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Chu, T. T. & Jensen, J. (2025). ADAM-multi: software to simulate complex breeding programs for animals and plants with different ploidy levels and generalized genotypic effect models to account for multiple alleles. Frontiers in Genetics, 16, Artikel 1513615. https://doi.org/10.3389/fgene.2025.1513615

Yin, H., Zhao, Q., Yang, L., Yi, G., Yao, W., Fang, L. & Bai, L. (2025). A multi-tissue and -breed catalogue of chromatin conformations and their implications in gene regulation in pigs. BMC Genomics, 26(1), Artikel 484. https://doi.org/10.1186/s12864-025-11490-4

Thorsteinsson, M. M., Schönherz, A. A., Noel, S. J., Cai, Z., Niu, Z., Hellwing, A. L. F., Lund, P., Weisbjerg, M. R. & Nielsen, M. O. (2025). A preliminary study on the effects of red Bonnemaisonia hamifera seaweed on methane emissions from dairy cows. JDS Communications , 6(2), 217-222. https://doi.org/10.3168/jdsc.2024-0670

Hanini, A. & Beljadid, A. (2025). A semi-implicit method for modeling salinity and temperature in variable-density flow. Mathematics and Computers in Simulation, 238, 222-239. https://doi.org/10.1016/j.matcom.2025.04.032

Markant, A., Tabrizi, F., Grönvall, H., Speed, D. & Åhs, F. (2025). Association Between Polygenic Risk Scores and Treatment Response to Antidepressants, Benzodiazepines, and Antihistamines in Anxiety and Depression. Biological Psychiatry: Global Open Science, 5(3), Artikel 100470. https://doi.org/10.1016/j.bpsgos.2025.100470

Drachmann, F. F., Johansen, K., Kargo, M., Buitenhuis, A. J. & Therkildsen, M. (2025). Beef-on-dairy: current and potential meat quality of dairy-based beef production with culled Holstein cows and Danish Blue × Holstein crossbred calves. Acta Agriculturae Scandinavica A: Animal Sciences, 74(1), 72-82. https://doi.org/10.1080/09064702.2024.2403656, https://doi.org/10.1080/09064702.2024.2403656

Henry, J., Berrandou, T., Brewster, L. M. & Bouatia-Naji, N. (2025). Blood Pressure, Cardiometabolic Traits, and Cardiovascular Events in Women With Uterine Fibroids: A Genetic Correlation and Mendelian Randomization Study. Journal of the American Heart Association, 14(8), Artikel e036697. https://doi.org/10.1161/JAHA.124.036697

Cantet, R. J. C. & Jensen, J. (2025). Causal inference and GWAS: Rubin, Pearl, and Mendelian randomization. Journal of Animal Breeding and Genetics, 142(2), 200-213. https://doi.org/10.1111/jbg.12898, https://doi.org/Causal inference and GWAS: Rubin, Pearl, and Mendelian randomization

Hansen, L. S., Bouwman, A. C., Sahana, G., Slagboom, M., Nielsen, H. M. & Ellen, E. D. (2025). Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation. Animal, 19(4), Artikel 101475. https://doi.org/10.1016/j.animal.2025.101475

Zhou, H., Clark, E., Guan, D., Lagarrigue, S., Fang, L., Cheng, H., Tuggle, C. K., Kapoor, M., Wang, Y., Giuffra, E. & Egidy, G. (2025). Comparative Genomics and Epigenomics of Transcriptional Regulation. Annual Review of Animal Biosciences, 13(1), 73-98. https://doi.org/10.1146/annurev-animal-111523-102217

Adeniyi, O. O., Grochowska, E., Cai, Z. & Lühken, G. (2025). Comparative transcriptome analysis reveals genes associated with variation in liver copper concentration in Polish Merino sheep. Scientific Reports, 15(1), Artikel 19576. https://doi.org/10.1038/s41598-025-04330-8

Digel, L., Justesen, M. L., Madsen, N. S., Fransaert, N., Wouters, K., Bonné, R., Plum-Jensen, L. E., Marshall, I. P. G., Jensen, P. B., Nicolas-Asselineau, L., Drace, T., Bøggild, A., Hansen, J. L., Schramm, A., Bøjesen, E. D., Nielsen, L. P., Manca, J. V. & Boesen, T. (2025). Comparison of cable bacteria genera reveals details of their conduction machinery. EMBO Reports, 26(7), 1749-1767. Artikel 13699. https://doi.org/10.1038/s44319-025-00387-8

Si, J., Dai, D., Gorkhali, N. A., Wang, M., Wang, S., Sapkota, S., Kadel, R. C., Sadaula, A., Dhakal, A., Faruque, M. O., Omar, A. I., Sari, E. M., Ashari, H., Dagong, M. I. A., Yindee, M., Rushdi, H. E., Elregalaty, H., Amin, A., Radwan, M. A. ... Zhang, Y. (2025). Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis). Advanced Science, e2407615. https://doi.org/10.1002/advs.202407615, https://doi.org/10.1002/advs.202407615

Fang, L. (2025). Context-specific regulatory variants in precision medicine and agriculture. Nature Reviews. Genetics, 26(2), 81. https://doi.org/10.1038/s41576-024-00798-8

Jensen, K., Thormose, S., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Hansen, L. S., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2025). Controlled and polygynous mating in the black soldier fly: advancing breeding programs utilizing quantitative genetic designs. Journal of Insects as Food and Feed, Artikel 20142144. Advance online publication. https://doi.org/10.1163/23524588-bja10205

Skovbjerg, C. K., Sarup, P., Wahlström, E., Jensen, J. D., Orabi, J., Olesen, L., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Correction: Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program (Heredity, (2025), 134, 1, (33-48), 10.1038/s41437-024-00733-x). Heredity, 134(3), 248-249. https://doi.org/10.1038/s41437-025-00751-3

Chalabi, S., Loonen, L., Boekhorst, J., Li, H., Fang, L., Harrison, P. W., Lakhal, W., Lluch, J., Sokolov, A., Djebali, S., Rau, A., Giuffra, E. & Wells, J. (2025). Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets. Genomics, 117(2), Artikel 110995. https://doi.org/10.1016/j.ygeno.2025.110995

Balbuena, L., Åhs, F., Peters, E., Mendes-Silva, A. & Speed, D. (2025). Does the Path From Cigarette Smoking to Suicide Death Go Through the Hospital? A Causal Mediation Analysis in a National Canadian Sample. Tobacco Use Insights, 18. https://doi.org/10.1177/1179173X251349612

Holur, P., Enevoldsen, K. C., Rajesh, S., Mboning, L., Georgiou, T., Bouchard, L. S., Pellegrini, M. & Roychowdhury, V. (2025). Embed-Search-Align: DNA sequence alignment using Transformer models. Bioinformatics, 41(3), Artikel btaf041. https://doi.org/10.1093/bioinformatics/btaf041

Nersesjan, M., Hoffmann-Lücke, E., Greibe, E., Aaslo, P. H., Bak, L. K., Pedersen, L. E., Fruekilde, P. B. N., Stark, A., Christensen, J., Brønden, A. & Larsen, J. B. (Accepteret/In press). Evaluation of antiseizure medication concentration ranges in blood samples using an automated big data approach. Epilepsia. https://doi.org/10.1111/epi.18330

Ramírez-Díaz, J., Bobbo, T., Guldbrandtsen, B., Schönherz, A. A., Cozzi, P., Kusza, S., Sahana, G., Stella, A. & Manunza, A. (2025). Exploring the complex population structure and admixture of four local Hungarian sheep breeds. Frontiers in Genetics, 16, Artikel 1507315. https://doi.org/10.3389/fgene.2025.1507315

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Berg, J. A., Sævik, B. K., Trangerud, C., Madsen, P. & Lingaas, F. (2025). Genetic analyses of lumbosacral transitional vertebra and hip dysplasia in nine dog breeds in Norway. Acta Veterinaria Scandinavica, 67(1), Artikel 25. https://doi.org/10.1186/s13028-025-00810-z

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ChickenGTEx Consortium (2025). Genetic regulation of gene expression across multiple tissues in chickens. Nature Genetics, 57(5), 1298-1308. Artikel 1821. https://doi.org/10.1038/s41588-025-02155-9

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Li, X., Wang, Z., Zhu, M., Wang, B., Teng, S., Yan, J., Wang, H., Yuan, P., Cao, S., Qu, X., Wang, Z., Zhan, K., Choudhury, M. P., Yang, X., Bao, Q., He, S., Liu, L., Zhao, P., Jiang, J. ... Yi, G. (2025). Genomic Insights into Post-Domestication Expansion and Selection of Body Size in Ponies. Advanced Science, 12(16), Artikel 2413023. https://doi.org/10.1002/advs.202413023

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Tenhunen, S., Thomasen, J. R., Sørensen, L. P., Kargo, M., Berg, P. & Nielsen, H. M. (2025). Inbreeding affects the survival of Danish Jersey and Holstein dairy cows. Journal of Dairy Science, 108(6), 6203-6215. https://doi.org/10.3168/jds.2024-26125

