Publikationer

Peer-reviewed publikationer ved QGG

Lissner, E. S., Janns, L., Thorsen, M. & Blicher-Mathiesen, G., (2025). Kvælstofmarkbalancer og nitratudvaskning: Modellering på data fra Landovervågningen, 39 s., Fagligt notat fra DCE – Nationalt Center for Miljø og Energi Nr. 73 https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Notater_2025/N2025_73.pdf

Lassen, J., Stephansen, R. B., Kupisiewicz, K. & Bengtson, C. (2025). Large-scale measured body weight changes effect on yield, health, reproduction, and feed efficiency in 3 different dairy cattle breeds. I Abstracts of the 2025 American Dairy Science Association® Annual Meeting (s. 160-160). Artikel 1550 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Hof, J. P. & Speed, D. (2025). LDAK-KVIK performs fast and powerful mixed-model association analysis of quantitative and binary phenotypes. Nature Genetics, 57(9), 2116-2123. https://doi.org/10.1038/s41588-025-02286-z

Li, P., Li, Z., Ying, F., Zhu, D., Liu, D., Song, X., Wen, J., Zhao, G. & An, B. (2025). Leveraging ultrasonic-derived phenotypes and estimated breeding value to improve abdominal fat weight prediction in chickens throughout the egg laying period. Smart Agricultural Technology, 11, Artikel 100912. https://doi.org/10.1016/j.atech.2025.100912

Xi, Y., Qi, J., Yang, Z., Zeng, Y., Zhang, H., Tao, Q., Xu, M., Huang, A., Hu, S., Han, C., Bai, L., Hu, J., Wang, J., Li, L., Fang, L. & Liu, H. (2025). Mapping multitissue regulatory variants reveals a liver-centric coexpression network associated with duck egg-laying performance. Genome Research, 35(10), 2211-2225. https://doi.org/10.1101/gr.280345.124

Zhang, Q., Cui, B., Dong, X., Lv, W., Xie, X., Wang, Y., Guo, Z. & Jensen, J. (2025). Mapping of identity by descent reveals genes shaping morphology and biological traits in the cultivated lettuce varieties during the long-term crossbreeding. Theoretical and Applied Genetics, 138(5), Artikel 99. https://doi.org/10.1007/s00122-025-04879-y

Zhu, X., Li, C., Luo, C., Bai, Z., Shu, D., Chen, P., Ren, J., Song, R., Fang, L., Qu, H., Wang, Y. & Hu, X. (2025). Mapping the regulatory genetic landscape of complex traits using a chicken advanced intercross line. Nature Communications, 16(1), Artikel 5841. https://doi.org/10.1038/s41467-025-60834-x

Chegini, A., Strandén, I., Karaman, E., Iso-Touru, T., Pösö, J., Aamand, G. P. & Lidauer, M. H. (2025). Marker weighting improves single-step genomic prediction reliabilities of udder health traits in Nordic Red and Jersey dairy cattle populations. Journal of Dairy Science, 108(1), 651-663. https://doi.org/10.3168/jds.2024-25374, https://doi.org/10.3168/jds.2024-25374

iPSYCH-MINERvA Group (2025). Maternal asthma and newborn DNA methylation. Clinical Epigenetics, 17(1), Artikel 79. https://doi.org/10.1186/s13148-025-01858-4

Guo, X., Sarup, P., Bay Nord, A., Henryon, M., Ostersen, T. & Christensen, O. F. (2025). Metabolomic-genomic prediction realizes small increases in accuracy of estimated breeding values for daily gain in pigs. Genetics Selection Evolution, 57(1), Artikel 24. https://doi.org/10.1186/s12711-025-00972-4

González-Recio, O., Pryce, J., Rowe, S., Sahana, G. & Gredler-Grandl, B. (2025). MicroHUB: An international initiative to modulate the rumen microbiome for methane mitigation. 136. Abstract fra The 76th EAAP Annual Meeting, Innsbruck , Østrig. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Hjelholt, A. J., Gholipourshahraki, T., Bai, Z., Shrestha, M., Kjolby, M., Sørensen, P. & Rohde, P. D. (2025). mLeveraging genetic correlations to prioritize drug groups for repurposing in type 2 diabetes. Pharmacogenomics Journal, 25(6), Artikel 33. https://doi.org/10.1038/s41397-025-00392-z

Stephansen, R. B., Lassen, J., Thorup, V. M., Poulsen, B. G., Jensen, J., Sahana, G. & Christensen, O. F. (2025). Modeling Feed Efficiency over Productive Lifetime and Integrating a Sub-Model for Body Reserve Management in Nordic Dairy Cattle. Journal of Dairy Science, 108(2), 1757-1777. https://doi.org/10.3168/jds.2024-25383, https://doi.org/10.3168/jds.2024-25383

Bouquet, A. E. R., Kargo, M., Thorup, V. M., Chen, L., Østergaard, S. & Stephansen, R. B. (2025). Modelling feed efficiency in dairy cows for selection and management decisions. I Book of Abstracts - 76th Annual Meeting of the European Federation of Animal Science (EAAP) (s. 362). Artikel Theatre 5.

Barboza Bispo, R., Teixeira do Amaral Junior, A., Santos, T. D. O., de Lima, V. J., Simão, B. R., Freitas, M. S. M., Kamphorst, S. H., Carvalho, C. M., Lamêgo, D. L., Nicácio Viana, F., Bernardo, W. D. P., Campostrini, E. & Bressan-Smith, R. (2025). Morphophysiological approach to heterosis in phosphorus use efficiency in popcorn. Cogent Food & Agriculture, 11(1), Artikel 2452347. https://doi.org/10.1080/23311932.2025.2452347

Yin, H., Yang, L., Zhao, Q., Yao, W., Teng, J., Gao, Y., Xu, Z., Lin, Q., Diao, S., Liu, X., Zhao, F., Zhou, Z., Wang, Q., Li, J., Zhang, Z., Zhou, H., Groenen, M. A. M., Madsen, O., Bai, L. ... Li, K. (2025). Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs. BMC Biology, 23(1), Artikel 188. https://doi.org/10.1186/s12915-025-02279-8

Skovbjerg, C. K., Sarup, P. M., Wahlström, E., Jensen, J. D., Orabi, J., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program. Heredity, 134(1), 33-48. Artikel 63. https://doi.org/10.1038/s41437-024-00733-x

Laursen, S. F., Nielsen, H. M., Bahrndorff, S., Sahana, G., Sørensen, J. G., Kristensen, T. N. & Hansen, L. S. (2025). Multi-trait pedigree-based selective breeding to optimise farmed insects: Evidence from a house fly population. Journal of Insects as Food and Feed, 11(16), 3017-3032. https://doi.org/10.1163/23524588-bja10247

Ye, X., Sahana, G., Lund, M. S., Li, B. & Cai, Z. (2025). Network analyses unraveled the complex interactions in the rumen microbiota associated with methane emission in dairy cattle. Animal Microbiome, 7(1), Artikel 24. https://doi.org/10.1186/s42523-025-00386-z

Stephansen, R. B., Jensen, J., Poulsen, B. G., Nielsen, U. S., Andersen, T., Rius-Vilarrasa, E., F. Fikse, W., Pösö, J., Lidauer, M. H., Negussie, E., Lassen, J. & von Unge, F. (2025). Nordic Genetic Evaluation of Feed Efficiency – Updated Model for Saved Feed in Nordic Dairy Cattle Breeds. I Proceedings of the 2025 Interbull Meeting (s. 224-230) https://journal.interbull.org/index.php/ib/issue/view/73/8

Zhao, Q., Liu, H., Zhang, Q., Qadri, Q. R., Pan, Y., Su, G., Li, P. & Huang, R. (2025). Optimal Combination of Different Selection and Mating Strategies on Exploiting Genetic Diversity and Genetic Gain in Small Pig Conservation Populations. Journal of Animal Breeding and Genetics, 142(4), 444-453. https://doi.org/10.1111/jbg.12917

Kristensen, P. S., Chu, T. T., Sarup, P., Orabi, J., Mohlfeld, M., Jahoor, A. & Jensen, J. (2025). Optimizing hybrid rye breeding programs using simulations. 26. Abstract fra International Symposium on Rye Breeding and Genetics, Tartu, Estland. https://www.ryest2025.ee/userfiles/ryest2025/RYEST_abstract_book_2025_2.pdf

Tenhunen, S. R., Thomasen, J. R., Sørensen, L. P., Berg, P., Kargo, M., Nielsen, H. M. & Gorjanc, G. (2025). Optimizing Relatedness Penalties in Multi-Stage Optimal Contribution in Dairy Cattle Breeding Programs. I Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Bind 39, s. 334)

