Center for Kvantitativ Genetik og Genomforskning

Aarhus Universitets segl

Publikationer

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2015

Bidrag til artikel

Li, X., Buitenhuis, A. J., Lund, M. S., Li, C., Sun, D., Zhang, Q., Poulsen, N. A. & Su, G. (2015). Joint genome-wide association study for milk fatty acid traits in Chinese and Danish Holstein populations. Journal of Dairy Science, 98(11), 8152-8163. https://doi.org/10.3168/jds.2015-9383
Legarra, A., Christensen, O. F., Vitezica, Z. G., Aguilar, I. & Misztal, I. (2015). Ancestral Relationships Using Metafounders: Finite Ancestral Populations and Across Population Relationships. Genetics (Print), 200(2), 455-468. https://doi.org/10.1534/genetics.115.177014
Kadri, N. K., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2015). Genetic dissection of milk yield traits and mastitis resistance QTL on chromosome 20 in dairy cattle. Journal of Dairy Science, 98(12), 9015-9025. https://doi.org/10.3168/jds.2015-9599
Gianola, D., de los Campos, G., Toro, M. A., Naya, H., Schön, C.-C. & Sorensen, D. (2015). Do Molecular Markers Inform About Pleiotropy? Genetics, 201(1), 23-29. https://doi.org/10.1534/genetics.115.179978
Edwards, D. (2015). Two molecular measures of relatedness based on haplotype sharing. BMC Bioinformatics, 16(383), 1-11. https://doi.org/10.1186/s12859-015-0802-y
Do, D. N., Janss, L., Jensen, J. & Kadarmideen, H. N. (2015). SNP annotation-based whole genomic prediction and selection: an application to feed efficiency and its component traits in pigs. Journal of Animal Science, 93(5), 2056-2063. https://doi.org/10.2527/jas.2014-8640
de los Campos, G., Sorensen, D. & Gianola, D. (2015). Genomic Heritability: What Is It? PLoS Genetics, 11(5), 1-21. https://doi.org/10.1371/journal.pgen.1005048
Castro Dias Cuyabano, B., Su, G., Rosa, G. J. M., Lund, M. S. & Gianola, D. (2015). Bootstrap study of genome-enabled prediction reliabilities using haplotype blocks across Nordic Red cattle breeds. Journal of Dairy Science, 98(10), 7351-63. https://doi.org/10.3168/jds.2015-9360
Brøndum, R. F., Su, G., Janss, L., Sahana, G., Guldbrandtsen, B., Boichard, D. A. & Lund, M. S. (2015). Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction. Journal of Dairy Science, 98(6), 4107-4116. https://doi.org/10.3168/jds.2014-9005

