Publications

Peer-reviewed publications at QGG

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Sendrowski, J., Bataillon, T. & Ramstein, G. P. (2025). In silico prediction of variant effects: promises and limitations for precision plant breeding. Theoretical and Applied Genetics, 138(8), Article 193. https://doi.org/10.1007/s00122-025-04973-1

Li, P., Li, Z., Ying, F., Zhu, D., Liu, D., Song, X., Wen, J., Zhao, G. & An, B. (2025). Leveraging ultrasonic-derived phenotypes and estimated breeding value to improve abdominal fat weight prediction in chickens throughout the egg laying period. Smart Agricultural Technology, 11, Article 100912. https://doi.org/10.1016/j.atech.2025.100912

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Prediction of black soldier fly larval sex and morphological traits using computer vision and deep learning. Smart Agricultural Technology, 11, Article 100953. https://doi.org/10.1016/j.atech.2025.100953

Brulin, L., Sanchez, M.-P., Cai, Z., Ducrocq, S., Even, G., Martel, S., Merlin, S., Audebert, C., Estellé, J., Sahana, G. & Croiseau, P. (2025). Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows. Journal of Dairy Science, 108(8), 8666-8684. https://doi.org/10.3168/jds.2024-26203

Ye, X., Sahana, G., Lund, M. S. & Cai, Z. (2025). The crosstalk between host and rumen microbiome in cattle: insights from multi-omics approaches and genome-wide association studies. World Journal of Microbiology and Biotechnology, 41(8), Article 267. https://doi.org/10.1007/s11274-025-04504-6

CattleGTEx Consortium (2025). Genetic score omics regression and multitrait meta-analysis detect widespread cis-regulatory effects shaping bovine complex traits. PNAS Nexus, 4(7), Article pgaf208. https://doi.org/10.1093/pnasnexus/pgaf208

Zhao, Q., Liu, H., Zhang, Q., Qadri, Q. R., Pan, Y., Su, G., Li, P. & Huang, R. (2025). Optimal Combination of Different Selection and Mating Strategies on Exploiting Genetic Diversity and Genetic Gain in Small Pig Conservation Populations. Journal of Animal Breeding and Genetics, 142(4), 444-453. https://doi.org/10.1111/jbg.12917

de Hollander, C. A., Chu, T. T., Marois, D., Felipe, V. B., Lopes, F. B. & Calus, M. P. L. (2025). The Effect of Preselection on the Level of Bias and Accuracy in a Broiler Breeder Population, a Simulation Study. Journal of Animal Breeding and Genetics, 142(4), 392-407. https://doi.org/10.1111/jbg.12908

Stephansen, R. B., van Breukelen, A. E., Almasi, F., González-Recio, O., Teran, E., Milkevych, V., Miglior, F., Baes, C. F., Bakke, K. A., Benzoni, L., Finocchiaro, R., Frizzarin, M., Krattenmacher, N., Lassen, J., Pryce, J. E., Richardson, C. & Gredler-Grandl, B. (2025). Are methane sniffer phenotypes useful for genetic ranking of dairy cattle? In Book of Abstracts - ADSA 2025 Annual Meeting (pp. 143-144). Article 1513 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Schneider, H. H., Lajevardi, R. K., Bjerring, M., Løvendahl, P., Lund, M. S., Villumsen, T. M. & Stephansen, R. B. (2025). Genetic parameters for enteric methane traits and their relationship with milk production in Danish Holstein and Danish Jersey Cattle. In Abstracts of the 2025 American Dairy Science Association® Annual Meeting (pp. 165-166). Article 1564 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Lassen, J., Stephansen, R. B., Kupisiewicz, K. & Bengtson, C. (2025). Large-scale measured body weight changes effect on yield, health, reproduction, and feed efficiency in 3 different dairy cattle breeds. In Abstracts of the 2025 American Dairy Science Association® Annual Meeting (pp. 160-160). Article 1550 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Hendriksen, N. B., Madsen, C. K. & Sahana, G., (2025). DCA response to EFSA public consultation PC-1460 regarding scientific and technical assistance for a regular horizon scanning to assess new scientific data on plants, animals, microorganisms and products thereof obtained by new genomic techniques., No. 2025-0833795, 38 p., Jun 13, 2025. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Kristensen, P. S., Chu, T. T., Sarup, P., Orabi, J., Mohlfeld, M., Jahoor, A. & Jensen, J. (2025). Optimizing hybrid rye breeding programs using simulations. 26. Abstract from International Symposium on Rye Breeding and Genetics, Tartu, Estonia. https://www.ryest2025.ee/userfiles/ryest2025/RYEST_abstract_book_2025_2.pdf