Chen, M. Y., Fulton, L. M., Huang, I., Liman, A., Hossain, S. S., Hamilton, C. D., Song, S., Geissmann, Q., King, K. C. & Haney, C. H. (2025). Order among chaos: High throughput MYCroplanters can distinguish interacting drivers of host infection in a highly stochastic system. PLoS Pathogens, 21(2 February), Artikel e1012894. Advance online publication. https://doi.org/10.1371/journal.ppat.1012894

Berrandou, T. E., Cordina-Duverger, E., Mulot, C., Guizard, A. V., Schvartz, C., Laurent-Puig, P., Zidane, M., De Vathaire, F., Guénel, P. & Truong, T. (2025). Polymorphisms in circadian rhythm genes and the risk of differentiated thyroid cancer. Frontiers in Genetics, 16, Artikel 1539090. https://doi.org/10.3389/fgene.2025.1539090

Nielsen, B., Kristensen, P. S., Sarup, P., Bjarup, P. & Orabi, J. (2025). Power calculations for testing genetic correlation between pure- and mixture line effects in wheat breeding. I EUCARPIA Biometrics in Plant Breeding, September 2025 (s. 30) https://highlanderlab.github.io/EUCARPIA2025BiometricsPlantBreeding/assets/pdf/EUCARPIA_Programme_Booklet_web.pdf

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Prediction of black soldier fly larval sex and morphological traits using computer vision and deep learning. Smart Agricultural Technology, 11, Artikel 100953. https://doi.org/10.1016/j.atech.2025.100953

Buitenhuis, A. J., Noel, S. J., Sørensen, A. C., Christensen, O. F. & Knudsen, K. E. B. (2025). Prediction of feed nitrogen and energy digestibility in pigs using fecal based NIR spectroscopy. I Book of abstracts of the 76th Annual Meeting of the European Federation of Animal Science (EAAP) (s. 230). EAAP. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Guillenea Golovanevsky, A. C., Cuyabano, B. C. D., Croiseau, P., Lund, M. S. & Karaman, E. (2025). QTL detection in multi-breed cattle populations including crossbred animals: a simulation study. Animal, 19(10), Artikel 101639. https://doi.org/10.1016/j.animal.2025.101639

Yousaf, M. F., Naeem, M. & Bakar Zia, M. A. (2025). QTL Mapping for Drought Tolerance in Vegetables. I U. K. Chaudhry, Z. N. Öztürk & A. F. Gökçe (red.), Drought Stress: Review and Recommendations (s. 369-392). Springer Nature. https://doi.org/10.1007/978-3-031-80610-0_14

Yousaf, M. F., Tomar, V., Romé, H., Bagge, M., Timmermann, M., Chu, T. T. & Jensen, J. (2025). Rate of double reduction and genetic variability in yield, quality, and senescence related traits in tetraploid potato (Solanum tuberosum L.). Frontiers in Plant Science, 16, Artikel 1560123. https://doi.org/10.3389/fpls.2025.1560123

Balding, D. J. & Speed, D. (2025). Recent Statistical Innovations in Human Genetics. Annals of Human Genetics, 89(5), 241-254. https://doi.org/10.1111/ahg.12606

Johansen, K. K., Kargo, M., Christensen, O. F., Bjerring, M., Løvendahl, P. & Buitenhuis, A. J. (2025). Repeatability and genetic parameters for phenotypes of methane emission in crossbred beef×dairy slaughter calves. Animal : an international journal of animal bioscience, 19(4), 101478. Artikel 101478. https://doi.org/10.1016/j.animal.2025.101478

Ithurbide, M., Bouquet, A., Rupp, R., Puillet, L. & Friggens, N. C. (2025). Resilience and Robustness in the Service of Longevity and Sustainable Efficiency in Dairy Production. Annual Review of Animal Biosciences, 14. Advance online publication. https://doi.org/10.1146/annurev-animal-041125-111332

Iso-Touru, T., Fischer, D., Panitz, F., Taponen, S., Cai, Z., Sahana, G., Tapio, I. & Vilkki, J. (2025). Response of primary mammary epithelial cells to pathogen challenge in dairy cows with divergent genomic breeding values for udder health. Genomics, 117(5), Artikel 111102. https://doi.org/10.1016/j.ygeno.2025.111102

Yu, X., Faggion, S., Liu, Y., Wang, B., Zeng, Q., Lu, C., Hu, J., Bargelloni, L., Fang, L. & Bao, Z. (2025). Role of multi-omics in aquaculture genetics and breeding: current status and future perspective. Science China Life Sciences, 68(9), 2591-2604. https://doi.org/10.1007/s11427-024-2828-8

