- and micro-genetic environmental sensitivity in unbalanced datasets. Animal, 15(12), Article 100411. https://doi.org/10.1016/j.animal.2021.100411
Washburn, J. D., Cimen, E., Ramstein, G., Reeves, T., O’Briant, P., McLean, G., Cooper, M., Hammer, G. & Buckler, E. S. (2021). Predicting phenotypes from genetic, environment, management, and historical data using CNNs. Theoretical and Applied Genetics, 134(12), 3997-4011. https://doi.org/10.1007/s00122-021-03943-7
Salimiyekta, Y., Vaez‐torshizi, R., Abbasi, M. A., Emmamjome‐kashan, N., Amin‐afshar, M., Guo, X. & Jensen, J. (2021). Random regression model for genetic evaluation and early selection in the iranian holstein population. Animals, 11(12), Article 3492. https://doi.org/10.3390/ani11123492
Bauer, M., Glenn, T., Achtyes, E. D., Alda, M., Agaoglu, E., Altınbaş, K., Andreassen, O. A., Angelopoulos, E., Ardau, R., Vares, E. A., Aydin, M., Ayhan, Y., Baethge, C., Bauer, R., Baune, B. T., Balaban, C., Becerra-Palars, C., Behere, A. P., Behere, P. B. ... Whybrow, P. C. (2021). Variations in seasonal solar insolation are associated with a history of suicide attempts in bipolar I disorder. International Journal of Bipolar Disorders, 9(1), Article 26. https://doi.org/10.1186/s40345-021-00231-7
Bellamy, K. K. L., Lingaas, F. & Madsen, P. (2021). Heritability of distichiasis in Havanese dogs in Norway. Canine medicine and genetics, 8(1), Article 11. https://doi.org/10.1186/s40575-021-00110-5
Manzanilla Pech, C. I. V., Stephansen, R. B. & Lassen, J. (2021). Genetic parameters for feed efficiency using 3D cameras in jersey cows in commercial Danish farms. In Proceedings of the Association for the Advancement of Animal Breeding and Genetics (pp. 226-229). Association for the Advancement of Animal Breeding and Genetics. http://www.aaabg.org/aaabghome/AAABG24papers/57Pech24226.pdf
Kramer, L. M., Wolc, A., Esfandyari, H., Thekkoot, D. M., Zhang, C., Kemp, R. A., Plastow, G. & Dekkers, J. C. M. (2021). Purebred-crossbred genetic parameters for reproductive traits in swine. Journal of Animal Science, 99(10), Article skab270. https://doi.org/10.1093/jas/skab270
Eydivandi, S., Roudbar, M. A., Ardestani, S. S., Momen, M. & Sahana, G. (2021). A selection signatures study among Middle Eastern and European sheep breeds. Journal of Animal Breeding and Genetics, 138(5), 574-588. https://doi.org/10.1111/jbg.12536, https://doi.org/10.1111/jbg.12536
Handegård, K. W., Madsen, P., Storengen, L. M. & Lingaas, F. (2021). Genetic parameters for noise reactivity in standard poodles. Journal of Veterinary Behavior, 45, 33-36. https://doi.org/10.1016/j.jveb.2021.06.005
De, T., Goncalves, A., Speed, D., Froguel, P., NFBC consortium, Gaffney, D. J., Johnson, M. R., Jarvelin, M.-R. & Coin, L. J. (2021). Signatures of TSPAN8 variants associated with human metabolic regulation and diseases. iScience, 24(8), Article 102893. https://doi.org/10.1016/j.isci.2021.102893
Manzanilla Pech, C. I. V., Løvendahl, P., Mansan Gordo, D. G., Difford, G., Pryce, J., Schenkel, F. S., Wegmann, S., Miglior, F., Chud, T. C. S., Moate, P. J., Williams, S. R. O., Richardson, C. M., Stothard, P. & Lassen, J. (2021). Breeding for reduced methane emission and feed-efficient Holstein cows: An international response. Journal of Dairy Science, 104(8), 8983-9001. https://doi.org/10.3168/jds.2020-19889
Johansen, K., Hein, L., Spleth, P., Vestergaard, M., Nielsen, H. M. & Kargo, M. (2021). Comparing growth and feed intake in pure- and crossbred heifers fed different energy concentrations. In E. Strandberg, L. Pinotti, S. Messori, D. Kenny, M. Lee, J. F. Hocquette, V. A. P. Cadavez, S. Millet, R. Evans, T. Veldkamp, M. Pastell & G. Pollott (Eds.), Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science (pp. 521). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-918-3
Zaalberg, R. M., Chu, T. T., Villumsen, T. M. & Jensen, J. (2021). Genetic parameters for birth weight and litter size in Danish organic pigs. In Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science (Vol. 27). Wageningen Academic Publicers. https://doi.org/10.3920/978-90-8686-918-3
Villumsen, T. M., Chu, T. T., Zaalberg, R. M. & Jensen, J. (2021). Genetic parameters for growth rate in Danish organic pigs. In Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science (Vol. 27). Wageningen Academic Publicers. https://doi.org/10.3920/978-90-8686-918-3
Chu, T. T., Zaalberg, R. M., Villumsen, T. M. & Jensen, J. (2021). Genetic parameters of piglet mortality in Danish organic pigs. In Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science (Vol. 27). Wageningen Academic Publicers. https://doi.org/10.3920/978-90-8686-918-3
Cuyabano, B. C. D., Rovere, G., Lim, D., Kim, T. H., Lee, H. K., Lee, S. H. & Gondro, C. (2021). GPS coordinates for modelling correlated herd effects in genomic prediction models applied to Hanwoo beef cattle. Animals, 11(7), Article 2050. https://doi.org/10.3390/ani11072050
Kargo, M. & Nielsen, V. H., (2021). Vurdering af racespecifikke krav til Jysk Kvæg, No. 2021-0203800, 11 p., Jun 23, 2021. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug