Gao, H., Koivula, M.
, Jensen, J., Strandén, I., Madsen, P., Pitkänen, T., Aamand, G. P. & Mäntysaari, E. A. (2018).
Short communication: Genomic prediction using different single-step methods in the Finnish red dairy cattle population.
Journal of Dairy Science,
101(11), 10082-10088.
https://doi.org/10.3168/jds.2018-14913
Gao, H., Madsen, P., Pösö, J., Aamand, G. P., Lidauer, M.
& Jensen, J. (2018).
Short communication: Multivariate outlier detection for routine Nordic dairy cattle genetic evaluation in the Nordic Holstein and Red population.
Journal of Dairy Science,
101(12), 11159-11164.
https://doi.org/10.3168/jds.2018-15123
Bertolini, F., Servin, B., Talenti, A., Rochat, E., Kim, E. S., Oget, C., Palhière, I., Crisà, A., Catillo, G., Steri, R., Amills, M., Colli, L., Marras, G., Milanesi, M., Nicolazzi, E., Rosen, B. D., Van Tassell, C. P.
, Guldbrandtsen, B., Sonstegard, T. S. ... The ADAPTMAP consortium (Vivi Hunnicke Nielsen; member) (2018).
Signatures of selection and environmental adaptation across the goat genome post-domestication.
Genetics Selection Evolution,
50, 57.
https://doi.org/10.1186/s12711-018-0421-y
Slagboom, M., Wallenbeck, A.
, Hjortø, L., Sørensen, A. C., Rydhmer, L.
, Thomasen, J. R. & Kargo, M. (2018).
Simulating consequences of choosing a breeding goal for organic dairy production.
Journal of Dairy Science,
101(12), 11086-11096.
https://doi.org/10.3168/jds.2017-14316
Cai, Z., Villumsen, T. M., Asp, T., Guldbrandtsen, B., Sahana, G. & Lund, M. S. (2018).
SNP markers associated with body size and pelt length in American mink (Neovison vison).
BMC Genetics,
19(1), Artikel 103.
https://doi.org/10.1186/s12863-018-0688-6
Nielsen, H.-M., Ask, B.
, Christensen, O. F., Janss, L., Heidaritabar, M. & Madsen, P. (2018).
Social genetic effects for growth in Landrace pigs with varying group sizes. I
Proceedings of the World Congress on Genetics Applied to Livestock Production, 11.212 http://www.wcgalp.org/system/files/proceedings/2018/social-genetic-effects-growth-landrace-pigs-varying-group-sizes.pdf
Nayee, N., Sahana, G., Gajjar, S., Sudhakar, A., Trivedi, K.
, Lund, M. S. & Guldbrandtsen, B. (2018).
Suitability of existing commercial single nucleotide polymorphism chips for genomic studies in Bos indicus cattle breeds and their Bos taurus crosses.
Journal of Animal Breeding and Genetics (Online),
135(6), 432-441.
https://doi.org/10.1111/jbg.12356
Ma, P., Huang, J., Gong, W.
, Li, X., Gao, H., Zhang, Q., Ding, X. & Wang, C. (2018).
The impact of genomic relatedness between populations on the genomic estimated breeding values.
Journal of Animal Science and Biotechnology,
9(1), Artikel 64.
https://doi.org/10.1186/s40104-018-0279-4
Sverrisdóttir, E., Sundmark, E. H. R., Johnsen, H. Ø.
, Kirk, H. G., Asp, T., Janss, L., Bryan, G.
& Nielsen, K. L. (2018).
The value of expanding the training population to improve genomic selection models in tetraploid potato.
Frontiers in Plant Science,
9, Artikel 1118.
https://doi.org/10.3389/fpls.2018.01118
Liu, A., Lund, M. S., Boichard, D., Fritz, S.
, Karaman, E., Wang, Y.
& Su, G. (2018).
Using additional single nucleotide polymorphisms selected from whole genome sequence data for genomic prediction in Danish Jersey. I
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 Artikel 586
http://www.wcgalp.org/system/files/proceedings/2018/using-additional-single-nucleotide-polymorphisms-selected-whole-genome-sequence-data-genomic.pdf
Olesen, J. E., Petersen, S. O., Lund, P., Jørgensen, U., Kristensen, T., Elsgaard, L., Sørensen, P. & Lassen, J. (2018).
Virkemidler til reduktion af klimagasser i landbruget. DCA - Nationalt Center for Fødevarer og Jordbrug,. DCA rapport Nr. 130
http://web.agrsci.dk/djfpublikation/index.asp?action=show&id=1273
Poulsen, N. A., Le, T. T. T., Gregersen, V. R., Stenholt Hansen, M., Christensen, B.