Hosseinzadeh, S., Rafat, S. A. & Fang, L. (2025). Integrated TWAS, GWAS, and RNAseq results identify candidate genes associated with reproductive traits in cows. Scientific Reports, 15(1), 1932. Artikel 1932. https://doi.org/10.1038/s41598-024-82448-x

Xu, Z., Lin, Q., Cai, X., Zhong, Z., Teng, J., Li, B., Zeng, H., Gao, Y., Cai, Z., Wang, X., Shi, L., Wang, X., Wang, Y., Zhang, Z., Lin, Y., Liu, S., Yin, H., Bai, Z., Wei, C. ... Zhang, Z. (2025). Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs. National Science Review, 12(5), Artikel nwaf048. https://doi.org/10.1093/nsr/nwaf048, https://doi.org/10.1093/nsr/nwaf048

Wang, J., Kidmose, R. T., Boegholm, N., Zacharia, N. K., Thomsen, M. B., Christensen, A., Malik, T., Lechtreck, K. & Lorentzen, E. (2025). Integrative in silico and biochemical analyses demonstrate direct Arl3-mediated ODA16 release from the intraflagellar transport machinery. Journal of Biological Chemistry, 301(3), Artikel 108237. https://doi.org/10.1016/j.jbc.2025.108237

Li, P., Li, Z., Ying, F., Zhu, D., Liu, D., Song, X., Wen, J., Zhao, G. & An, B. (2025). Leveraging ultrasonic-derived phenotypes and estimated breeding value to improve abdominal fat weight prediction in chickens throughout the egg laying period. Smart Agricultural Technology, 11, Artikel 100912. https://doi.org/10.1016/j.atech.2025.100912

Gao, Y., Yang, L., Kuhn, K., Li, W., Zanton, G., Bowman, M., Zhao, P., Zhou, Y., Fang, L., Cole, J. B., Rosen, B. D., Ma, L., Li, C., Baldwin, R. L., Van Tassell, C. P., Zhang, Z., Smith, T. P. L. & Liu, G. E. (Accepteret/In press). Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle. Journal of Advanced Research. https://doi.org/10.1016/j.jare.2025.04.014

Zhang, Q., Cui, B., Dong, X., Lv, W., Xie, X., Wang, Y., Guo, Z. & Jensen, J. (2025). Mapping of identity by descent reveals genes shaping morphology and biological traits in the cultivated lettuce varieties during the long-term crossbreeding. Theoretical and Applied Genetics, 138(5), Artikel 99. https://doi.org/10.1007/s00122-025-04879-y

Chegini, A., Strandén, I., Karaman, E., Iso-Touru, T., Pösö, J., Aamand, G. P. & Lidauer, M. H. (2025). Marker weighting improves single-step genomic prediction reliabilities of udder health traits in Nordic Red and Jersey dairy cattle populations. Journal of Dairy Science, 108(1), 651-663. https://doi.org/10.3168/jds.2024-25374, https://doi.org/10.3168/jds.2024-25374

iPSYCH-MINERvA Group (2025). Maternal asthma and newborn DNA methylation. Clinical Epigenetics, 17(1), Artikel 79. https://doi.org/10.1186/s13148-025-01858-4

Guo, X., Sarup, P., Bay Nord, A., Henryon, M., Ostersen, T. & Christensen, O. F. (2025). Metabolomic-genomic prediction realizes small increases in accuracy of estimated breeding values for daily gain in pigs. Genetics Selection Evolution, 57(1), Artikel 24. https://doi.org/10.1186/s12711-025-00972-4

Stephansen, R. B., Lassen, J., Thorup, V. M., Poulsen, B. G., Jensen, J., Sahana, G. & Christensen, O. F. (2025). Modeling Feed Efficiency over Productive Lifetime and Integrating a Sub-Model for Body Reserve Management in Nordic Dairy Cattle. Journal of Dairy Science, 108(2), 1757-1777. https://doi.org/10.3168/jds.2024-25383, https://doi.org/10.3168/jds.2024-25383

Barboza Bispo, R., Teixeira do Amaral Junior, A., Santos, T. D. O., de Lima, V. J., Simão, B. R., Freitas, M. S. M., Kamphorst, S. H., Carvalho, C. M., Lamêgo, D. L., Nicácio Viana, F., Bernardo, W. D. P., Campostrini, E. & Bressan-Smith, R. (2025). Morphophysiological approach to heterosis in phosphorus use efficiency in popcorn. Cogent Food & Agriculture, 11(1), Artikel 2452347. https://doi.org/10.1080/23311932.2025.2452347

Skovbjerg, C. K., Sarup, P. M., Wahlström, E., Jensen, J. D., Orabi, J., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program. Heredity, 134(1), 33-48. Artikel 63. https://doi.org/10.1038/s41437-024-00733-x