Brulin, L., Sanchez, M.-P., Cai, Z., Ducrocq, S., Even, G., Martel, S., Merlin, S., Audebert, C., Estellé, J., Sahana, G. & Croiseau, P. (2025). Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows. Journal of Dairy Science, 108(8), 8666-8684. https://doi.org/10.3168/jds.2024-26203

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Short communication: Substantial heritability of larval size in the black soldier fly reveals potential for selective breeding. ANIMAL, 19(6), Artikel 101534. https://doi.org/10.1016/j.animal.2025.101534

Zaalberg, R. M., Buitenhuis, A. J., Jensen, J., Chu, T. T. & Villumsen, T. M. (2025). Short communication: Including genomic information increases accuracy of breeding value estimation in a small outdoor organic pig population. Animal, 19(3), Artikel 101434. https://doi.org/10.1016/j.animal.2025.101434

Bengtsson, C., Stålhammar, H., Thomasen, J. R., Fikse, W. F., Strandberg, E., Eriksson, S. & Johnsson, M. (2025). Simulation of long-term impact of dairy cattle mating programmes using genomic information at the herd level. ANIMAL, 19(5), Artikel 101498. https://doi.org/10.1016/j.animal.2025.101498

Tu, J. H., Liu, B. G., Lin, B. J., Liu, H. C., Guo, S. C., Ouyang, Q. Y., Fang, L. Z., He, X., Song, Z. H. & Zhang, H. H. (2025). Single-cell transcriptomic atlas of the chicken cecum reveals cellular responses and state shifts during Eimeria tenella infection. BMC Genomics, 26(1), Artikel 141. https://doi.org/10.1186/s12864-025-11302-9

Laursen, S. F., Hansen, L. S., Sørensen, J. G. & Kristensen, T. N. (2025). Skal vi leve af larver? Insekter som en bæredygtig kilde til føde. Aktuel Naturvidenskab, 2025(1). https://aktuelnaturvidenskab.dk/find-artikel/nyeste-numre/1-2025/skal-vi-leve-af-larver

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Strong potential for selection for larger larval size in the black soldier fly (Hermetia illucens). I Book of Abstracts of the 1 st EAAP Workshop on Insect Genetic Improvement, Implementation, Impact (s. 41-41). EAAP. https://docs.eaap.org/boa/2025_insectIMP_Book_Abstracts.pdf

Pei, Y., Zhao, X., Du, W., Diao, W., Zhang, W., Xiong, B., Ramstein, G. P., Ottosen, C. O., Cheng, C., Zhao, Q., Li, J., Lou, Q., Chen, J. & Yu, X. (2025). Synthetic allopolyploidy unveils hybridization-driven transcriptional reprogramming underlying thermal adaptation in Cucumis. Plant Journal, 124(1), Artikel e70507. https://doi.org/10.1111/tpj.70507

He, S., Song, B., Tang, Y., Qu, X., Li, X., Yang, X., Bao, Q., Fang, L., Jiang, J., Tang, Z. & Yi, G. (2025). Systematic benchmarking of tools for structural variation detection using short- and long-read sequencing data in pigs. iScience, 28(3), Artikel 111983. https://doi.org/10.1016/j.isci.2025.111983

McLain, A., Kowalczyk, A., Baran-Rachwalska, P., Sutera, F. M., Robertson, L. J., Nielsen, N. S., Enghild, J. J., Cobice, D., Bonelli, F., Barbaro, V., Ferrari, S., Patterson, B., Moore, L., Marshall, J., Nesbit, M. A. & Moore, T. (2025). TGFBI R124H mutant allele silencing in granular corneal dystrophy type 2 using topical siRNA delivery. Journal of Controlled Release, 382, Artikel 113681. https://doi.org/10.1016/j.jconrel.2025.113681

Ye, X., Sahana, G., Lund, M. S. & Cai, Z. (2025). The crosstalk between host and rumen microbiome in cattle: insights from multi-omics approaches and genome-wide association studies. World Journal of Microbiology and Biotechnology, 41(8), Artikel 267. https://doi.org/10.1007/s11274-025-04504-6

de Hollander, C. A., Chu, T. T., Marois, D., Felipe, V. B., Lopes, F. B. & Calus, M. P. L. (2025). The Effect of Preselection on the Level of Bias and Accuracy in a Broiler Breeder Population, a Simulation Study. Journal of Animal Breeding and Genetics, 142(4), 392-407. https://doi.org/10.1111/jbg.12908

FarmGTEx Consortium (2025). The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project. Nature Genetics, 57(4), 786-796. Artikel 604. https://doi.org/10.1038/s41588-025-02121-5