Adeniyi, O. O., Grochowska, E., Cai, Z. & Lühken, G. (2025). Comparative transcriptome analysis reveals genes associated with variation in liver copper concentration in Polish Merino sheep. Scientific Reports, 15(1), Article 19576. https://doi.org/10.1038/s41598-025-04330-8

Zhu, D., Wang, Y., Qu, H., Feng, C., Zhang, H., Sheng, Z., Jiang, Y., Nie, Q., Chu, S., Shu, D., Jiang, Z., Zhang, D., Fang, L., Li, H., Xu, Z., Zhao, Y., Wang, Y. & Hu, X. (2025). GCRP: Integrated Global Chicken Reference Panel from 11,951 Chicken Genomes. Genomics, Proteomics and Bioinformatics, 23(3), Article qzaf032. https://doi.org/10.1093/gpbjnl/qzaf032

Laursen, S. F., Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Sahana, G., Sørensen, J. G., Ørsted, M. & Kristensen, T. N. (2025). Genotype-by-environment interactions for mean performance and trait variation in house fly larvae reared on two diets. Entomologia Experimentalis et Applicata, 173(6), 575-589. https://doi.org/10.1111/eea.13530

Tenhunen, S., Thomasen, J. R., Sørensen, L. P., Kargo, M., Berg, P. & Nielsen, H. M. (2025). Inbreeding affects the survival of Danish Jersey and Holstein dairy cows. Journal of Dairy Science, 108(6), 6203-6215. https://doi.org/10.3168/jds.2024-26125

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Short communication: Substantial heritability of larval size in the black soldier fly reveals potential for selective breeding. ANIMAL, 19(6), Article 101534. https://doi.org/10.1016/j.animal.2025.101534

McLain, A., Kowalczyk, A., Baran-Rachwalska, P., Sutera, F. M., Robertson, L. J., Nielsen, N. S., Enghild, J. J., Cobice, D., Bonelli, F., Barbaro, V., Ferrari, S., Patterson, B., Moore, L., Marshall, J., Nesbit, M. A. & Moore, T. (2025). TGFBI R124H mutant allele silencing in granular corneal dystrophy type 2 using topical siRNA delivery. Journal of Controlled Release, 382, Article 113681. https://doi.org/10.1016/j.jconrel.2025.113681

Hansen, L. S., Laursen, S. F., Bahrndorff, S., Sørensen, J. G., Sahana, G., Kristensen, T. N. & Nielsen, H. M. (2025). The unpaved road towards efficient selective breeding in insects for food and feed: A review. Entomologia Experimentalis et Applicata, 173(6), 498-521. https://doi.org/10.1111/eea.13526

Xu, Z., Lin, Q., Cai, X., Zhong, Z., Teng, J., Li, B., Zeng, H., Gao, Y., Cai, Z., Wang, X., Shi, L., Wang, X., Wang, Y., Zhang, Z., Lin, Y., Liu, S., Yin, H., Bai, Z., Wei, C. ... Zhang, Z. (2025). Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs. National Science Review, 12(5), Article nwaf048. https://doi.org/10.1093/nsr/nwaf048

Loft, A., Emont, M. P., Weinstock, A., Divoux, A., Ghosh, A., Wagner, A., Hertzel, A. V., Maniyadath, B., Deplancke, B., Liu, B., Scheele, C., Lumeng, C., Ding, C., Ma, C., Wolfrum, C., Strieder-Barboza, C., Li, C., Truong, D. D., Bernlohr, D. A. ... Rosen, E. D. (2025). Towards a consensus atlas of human and mouse adipose tissue at single-cell resolution. Nature Metabolism, 7(5), 875-894. https://doi.org/10.1038/s42255-025-01296-9

Markant, A., Tabrizi, F., Grönvall, H., Speed, D. & Åhs, F. (2025). Association Between Polygenic Risk Scores and Treatment Response to Antidepressants, Benzodiazepines, and Antihistamines in Anxiety and Depression. Biological Psychiatry: Global Open Science, 5(3), Article 100470. https://doi.org/10.1016/j.bpsgos.2025.100470