, Buitenhuis, A. J., Sørensen, E. S. & Larsen, L. B. (2017).
Absolute quantification of individual milk proteins with ingredient potential. Abstract fra 10th NIZO Dairy Conference , Papendal, Holland.
Poulsen, N. A., Le, T. T. T., Gregersen, V. R., Stenholt Hansen, M., Christensen, B.
, Buitenhuis, A. J., Sørensen, E. S. & Larsen, L. B. (2017).
Absolute quantification of individual milk proteins with ingredient potential. Poster session præsenteret på 10th NIZO Dairy Conference , Papendal, Holland.
Uddin, M. M., Guldbrandtsen, B., Iso-Touru, T., Vilkki, J., de Koning, D.-J., Boichard, D.
, Lund, M. S. & Sahana, G. (2017).
A population scale discovery of large deletions in Holstein, Jersey and Nordic Red Cattle genome. Poster session præsenteret på 36th International Society for Animal Genetics Conference, Dublin, Irland.
http://www.isag.us/Docs/Proceedings/ISAG2017_Proceedings.pdf?v3
Liu, T., Luo, C.
, Wang, J., Ma, J., Shu, D.
, Lund, M. S., Su, G. & Qu, H. (2017).
Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
P L o S One,
12(3), Artikel e0173620.
https://doi.org/10.1371/journal.pone.0173620
Wu, X., Guldbrandtsen, B., Nielsen, U. S.
, Lund, M. S. & Sahana, G. (2017).
Association analysis for young stock survival index with imputed whole-genome sequence variants in Nordic Holstein cattle.
Journal of Dairy Science,
100(8), 6356-6370.
https://doi.org/10.3168/jds.2017-12688
Villumsen, T. M., Su, G., Cai, Z., Guldbrandtsen, B., Asp, T., Sahana, G. & Lund, M. S. (2017).
Bayes AS and GBLUP models for genomic selection in mink. Poster session præsenteret på 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Danmark.
Wang, C.
, Li, X., Qian, R.
, Su, G., Zhang, Q. & Ding, X. (2017).
Bayesian methods for jointly estimating genomic breeding values of one continuous and one threshold trait.
P L o S One,
12(4), Artikel e0175448.
https://doi.org/10.1371/journal.pone.0175448
Hinrichs, D., Calus, M., De Koning, D.-J., Bennewitz, J., Meuwissen, T., Thaller, G., Szyda, J., Tetens, J., Juskiene, V.
& Guldbrandtsen, B. (2017).
Biodiversity within and between European Red dairy breeds - conversation though utilization. Abstract fra EAAP, Tallin, Estland.
Welderufael, B. G., Janss, L. L. G., de Koning, D. J.
, Sørensen, L. P., Løvendahl, P. & Fikse, W. F. (2017).
Bivariate threshold models for genetic evaluation of susceptibility to and ability to recover from mastitis in Danish Holstein cows.
Journal of Dairy Science,
100(6), 4706-4720.
https://doi.org/10.3168/jds.2016-11894
Zhu, Z., Noel, S. J., Difford, G. F., Al-Soud, W. A., Brejnrod, A., Sørensen, S. J.
, Lassen, J., Løvendahl, P. & Højberg, O. (2017).
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period.
P L o S One,
12(11), e0187858. Artikel e0187858.
https://doi.org/10.1371/journal.pone.0187858
Kjærup, R. B., Juul-Madsen, H. R., Norup, L. R., Sørensen, P. & Dalgaard, T. S. (2017).
Comparison of growth performance and immune parameters of three commercial chicken lines used in organic production.
Veterinary Immunology and Immunopathology,
187, 69-79.
https://doi.org/10.1016/j.vetimm.2017.04.007
Zhang, Q., Calus, M. P. L.
, Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2017).
Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle.
Genetics Selection Evolution,
49(1), Artikel 60.
https://doi.org/10.1186/s12711-017-0336-z
Larsen, M., Hellwing, A. L. F., Larsen, T., Løvendahl, P., Sehested, J. & Weisbjerg, M. R. (2017).
Creatinine in milk as biomarker for muscle protein mobilisation in postpartum cows. 407. Abstract fra 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estland.
Poulsen, N. A., Hein, L.
, Gregersen, S. B., Sørensen, L. P.
, Larsen, L. B., Kargo, M. & Buitenhuis, A. J. (2017).
Detailed milk fatty acid profiling of the Danish dairy cattle population. Abstract fra 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Poulsen, N. A., Hein, L.
, Gregersen, S. B., Sørensen, L. P.
, Larsen, L. B., Kargo, M. & Buitenhuis, A. J. (2017).
Detailed milk fatty acid profiling of the Danish dairy cattle population. Poster session præsenteret på 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Difford, G., de Haas, Y., Visker, M. H. P. W.
, Lassen, J., Bovenhuis, H., Veerkamp, R. F.
& Løvendahl, P. (2017).
Do breath gas measurements hold the key to unlocking the genetics of feed efficiency in dairy cows?. 184. Abstract fra 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estland.
Ettema, J. F., Thomasen, J. R., Hjortø, L.
, Kargo, M., Ostergaard, S. & Sorensen, A. C. (2017).
Economic opportunities for using sexed semen and semen of beef bulls in dairy herds.
Journal of Dairy Science,
100(5), 4161-4171.
https://doi.org/10.3168/jds.2016-11333
Clasen, J. B., Norberg, E., Madsen, P., Pedersen, J.
& Kargo, M. (2017).
Estimation of genetic parameters and heterosis for longevity in crossbred Danish dairy cattle.
Journal of Dairy Science,
100(8), 6337-6342.
https://doi.org/10.3168/jds.2017-12627
Geissmann, Q., Garcia Rodriguez, L., Beckwith, E. J., French, A. S., Jamasb, A. R. & Gilestro, G. F. (2017).
Ethoscopes: An open platform for high-throughput ethomics.
PLoS Biology,
15(10), Artikel e2003026.
https://doi.org/10.1371/journal.pbio.2003026
Fang, L., Sahana, G., Ma, P., Su, G., Yu, Y., Zhang, S.
, Lund, M. S. & Sørensen, P. (2017).
Exploring the genetic architecture and improving genomic prediction accuracy for mastitis and milk production traits in dairy cattle by mapping variants to hepatic transcriptomic regions responsive to intra-mammary infection.
Genetics Selection Evolution,
49, Artikel 44.
https://doi.org/10.1186/s12711-017-0319-0
Reyer, H.
, Shirali, M., Ponsuksili, S., Murani, E., Varley, P. F.
, Jensen, J. & Wimmers, K. (2017).
Exploring the genetics of feed efficiency and feeding behaviour traits in a pig line highly selected for performance characteristics.
Molecular Genetics and Genomics,
292(5), 1001-1011.
https://doi.org/10.1007/s00438-017-1325-1
Shetty, N.
, Difford, G., Lassen, J.
, Løvendahl, P. & Buitenhuis, A. J. (2017).
Feasibility of FT-IR-milk spectra to predict methane emissions in danish lactating dairy cows. 199. Abstract fra 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estland.
Villumsen, T. M., Cai, Z., Sahana, G., Guldbrandtsen, B., Asp, T. & Lund, M. S. (2017).
Gener i kortlagte genområder påvirker størrelse, kvalitet og reproduktion. I S. H. Møller & J. Malmkvist (red.),
Temadag om aktuel minkforskning (Bind 103, s. 32-40). DCA - Nationalt Center for Fødevarer og Jordbrug,.
http://pure.au.dk/portal/files/116891581/DCArapport103.pdf
Løvendahl, P., Lauritsen, U., Hansen, L. F., Persson, J.
& Sarup, P. M. (2017).
Genetic assessment of intra-individual animal variation in milking order of Jersey cows. Abstract fra 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estland.
Rovere, G., Ducro, B. J., van Arendonk, J. A. M.
, Norberg, E. & Madsen, P. (2017).
Genetic correlations between dressage, show jumping and studbook-entry inspection traits in a process of specialization in Dutch Warmblood horses.
Journal of Animal Breeding and Genetics,
134(2), 162-171.
https://doi.org/10.1111/jbg.12241
Poulsen, N. A., Buitenhuis, A. J., C. Robinson, R., Barile, D.
& Larsen, L. B. (2017).
Genetic parameter estimation for bovine milk oligosaccharides in Danish dairy breeds. Abstract fra 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Poulsen, N. A., Buitenhuis, A. J., C. Robinson, R., Barile, D.
& Larsen, L. B. (2017).
Genetic parameter estimation of bovine milk oligosaccharides in Danish dairy breeds. Abstract fra Conference on milk composistion, functional genomics and health aspects, Larkollen, Norge.
Liu, A., Wang, Y.
, Sahana, G., Zhang, Q., Liu, L.