Zan, Y., Chen, S., Ren, M., Liu, G., Liu, Y., Han, Y., Dong, Y., Zhang, Y., Si, H., Liu, Z., Liu, D., Zhang, X., Tong, Y., Li, Y., Jiang, C., Wen, L., Xiao, Z., Sun, Y., Geng, R. ... Yang, A. (2025). The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation. Nature Genetics, 57(4), 986-996. Artikel 3833. https://doi.org/10.1038/s41588-025-02126-0

Muchina, P. K., Kinyua, J., Khamis, F., MBI Tanga, C., Gebreyesus, G., Cai, Z. & Sahana, G. (2025). The genomic landscape of Hermetia illucens: exploring the potential of the black soldier fly through molecular insights. Journal of Insects as Food and Feed, 11(12), 2049-2074. https://doi.org/10.1163/23524588-bja10200

Yang, Z., Liu, P., Ying, F., Liu, D., Wen, J., Zhao, G. & An, B. (2025). The heart and liver transcriptome responses to acute and chronic heat stress in broilers. Poultry Science, 104(11), Artikel 105632. https://doi.org/10.1016/j.psj.2025.105632

Conover, C. A. & Oxvig, C. (2025). The IGF System and Aging. Endocrine Reviews, 46(2), 214-223. https://doi.org/10.1210/endrev/bnae029

Costes, V., Lopez-Catalina, A., Raja Ravi Shankar , A., Chaulot-Talmon, A., Costa-Monteiro-Moreira , G., Cai, Z., Sahana, G., Boussaha, M., Fritz, S., Ibeagha-Awemu, E., Bissonette, N., Powell, J., Navarro, P., Clarke, S., Coulton , A., Foucras, G., Rico , D., Lefebvre, R., Takeda, K. ... Kiefer, H. (2025). The RUMIGEN Epichip: a versatile, medium density DNA methylation BeadChip for large population studies in cattle. 568. Abstract fra The 76th EAAP Annual Meeting, Innsbruck , Østrig. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Aalborg, T., Romé, H., Ranzau, C., Bagge, M., Jensen, J. & Nielsen, K. L. (2025). The transmission ability in a population of elite tetraploid potatoes. The Plant Genome, 18(3), Artikel e70066. https://doi.org/10.1002/tpg2.70066, https://doi.org/10.1002/tpg2.70066

Hansen, L. S., Laursen, S. F., Bahrndorff, S., Sørensen, J. G., Sahana, G., Kristensen, T. N. & Nielsen, H. M. (2025). The unpaved road towards efficient selective breeding in insects for food and feed: A review. Entomologia Experimentalis et Applicata, 173(6), 498-521. https://doi.org/10.1111/eea.13526

Malinowska, M., Kristensen, P. S., Nielsen, B., Fè, D., Ruud, A. K., Lenk, I., Greve, M. & Asp, T. (2025). The value of early root development traits in breeding programs for biomass yield in perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics, 138(1), 31. Artikel 31. https://doi.org/10.1007/s00122-024-04797-5

Blicher-Mathiesen, G., Larsen, S. E., Rasmussen, J. J., Thorsen, M., Seidenfaden, I. K., Troldborg, L., Ondracek, M., ten Damme, L., Neumann Andersen3, M., Kratschmer, A. K., Lissner, E. S., Tornbjerg, H. & Thodsen, H. (2025). Tørkes betydning for kvælstofudledning, vandføring og biologi i vandløb: Perspektiver for klimasikring og forvaltning af vores vandressourcer. Aarhus University, DCE - Danish Centre for Environment and Energy. Videnskabelig rapport fra DCE - Nationalt Center for Miljø og Energi Nr. 646 https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Videnskabelige_rapporter_600-699/SR646.pdf

Loft, A., Emont, M. P., Weinstock, A., Divoux, A., Ghosh, A., Wagner, A., Hertzel, A. V., Maniyadath, B., Deplancke, B., Liu, B., Scheele, C., Lumeng, C., Ding, C., Ma, C., Wolfrum, C., Strieder-Barboza, C., Li, C., Truong, D. D., Bernlohr, D. A. ... Rosen, E. D. (2025). Towards a consensus atlas of human and mouse adipose tissue at single-cell resolution. Nature Metabolism, 7(5), 875-894. https://doi.org/10.1038/s42255-025-01296-9