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Chen, M. Y., Fulton, L. M., Huang, I., Liman, A., Hossain, S. S., Hamilton, C. D., Song, S., Geissmann, Q., King, K. C. & Haney, C. H. (2025). Order among chaos: High throughput MYCroplanters can distinguish interacting drivers of host infection in a highly stochastic system. PLOS Pathogens, 21(2 February), Artikel e1012894. Advance online publication. https://doi.org/10.1371/journal.ppat.1012894

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Prediction of black soldier fly larval sex and morphological traits using computer vision and deep learning. Smart Agricultural Technology, 11, Artikel 100953. https://doi.org/10.1016/j.atech.2025.100953

Martín-Rivada, Á., Martos-Moreno, G., Guerra-Cantera, S., Campillo-Calatayud, A., Oxvig, C., Frystyk, J., Chowen, J. A., Barrios, V. & Argente, J. (2025). Prepubertal Children With Obesity Have High Free IGF-1 Levels and Accelerated Growth Despite Reduced Pappalysin Levels. Journal of Clinical Endocrinology and Metabolism, 110(3), e622-e629. https://doi.org/10.1210/clinem/dgae288

Yousaf, M. F., Tomar, V., Romé, H., Bagge, M., Timmermann, M., Chu, T. T. & Jensen, J. (2025). Rate of double reduction and genetic variability in yield, quality, and senescence related traits in tetraploid potato (Solanum tuberosum L.). Frontiers in Plant Science, 16, Artikel 1560123. https://doi.org/10.3389/fpls.2025.1560123

Johansen, K. K., Kargo, M., Christensen, O. F., Bjerring, M., Løvendahl, P. & Buitenhuis, A. J. (2025). Repeatability and genetic parameters for phenotypes of methane emission in crossbred beef×dairy slaughter calves. Animal : an international journal of animal bioscience, 19(4), 101478. Artikel 101478. https://doi.org/10.1016/j.animal.2025.101478

Yu, X., Faggion, S., Liu, Y., Wang, B., Zeng, Q., Lu, C., Hu, J., Bargelloni, L., Fang, L. & Bao, Z. (2025). Role of multi-omics in aquaculture genetics and breeding: current status and future perspective. Science China Life Sciences. Advance online publication. https://doi.org/10.1007/s11427-024-2828-8

Brulin, L., Sanchez, M.-P., Cai, Z., Ducrocq, S., Even, G., Martel, S., Merlin, S., Audebert, C., Estellé, J., Sahana, G. & Croiseau, P. (2025). Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows. Journal of Dairy Science. Advance online publication. https://doi.org/10.3168/jds.2024-26203

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Short communication: Substantial heritability of larval size in the black soldier fly reveals potential for selective breeding. ANIMAL, 19(6), Artikel 101534. https://doi.org/10.1016/j.animal.2025.101534

Zaalberg, R. M., Buitenhuis, A. J., Jensen, J., Chu, T. T. & Villumsen, T. M. (2025). Short communication: Including genomic information increases accuracy of breeding value estimation in a small outdoor organic pig population. Animal, 19(3), Artikel 101434. https://doi.org/10.1016/j.animal.2025.101434

Bengtsson, C., Stålhammar, H., Thomasen, J. R., Fikse, W. F., Strandberg, E., Eriksson, S. & Johnsson, M. (2025). Simulation of long-term impact of dairy cattle mating programmes using genomic information at the herd level. ANIMAL, 19(5), Artikel 101498. https://doi.org/10.1016/j.animal.2025.101498

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He, S., Song, B., Tang, Y., Qu, X., Li, X., Yang, X., Bao, Q., Fang, L., Jiang, J., Tang, Z. & Yi, G. (2025). Systematic benchmarking of tools for structural variation detection using short- and long-read sequencing data in pigs. iScience, 28(3), Artikel 111983. https://doi.org/10.1016/j.isci.2025.111983

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FarmGTEx Consortium (2025). The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project. Nature Genetics, 57(4), 786-796. Artikel 604. https://doi.org/10.1038/s41588-025-02121-5

Zan, Y., Chen, S., Ren, M., Liu, G., Liu, Y., Han, Y., Dong, Y., Zhang, Y., Si, H., Liu, Z., Liu, D., Zhang, X., Tong, Y., Li, Y., Jiang, C., Wen, L., Xiao, Z., Sun, Y., Geng, R. ... Yang, A. (2025). The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation. Nature Genetics, 57(4), 986-996. Artikel 3833. https://doi.org/10.1038/s41588-025-02126-0

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