, Lund, M. S. & Su, G. (2017).
Genome-wide Association Studies for Female Fertility Traits in Chinese and Nordic Holsteins.
Scientific Reports,
7(1), Artikel 8487.
https://doi.org/10.1038/s41598-017-09170-9
Rohde, P. D., Gartner, B., Ward, K.
, Sørensen, P. & F C Mackay, T. (2017).
Genomic Analysis of Genotype-by-Social Environment Interaction for Drosophila melanogaster Aggressive Behavior.
Genetics (Print),
206(4), 1969-1984.
https://doi.org/10.1534/genetics.117.200642
Gebreyesus, G., Lund, M. S., Janss, L., Bovenhuis, H.
, Poulsen, N. A. & Buitenhuis, A. J. (2017).
Genomic prediction for detailed milk protein composition traits. Poster session præsenteret på 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Danmark.
Ismael, A., Løvendahl, P., Fogh, A.
, Lund, M. S. & Su, G. (2017).
Improving genetic evaluation using a multitrait single-step genomic model for ability to resume cycling after calving, measured by activity tags in Holstein cows.
Journal of Dairy Science,
100(10), 8188-8196.
https://doi.org/10.3168/jds.2017-13122
Fang, L., Sahana, G., Su, G., Yu, Y., Zhang, S.
, Lund, M. S. & Sørensen, P. (2017).
Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle.
Scientific Reports,
7, Artikel 45560.
https://doi.org/10.1038/srep45560
Tesauro, C., Ferrando, B., Ma, X., Jepsen, M. L., Ivarsen, A. K., Frohlich, R., Stevnsner, T., Knudsen, B. R. & Ho, Y. P. (2017).
Isolation of functional mitochondria by inertial microfluidics - a new method to sort intracellular organelles from a small scale biological sample.
R S C Advances,
7(38), 23735-23741.
https://doi.org/10.1039/c7ra03384b
Shirali, M., Strathe, A. B., Mark, T.
, Nielsen, B. & Jensen, J. (2017).
Joint analysis of longitudinal feed intake and single recorded production traits in pigs using a novel Horizontal model.
Journal of Animal Science,
95(3), 1050-1062.
https://doi.org/10.2527/jas.2016.0606
Hjortø, L., Thomasen, J. R.
, Berg, P., Kargo, M., Henryon, M.
, Liu, H. & Sørensen, A. C. (2017).
Managing lethal alleles using genomic optimum contribution selection. Abstract fra EAAP, Tallin, Estland.
Garcia-Baccino, C. A., Legarra, A.
, Christensen, O. F., Misztal, I., Pocrnic, I., Vitezica, Z. G. & Cantet, R. J. C. (2017).
Metafounders are related to Fst fixation indices and reduce bias in single-step genomic evaluations.
Genetics Selection Evolution,
49(1), 1-14. Artikel 34.
https://doi.org/10.1186/s12711-017-0309-2
Szalanski, M., Kristensen, T., Difford, G., Løvendahl, P. & Lassen, J. (2017).
Methane emission in Jersey cows during spring transition from in-door feeding to grazing. I
Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (2017 udg., Bind 23, s. 148-148). Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-859-9
Wang, H.-M., Shi, L., Liang, T., Wang, B., Wu, W. J.
, Su, G., Wei, J., Li, P. & Huang, R. (2017).
MiR-696 regulates C2C12 cell proliferation and differentiation by targeting CNTFRα.
International Journal of Biological Sciences,
13(4), 413-425.
https://doi.org/10.7150/ijbs.17508
Gebreyesus, G., Lund, M. S., Buitenhuis, A. J., Bovenhuis, H.
, Poulsen, N. A. & Janss, L. (2017).
Modeling heterogeneous (co)variances from adjacent-SNP groups improves genomic prediction for milk protein composition traits.
Genetics Selection Evolution,
49(1), Artikel 89.
https://doi.org/10.1186/s12711-017-0364-8
Chen, M.
, Alimadadi, H., Molin, S.
, Zhang, L., Ta, N., Hendriksen, P. V., Kiebach, R.
& Du, Y. (2017).
Modeling of Ni diffusion induced austenite formation in ferritic stainless steel interconnects.
Journal of The Electrochemical Society,
164(9), F1005.
Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2017).
Multi-population GWAS for the de novo synthesis of milk fatty acids. Poster session præsenteret på 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Danmark.
Li, B., Berglund, B., Fikse, W. F.
, Lassen, J., Lidauer, M. H., Mäntysaari, P.
& Løvendahl, P. (2017).