Ollivier, R., Robin, S., Galland, M., Shih, P. Y., Morlière, S., Paulmann, M. K., Gershenzon, J., Kunert, G., Pilet-Nayel, M. L., Simon, J. C. & Sugio, A. (2025). Transcriptomic analysis reveals candidate molecular pathways involved in pea (Pisum sativum L.) resistance to pea aphid (Acyrthosiphon pisum Harris) biotypes. BMC Genomics, 26(1), Artikel 580. https://doi.org/10.1186/s12864-025-11742-3

Gao, Y., Liu, G. E., Ma, L., Fang, L., Li, C. J. & Baldwin, R. L. (2025). Transcriptomic profiling of gastrointestinal tracts in dairy cattle during lactation reveals molecular adaptations for milk synthesis. Journal of Advanced Research. https://doi.org/10.1016/j.jare.2024.06.020

Worm, J., Jørgensen, I. F., Davídsson, Ó. B., Hjalgrim, H., Röder, T., Ostrowski, S. R., Pedersen, O. B., Erikstrup, C., Bruun, M. T., Jensen, B. A., Sørensen, E., Ullum, H., Björnsdóttir, G., Thorgeirsson, T., Stefánsson, H., Sveinsson, Ó. Á., Stefansson, K., Schytz, H. W., Bendtsen, L. ... Westergaard, D. (2025). Trigeminal neuralgia and its comorbidities: A nationwide disease trajectory study. Pain, 166(4), 879-887. https://doi.org/10.1097/j.pain.0000000000003428

Verweij, J. W., Buitenhuis, A. J., Chu, T. T. & Nielsen, H. M. (2025). TROUTGANIC: Establishment of an organic line of rainbow trout. 227. Poster-session præsenteret på XV International Symposium on Genetics in Aquaculture, Cadíz, Spanien.

Jové-Juncà, T., Crespo-Piazuelo, D., Hernández-Banqué, C., González-Rodríguez, O., Fang, L., Quintanilla, R. & Ballester, M. (2025). Unveiling regulatory variants in the blood transcriptome and their association with immunity traits in pigs. Frontiers in Immunology, 16, Artikel 1582982. https://doi.org/10.3389/fimmu.2025.1582982

Adamsen, A. P. S. (red.), Manevski, K. (red.), Lærke, P. E. (red.), Ugilt Larsen, S., Jørgensen, U., Olesen, J. E., Andersen, M. N., Bay, S. S., Hutchings, N., Hansen, E. M., Munkholm, L. J., Børgesen, C. D., Thomsen, I. K., Elsgaard, L., Petersen, S. O., Toda, M., Ntinyari, W., Sørensen, P., Rasmussen, C. ... Nielsen, H. M. (2025). Virkemidler til reduktion af klimagasser i landbruget 2025. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Lund, T. B., Christensen, T., Denver, S., Olsen, S. B., Nielsen, H. M., Kargo, M. & Sandøe, P. (2025). What Breeding Goal Should Organic Dairy Farmers Pursue? Results from a Willingness-To-Pay Study Among Consumers in Denmark, Germany, and Sweden. I Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Bind 39, s. 730)

Zaalberg, R. M., Nielsen, H. M., Noer, N. K., Schou, T. M., Jensen, K., Thormose, S., Kargo, M. & Slagboom, M. (2024). A bio-economic model for estimating economic values of important production traits in the black soldier fly (Hermetia illucens). Journal of Insects as Food and Feed, 10(8), 1411-1421. https://doi.org/10.1163/23524588-00001126

Zaalberg, R. M., Nielsen, H. M., Noer, N. K., Schou, T. M., Jensen, K., Thormose, S., Kargo, M. & Slagboom, M. (2024). A bio-economic model for estimating economic values of important production traits in the black soldier fly (Hermetia illucens). I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 633-633). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

The PigGTEx Consortium (2024). A compendium of genetic regulatory effects across pig tissues. Nature Genetics, 56(1), 112-123. https://doi.org/10.1038/s41588-023-01585-7

Løvendahl, P., Milkevych, V., Krogh Nielsen, R., Bjerring, M., Manzanilla-Pech, C., Johansen, K., Difford, G. F. & Villumsen, T. M. (2024). A data-driven approach to the processing of sniffer-based gas emissions data from dairy cattle. Computers and Electronics in Agriculture, 227(Part 1), Artikel 109559. https://doi.org/10.1016/j.compag.2024.109559

Kristensen, T. N., Laursen, S. F. & Hansen, L. S. (2024). Advances in sustainable food production through optimization of insect farming. EU Research, 40, 28-29. https://issuu.com/euresearcher/docs/optimization_of_insect_production_for_animal_feed_