2014

Bidrag til konference

Zhang, Q., Guldbrandtsen, B., Bosse, M., Lund, M. S. & Sahana, G. (2014). Runs of homozygosity and distribution of functional variants in cattle genome. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/67ND0x1HWf
van den Berg, I., Guldbrandtsen, B., Hozé, C., Brøndum, R. F., Boichard, D. A. & Lund, M. S. (2014). Across Breed QTL Detection and Genomic Prediction in French and Danish Dairy Cattle Breeds. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/DtbvU7eMTN
Sørensen, P., Edwards, S. M. & Rohde, P. D. (2014). Genomic Feature Models. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://asas.org/docs/default-source/wcgalp-proceedings-oral/303_paper_10280_manuscript_1285_0.pdf
Sarup, P. M., Jensen, J., Edwards, S. M., Ostersen, T., Sørensen, P. & Henryon, M. A. (2014). Separating Signal from Noise Estimating SNP-effects and Decomposing Genetic Variation to the Level of QTLs in Pure Breed Duroc Pigs. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/8tN0Up65ZB
Sahana, G., Janss, L., Guldbrandtsen, B. & Lund, M. S. (2014). Genetic Architecture of Milk, Fat, Protein, Mastitis and Fertility Studied using NGS Data in Holstein Cattle. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/SPE1ZV6qCw
Rohde, P. D., Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Gene-based Association Approach Identify Genes Across Stress Traits in Fruit Flies. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://asas.org/docs/default-source/wcgalp-posters/673_paper_9223_manuscript_493_0.pdf
Morgante, F., Sorensen, D. A., Sørensen, P., Maltecca, C. & Mackay, T. F. C. (2014). Genetic Analysis of Micro-environmental Plasticity in Drosophila melanogaster. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/PabaGIO0N3
Lund, M. S. (2014). How to Improve Genomic Predictions in Small Populations. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/jSOg2jQvAY
Lopes, M. S., Bastiaansen, J. W. M., Janss, L., Bovenhuis, H. & Knol, E. F. (2014). Using SNP markers to estimate additive, dominance and imprinting genetic variance. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/l8lt5Q5qu9
Liu, H., Sørensen, A. C. & Berg, P. (2014). Optimum contribution selection combined with weighting rare favourable alleles increases long-term genetic gain. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/ppfvJcCuPy
Janss, L. (2014). Disentangling Pleiotropy along the Genome using Sparse Latent Variable Models. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/2NusKyePpB
Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Influence of Family Structure on Variance Decomposition. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://asas.org/docs/default-source/wcgalp-posters/691_paper_8972_manuscript_1723_0.pdf
Do, D. N., Janss, L. L. G., Strathe, A. B. & Kadarmideen, H. N. (2014). Genomic prediction and genomic variance partitioning of daily and residual feed intake in pigs using Bayesian Power Lasso models. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/cyOeeK9Wto
de los Campos, G., Sorensen, D. & Gianola, D. (2014). What is it?. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada.
Christensen, O. F., Madsen, P. & Nielsen, B. (2014). Genomic Evaluation of Both Purebred and Crossbred Performances. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/mXQraRHJs8
Brøndum, R. F., Su, G., Janss, L., Sahana, G. & Lund, M. S. (2014). Genomic prediction using QTL derived from whole genome sequence data. Afhandling præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/hDodVMMoTo
van den Berg, I., Guldbrandtsen, B., Hozé, C., Brøndum, R. F., Boichard, D. A. & Lund, M. S. (2014). Across Breed QTL Detection and Genomic Prediction in French and Danish Dairy Cattle Breeds. Poster-session præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/DtbvU7eMTN
Rohde, P. D., Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Gene-based Association Approach Identify Genes Across Stress Traits in Fruit Flies. Poster-session præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/ztj3NIVR9W
Morgante, F., Sorensen, D. A., Sørensen, P., Maltecca, C. & Mackay, T. F. C. (2014). Genetic Analysis of Micro-environmental Plasticity in Drosophila melanogaster. Poster-session præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/PabaGIO0N3
Li, X., Buitenhuis, A. J., Li, C., Sun, D., Zhang, Q., Lund, M. S. & Su, G. (2014). Genome-wide association of milk fatty acids in Chinese and Danish Holstein populations. Poster-session præsenteret på 65th Annual Meeting of the European Federation for Animal Science (EAAP). August 25-29 2014. Copenhagen, Denmark, Danmark.
Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Influence of Family Structure on Variance Decomposition. Poster-session præsenteret på 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/ajh1hqcoyE

2014

Bidrag til bog-antologi

Su, G., Christensen, O. F., Janss, L. & Lund, M. S. (2014). Genomic prediction using genomic relationship matrix weighted with SNP variances estimated from Bayesian mixture model. I Book of Abstracts of the 65th Annual Meeting of the European Federation of Animal Science (Bind 20, s. 217-217). Wageningen Academic Publishers. http://www.wageningenacademic.com/eaap2014
Ashraf, B., Fé, D., Jensen, J., Byrne, S., Asp, T., Greve-Pedersen, M., Lenk, I., Jensen, C. S. & Janss, L. (2014). Genomic Variance Estimation Based on Genotyping-by-Sequencing with Different Coverage in Perennial Ryegrass. I Proceeding of Plant & Animal Genome XXII: The International Conference on the Status of Plant & Animal Genome Research (s. 157-157).
Meier, K., Sørensen, A. C., Thirstrup, J. P. & Lund, M. S. (2014). Genomic selection in mink (Neovison vison) - A simulation study. I NJF Seminar no 482 - Annual Authumn Meeting in Fur Animal Research 2014 (s. 122-129). NJF, Nordic Association of Agricultural Scientists.
Fé, D., Ashraf, B., Byrne, S., Czaban, A., Roulund, N., Lenk, I., Asp, T., Pedersen, M. G., Jensen, C. S., Janss, L. & Jensen, J. (2014). Prospects for introducing genomic selection info forage grass breeding. I Proceedings of the 25th General Meeting of the European Grassland Federation (s. 830-832)