ChickenGTEx Consortium (2025). Genetic regulation of gene expression across multiple tissues in chickens. Nature Genetics, 57(5), 1298-1308. Article 1821. https://doi.org/10.1038/s41588-025-02155-9

Epi25 Collaborative (2025). Genome-wide association meta-analyses of drug-resistant epilepsy. EBioMedicine, 115, 105675. Article 105675. https://doi.org/10.1016/j.ebiom.2025.105675

Zhang, Q., Cui, B., Dong, X., Lv, W., Xie, X., Wang, Y., Guo, Z. & Jensen, J. (2025). Mapping of identity by descent reveals genes shaping morphology and biological traits in the cultivated lettuce varieties during the long-term crossbreeding. Theoretical and Applied Genetics, 138(5), Article 99. https://doi.org/10.1007/s00122-025-04879-y

Bengtsson, C., Stålhammar, H., Thomasen, J. R., Fikse, W. F., Strandberg, E., Eriksson, S. & Johnsson, M. (2025). Simulation of long-term impact of dairy cattle mating programmes using genomic information at the herd level. ANIMAL, 19(5), Article 101498. https://doi.org/10.1016/j.animal.2025.101498

Gao, Y., Liu, G. E., Ma, L., Fang, L., Li, C. J. & Baldwin, R. L. (2025). Transcriptomic profiling of gastrointestinal tracts in dairy cattle during lactation reveals molecular adaptations for milk synthesis. Journal of Advanced Research. https://doi.org/10.1016/j.jare.2024.06.020

Li, X., Wang, Z., Zhu, M., Wang, B., Teng, S., Yan, J., Wang, H., Yuan, P., Cao, S., Qu, X., Wang, Z., Zhan, K., Choudhury, M. P., Yang, X., Bao, Q., He, S., Liu, L., Zhao, P., Jiang, J. ... Yi, G. (2025). Genomic Insights into Post-Domestication Expansion and Selection of Body Size in Ponies. Advanced Science, 12(16), Article 2413023. https://doi.org/10.1002/advs.202413023

Henry, J., Berrandou, T., Brewster, L. M. & Bouatia-Naji, N. (2025). Blood Pressure, Cardiometabolic Traits, and Cardiovascular Events in Women With Uterine Fibroids: A Genetic Correlation and Mendelian Randomization Study. Journal of the American Heart Association, 14(8), Article e036697. https://doi.org/10.1161/JAHA.124.036697

Digel, L., Justesen, M. L., Madsen, N. S., Fransaert, N., Wouters, K., Bonné, R., Plum-Jensen, L. E., Marshall, I. P. G., Jensen, P. B., Nicolas-Asselineau, L., Drace, T., Bøggild, A., Hansen, J. L., Schramm, A., Bøjesen, E. D., Nielsen, L. P., Manca, J. V. & Boesen, T. (2025). Comparison of cable bacteria genera reveals details of their conduction machinery. EMBO Reports, 26(7), 1749-1767. Article 13699. https://doi.org/10.1038/s44319-025-00387-8

Hansen, L. S., Bouwman, A. C., Sahana, G., Slagboom, M., Nielsen, H. M. & Ellen, E. D. (2025). Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation. Animal, 19(4), Article 101475. https://doi.org/10.1016/j.animal.2025.101475

Skovbjerg, C. K., Sarup, P., Wahlström, E., Jensen, J. D., Orabi, J., Olesen, L., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Correction: Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program (Heredity, (2025), 134, 1, (33-48), 10.1038/s41437-024-00733-x). Heredity, 134(3), 248-249. https://doi.org/10.1038/s41437-025-00751-3

Zhou, J., Xu, L., Liu, Q., Ma, J., He, J., Casey, D. S., Zhong, L., Su, G., Huang, R., Li, P. & Zhao, Q. (2025). Genetic parameters of vulva traits and impact of vulva scores on gilts culling in Large White pigs. ANIMAL, 19(4), Article 101472. https://doi.org/10.1016/j.animal.2025.101472

Henry, A., Mo, X., Finan, C., Chaffin, M. D., Speed, D., Issa, H., Denaxas, S., Ware, J. S., Zheng, S. L., Malarstig, A., Gratton, J., Bond, I., Roselli, C., Miller, D., Chopade, S., Schmidt, A. F., Abner, E., Adams, L., Andersson, C. ... Ghouse, J. (2025). Genome-wide association study meta-analysis provides insights into the etiology of heart failure and its subtypes. Nature Genetics, 57(4), 815-828. Article 163. https://doi.org/10.1038/s41588-024-02064-3