Kongsted, H., Krogh, M. A., Poulsen, B. G. & Christensen, O. F. (2024). Afdækning af eksisterende viden vedrørende variation i sæsonbestemt sodødelighed og genetisk variation i sodødelighed. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Zhong, C., Li, X., Guan, D., Zhang, B., Wang, X., Qu, L., Zhou, H., Fang, L., Sun, C., Yang, N. & ChickenGTEx Consortium (2024). Age-dependent genetic architectures of chicken body weight explored by multidimensional GWAS and molQTL analyses. Journal of Genetics and Genomics, 51(12), 1423-1434. https://doi.org/10.1016/j.jgg.2024.09.003

Zhao, F., Xie, R., Fang, L., Xiang, R., Yuan, Z., Liu, Y. & Wang, L. (2024). Analysis of 206 whole-genome resequencing reveals selection signatures associated with breed-specific traits in Hu sheep. Evolutionary Applications, 17(6), Artikel e13697. https://doi.org/10.1111/eva.13697

Song, H., Chu, J., Li, W., Li, X., Fang, L., Han, J., Zhao, S. & Ma, Y. (2024). A Novel Approach Utilizing Domain Adversarial Neural Networks for the Detection and Classification of Selective Sweeps. Advanced Science, 11(14), Artikel 2304842. https://doi.org/10.1002/advs.202304842

Akol, R., Katumba, A., Mwikirize, C., Nakimbugwe, D., Ssemakula, F., Nawoya, S., Geoffrey, S. & Gebreyesus, G. (2024). Application of emerging technologies in insect monitoring and rearing. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Smith, A. G., Malinowska, M., Ruud, A. K., Janss, L., Krusell, L., Jensen, J. D. & Asp, T. (2024). Automated seminal root angle measurement with corrective annotation. AoB Plants, 16(5), Artikel plae046. https://doi.org/10.1093/aobpla/plae046

Sahana, G., (2024). Bidrag til OECD's undersøgelse om unikke koder ('unique identifiers') til genetisk modificerede dyr, Nr. 2024-0750791, 9 s., nov. 21, 2024. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Cheruiyot Bett , R., Gebreyesus, G., Maweu, A., Nkirote Kunyanga , C., Abigael, N., Philip, T., Geoffrey, S., MBI Tanga, C. & Sahana, G. (2024). Characterization of black soldier fly production systems and traits preferences in Kenya. 23. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Liu, H., Cui, T., Liu, H., Zhang, J., Luo, Q., Fei, S., Chen, K., Zhu, X., Zhu, C., Li, B., Fang, L., Zhao, J. & Ou, M. (2024). Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing. Scientific Data, 11(1), Artikel 1249. https://doi.org/10.1038/s41597-024-04075-5

Bouquet, A. E. R., Slagboom, M., Thomasen, J. R., Friggens, N. C., Kargo, M. & Puillet, L. (2024). Combined mechanistic and genetic modelling to benchmark body reserve traits as proxies of dairy cows’ lifetime efficiency in grass-based production systems. Animal, 18(1), Artikel 101035. https://doi.org/10.1016/j.animal.2023.101035

Jensen, I. T., Janss, L., Radutoiu, S. & Waagepetersen, R. (2024). Compositionally aware estimation of crosscorrelations for microbiome data. PLoS One, 19(6), Artikel e0305032. https://doi.org/10.1371/journal.pone.0305032

Nawoya, S., Ssemakula, F., Akol, R., Geissmann, Q., Karstoft, H., Bjerge, K., Mwikirize, C., Katumba, A. & Gebreyesus, G. (2024). Computer vision and deep learning in insects for food and feed production: A review. Computers and Electronics in Agriculture, 216, Artikel 108503. https://doi.org/10.1016/j.compag.2023.108503

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2024). Computer-vision based prediction of body traits and larval sex in black soldier fly. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Jensen, K., Thormose, S., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2024). Consecutive mating of black soldier fly males to produce full- and half-sibling offspring. Abstract fra EAAP Florence, Italy.

Nielsen, H. M. & Kargo, M. (2024). Conservation of Danish Landrace pigs 1970 using optimum contribution selection. Poster-session præsenteret på NordGen’s farm animal conference , Uppsala, Sverige.