2014

Bidrag til artikel

Sørensen, P., Edwards, S. M., Sarup, P. M. & Sorensen, D. A. (2014). Sequence-based partitioning of genomic variance using prior biological information. EAAP Book of Abstracts, 20, 167-167. http://www.wageningenacademic.com/eaap2014
Sarup, P. M., Guldbrandtsen, B., Nielsen, B. N., Sørensen, P. & Jensen, J. (2014). Imputation from 60K SNP data to whole-genome level in Danish Landrace and Duroc pigs. EAAP Book of Abstracts, 169-169. http://www.wageningenacademic.com/eaap2014
Lund, M. S., Su, G., Janss, L., Guldbrandtsen, B. & Brøndum, R. F. (2014). Genomic evaluation of cattle in a multi-breed context. Livestock Science, 166, 101-110. https://doi.org/10.1016/j.livsci.2014.05.008
Henryon, M., Berg, P. & Sørensen, A. C. (2014). Animal-breeding schemes using genomic information need breeding plans designed to maximise long-term genetic gains. Livestock Science, 166, 38-47. https://doi.org/10.1016/j.livsci.2014.06.016
Su, G., Christensen, O. F., Janss, L. & Lund, M. S. (2014). Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances. Journal of Dairy Science, 97(10), 6547-6559. https://doi.org/10.3168/jds.2014-8210
Rohde, P. D. (2014). Psykofluer - bananfluer som model for psykiske  sygdomme. Aktuel Naturvidenskab, 5, 34-37.
Daetwyler, H. D., Capitan, A., Pausch, H., Stothard, P., van Binsbergen, R., Brøndum, R. F., Liao, X., Djari, A., Rodriguez, S. C., Grohs, C., Jung, S., Esquerré, D., Bouchez, O., Gollnick, N. S., Rossignol, M.-N., Klopp, C., Rocha, D., Fritz, S., Eggen, A. ... Hayes, B. J. (2014). Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics, 46(8), 858 - 865.
Christensen, O. F., Madsen, P., Nielsen, B. & Su, G. (2014). Genomic evaluation of both purebred and crossbred performances. Genetics Selection Evolution, 46(23), 1-16. https://doi.org/10.1186/1297-9686-46-23
Buitenhuis, B., Janss, L. L. G., Poulsen, N. A., Larsen, L. B., Larsen, M. K. & Sørensen, P. (2014). Genome-wide association and biological pathway analysis for milk-fat composition in Danish Holstein and Danish Jersey cattle. BMC Genomics, 15(1112), 1-11. https://doi.org/10.1186/1471-2164-15-1112
Brøndum, R. F., Guldbrandtsen, B., Sahana, G., Lund, M. S. & Su, G. (2014). Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle. BMC Genomics, 15(728), 1-8. https://doi.org/10.1186/1471-2164-15-728
Byrne, S., Czaban, A., Studer, B., Panitz, F., Bendixen, C. & Asp, T. (2013). Genome Wide Allele Frequency Fingerprints (GWAFFs) of populations via genotyping by sequencing. PLoS One, 8(3), Artikel e57438. https://doi.org/10.1371/journal.pone.0057438

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artikler af eksterne partnere

2018

Tidsskriftartikler

Morgante, F., Huang, W., Maltecca, C., Mackay. T.F.C. 2018. Effect of genetic architecture on the prediction accuracy of quantitative traits in samples of unrelated individuals. Heredity 120: 500-514

Konferencebidrag

van den Berg, I., Hayes, B.J., Goddard, M.E. 2018. Using expression data to detect small QTL in dairy cattle. Proceedings of the 11th WCGALP, Auckland, New Zealand 2018

2017

Tidsskriftartikler

van den Berg, I., Bowman, P.J., MacLeod, I.M., Hayes, B.J., Wang, T., Bolormaa, S., Goddard, M.E. 2017. Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effect. Genetic Selection Evolution 49:70.

Konferencebidrag

van den Berg, I., MacLeod, I.M., Bowman, P.J., Wang, T., Goddard, M.E. 2017. Strategies to use whole genome sequence data for genomic prediction in dairy cattle. 22nd AAABG conference, Townsville, Australia.

van den Berg, I., Meuwissen, T.H.E., Macleod, I.M., Goddard, M.E. 2017. Predicting the effect of reference population on the accuracy of across and multi breed genomic prediction. 5th Annual GenSAP Meeting, Billund, Denmark. 15 – 16 November.

van den Berg, I., Hayes, B.J., Goddard, M.E. 2017. Using expression data to detect small QTL in dairy cattle. 5th Annual GenSAP Meeting, Billund, Denmark. 15 – 16 November.

Revideret 19.03.2025
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Jette Odgaard Villemoes