Neglect of lactation stage leads to naive assessment of residual feed intake in dairy cattle.
Journal of Dairy Science,
100(11), 9076-9084.
https://doi.org/10.3168/jds.2017-12775
Poulsen, N. A., Gregersen, V. R., Maciel, G. D. M., Madsen, L. B., Buitenhuis, A. J., Stenholt Hansen, M.
, Bendixen, C. & Larsen, L. B. (2017).
Novel genetic variation associated to CSN3 strongly affects rennet-induced milk coagulation.
International Dairy Journal,
71, 122-130.
https://doi.org/10.1016/j.idairyj.2017.03.012
Cericola, F., Jahoor, A., Orabi, J., Andersen, J. R.
, Janss, L. L. & Jensen, J. (2017).
Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines.
P L o S One,
12(1), e0169606. Artikel e0169606.
https://doi.org/10.1371/journal.pone.0169606
Gregersen, V. R., Sørensen, E. S., S. Christiansen, B.
, Buitenhuis, A. J., Poulsen, N. A., Holm, L.-E., Stenholt Hansen, M.
, Larsen, L. B. & Thomsen, B. (2017).
Osteopontin and its relation to transcription of the major milk proteins. Abstract fra 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Gregersen, V. R., Sørensen, E. S., S. Christiansen, B.
, Buitenhuis, A. J., Poulsen, N. A., Holm, L.-E., Stenholt Hansen, M.
, Larsen, L. B. & Thomsen, B. (2017).
Osteopontin and its relation to transcription of the major milk proteins. Poster session præsenteret på 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Chen, M., Su, G., Fu, J.
, Zhang, Q., Wang, A.
, Sandø Lund, M. & Guldbrandtsen, B. (2017).
Population admixture in Chinese and European Sus scrofa.
Scientific Reports,
7(1), Artikel 13178.
https://doi.org/10.1038/s41598-017-13127-3
Chung, N. C., Szyda, J., Frąszczak, M., Fries, H. R.
, Lund, M. S., Guldbrandtsen, B., Boichard, D. A., Stothard, P., Veerkamp, R., Goddard, M., Van Tassell, C. P. & Hayes, B. (2017).
Population Structure Analysis of Bull Genomes of European and Western Ancestry.
Scientific Reports,
7, Artikel 40688.
https://doi.org/10.1038/srep40688
Shetty, N., Difford, G., Lassen, J., Løvendahl, P. & Buitenhuis, A. J. (2017).
Predicting methane emissions of lactating Danish Holstein cows using Fourier transform mid-infrared spectroscopy of milk.
Journal of Dairy Science,
100(11), 9052-9060.
https://doi.org/10.3168/jds.2017-13014
Poulsen, N. A., Rosengaard, A. K., Szekeres, B. D., Gregersen, V. R., Jensen, H. B. & Larsen, L. B. (2017).
Protein heterogeneity of bovine β-casein in Danish dairy breeds and association of rare β-casein F with milk coagulation properties.
Acta Agriculturae Scandinavica, Section A - Animal Science,
66(4), 190-198.
https://doi.org/10.1080/09064702.2017.1342858
Younesi, N., Shariati, M., Zerehdaran, S., Noghabi, M. J.
& Løvendahl, P. (2017).
Quantile regression mixed model at different milk production levels of Iranian Holsteins. Abstract fra EAAP, Tallin, Estland.
Esfandyari, H., Henryon, M., Berg, P., Thomasen, J. R., Bjima, P.
& Sørensen, A. C. (2017).
Response to selection in finite locus models with non-additive effects.
Journal of Heredity,
108(3), 318-327.
https://doi.org/10.1093/jhered/esw123
Salleh, S. M., Mazzoni, G.
, Höglund, J. K., Olijhoek, D. W., Lund, P., Løvendahl, P. & Kadarmideen, H. N. (2017).
RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle.
B M C Genomics,
18(1), Artikel 258.
https://doi.org/10.1186/s12864-017-3622-9
Clasen, J. B.
, Lehmann, J. O., Thomasen, J. R.
, Østergaard, S. & Kargo, M. (2017).
Sexed semen counteracts the increase in the genetic lag in dairy herds managed for extended lactation. I
Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (2017 udg., Bind 23, s. 255-255). Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-859-9
Slagboom, M., Wallenbeck, A.
, Hjortø, L., Sørensen, A. C., Thomasen, J. R.
& Kargo, M. (2017).
Simulating consequences of choosing a breeding goal for organic dairy cattle production. Abstract fra 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estland.