Jensen, K., Thormose, S. F., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Hansen, L. S., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2024). Controlled and polygynous mating in the black soldier fly: advancing breeding programs through quantitative genetic designs. https://doi.org/10.1101/2024.09.09.611978

Chen, S., Liu, S., Shi, S., Yin, H., Tang, Y., Zhang, J., Li, W., Liu, G., Qu, K., Ding, X., Wang, Y., Liu, J., Zhang, S., Fang, L. & Yu, Y. (2024). Cross-Species Comparative DNA Methylation Reveals Novel Insights into Complex Trait Genetics among Cattle, Sheep, and Goats. Molecular Biology and Evolution, 41(2), Artikel msae003. https://doi.org/10.1093/molbev/msae003

Kristensen, P. S., Larsen, A. S., Deneken, G. & Nielsen, B. (2024). Cultivar mixtures in wheat. Poster-session præsenteret på QGG Breeding Network Day, Aarhus, Danmark.

Nielsen, H. M., Hansen, L. S., Gebreyesus, G., Sahana, G., Zaalberg, R. M., Kargo, M., Slagboom, M., Noer, N. K., Schou, T. M., Jensen, K., Sørensen, J. G., Laursen, S. F., Bahrndorff, S. & Kristensen, T. N. (2024). Danish initiatives in selective breeding in insects. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Hansen, L. S., Laursen, S. F., Bahrndorff, S., Kargo, M., Sørensen, J. G., Sahana, G., Nielsen, H. M. & Kristensen, T. N. (2024). Dataset: Estimation of genetic parameters for the implementation of selective breeding in commercial insect production. Datasæt, Dryad Digital Repository. https://doi.org/10.5061/dryad.kwh70rzc5

Rachah, A., Løvendahl, P., Reksen, O. & Kielland, C. (2024). Data visualization techniques for the identification of missing values in dairy farming. I Y. Belhamadia & M. Seaid (red.), PROCEEDINGS OF THE NINTH INTERNATIONAL CONFERENCE ON MODELING, SIMULATION AND APPLIED OPTIMIZATION (1 udg., Bind 3034). AIP Publishing LLC. https://doi.org/10.1063/5.0195158

Sahana, G. & Cai, Z. (2024). Decoding the Genetic Dialogue: Rumen Microbiome and Host Genome Interaction in Enteric Methane Emission. I Book of Abstracts of the 75 th Annual Meeting of the European Federation of Animal Science (s. 655-655). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Noer, N. K., Rohde, P. D., Sørensen, P., Bahrndorff, S. & Kristensen, T. N. (2024). Diurnal variation in genetic parameters for locomotor activity in Drosophila melanogaster assessed under natural thermal conditions. Journal of Evolutionary Biology, 37(3), 336-345. https://doi.org/10.1093/jeb/voae020

Nielsen, H. M., Thomassen, J. R., Østergaard, S., Sørensen, L. P. & Kargo, M. (2024). Economic values for organic dairy cattle production systems in Denmark. I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 177-177). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Mukherjee, A., Cai, Z. & Mukherjee, S. (2024). Editorial: Application of genomics in livestock populations under selection or conservation. Frontiers in Genetics, 15, Artikel 1363839. https://doi.org/10.3389/fgene.2024.1363839

Shewale, A., Mokhade, A., Lipare, A. & Bokde, N. D. (2024). Efficient Techniques for Residential Appliances Scheduling in Smart Homes for Energy Management Using Multiple Knapsack Problem. Arabian Journal for Science and Engineering, 49(3), 3793-3813. https://doi.org/10.1007/s13369-023-08178-w

Tilhou, N. W., Lee, D. K., Ramstein, G. P., Poudel, H. P., Edme, S. J. & Casler, M. D. (2024). Empirical comparison of genomic selection to phenotypic selection for biomass yield of switchgrass. Agronomy Journal, 116(5), 2318-2327. https://doi.org/10.1002/agj2.21639

Rovere, G., de Los Campos, G., Gebreyesus, G., Savegnago, R. P. & Buitenhuis, A. J. (2024). Energy balance of dairy cows predicted by mid-infra-red spectra data of milk using Bayesian approaches. Journal of Dairy Science, 107(3), 1561-1576. https://doi.org/10.3168/jds.2023-23772

Degalez, F., Charles, M., Foissac, S., Zhou, H., Guan, D., Fang, L., Klopp, C., Allain, C., Lagoutte, L., Lecerf, F., Acloque, H., Giuffra, E., Pitel, F. & Lagarrigue, S. (2024). Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues. Scientific Reports, 14(1), Artikel 6588. https://doi.org/10.1038/s41598-024-56705-y

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Jette Odgaard Villemoes