Yousaf, M. F., Tomar, V., Romé, H., Bagge, M., Timmermann, M., Chu, T. T. & Jensen, J. (2025). Rate of double reduction and genetic variability in yield, quality, and senescence related traits in tetraploid potato (Solanum tuberosum L.). Frontiers in Plant Science, 16, Article 1560123. https://doi.org/10.3389/fpls.2025.1560123

Johansen, K. K., Kargo, M., Christensen, O. F., Bjerring, M., Løvendahl, P. & Buitenhuis, A. J. (2025). Repeatability and genetic parameters for phenotypes of methane emission in crossbred beef×dairy slaughter calves. Animal : an international journal of animal bioscience, 19(4), 101478. Article 101478. https://doi.org/10.1016/j.animal.2025.101478

FarmGTEx Consortium (2025). The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project. Nature Genetics, 57(4), 786-796. Article 604. https://doi.org/10.1038/s41588-025-02121-5

Zan, Y., Chen, S., Ren, M., Liu, G., Liu, Y., Han, Y., Dong, Y., Zhang, Y., Si, H., Liu, Z., Liu, D., Zhang, X., Tong, Y., Li, Y., Jiang, C., Wen, L., Xiao, Z., Sun, Y., Geng, R. ... Yang, A. (2025). The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation. Nature Genetics, 57(4), 986-996. Article 3833. https://doi.org/10.1038/s41588-025-02126-0

Conover, C. A. & Oxvig, C. (2025). The IGF System and Aging. Endocrine Reviews, 46(2), 214-223. https://doi.org/10.1210/endrev/bnae029

Worm, J., Jørgensen, I. F., Davídsson, Ó. B., Hjalgrim, H., Röder, T., Ostrowski, S. R., Pedersen, O. B., Erikstrup, C., Bruun, M. T., Jensen, B. A., Sørensen, E., Ullum, H., Björnsdóttir, G., Thorgeirsson, T., Stefánsson, H., Sveinsson, Ó. Á., Stefansson, K., Schytz, H. W., Bendtsen, L. ... Westergaard, D. (2025). Trigeminal neuralgia and its comorbidities: A nationwide disease trajectory study. Pain, 166(4), 879-887. https://doi.org/10.1097/j.pain.0000000000003428

Ramírez-Díaz, J., Bobbo, T., Guldbrandtsen, B., Schönherz, A. A., Cozzi, P., Kusza, S., Sahana, G., Stella, A. & Manunza, A. (2025). Exploring the complex population structure and admixture of four local Hungarian sheep breeds. Frontiers in Genetics, 16, Article 1507315. https://doi.org/10.3389/fgene.2025.1507315

Holur, P., Enevoldsen, K. C., Rajesh, S., Mboning, L., Georgiou, T., Bouchard, L. S., Pellegrini, M. & Roychowdhury, V. (2025). Embed-Search-Align: DNA sequence alignment using Transformer models. Bioinformatics, 41(3), Article btaf041. https://doi.org/10.1093/bioinformatics/btaf041

Thorsteinsson, M. M., Schönherz, A. A., Noel, S. J., Cai, Z., Niu, Z., Hellwing, A. L. F., Lund, P., Weisbjerg, M. R. & Nielsen, M. O. (2025). A preliminary study on the effects of red Bonnemaisonia hamifera seaweed on methane emissions from dairy cows. JDS Communications , 6(2), 217-222. https://doi.org/10.3168/jdsc.2024-0670

Cantet, R. J. C. & Jensen, J. (2025). Causal inference and GWAS: Rubin, Pearl, and Mendelian randomization. Journal of Animal Breeding and Genetics, 142(2), 200-213. https://doi.org/10.1111/jbg.12898

Chalabi, S., Loonen, L., Boekhorst, J., Li, H., Fang, L., Harrison, P. W., Lakhal, W., Lluch, J., Sokolov, A., Djebali, S., Rau, A., Giuffra, E. & Wells, J. (2025). Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets. Genomics, 117(2), Article 110995. https://doi.org/10.1016/j.ygeno.2025.110995

Zaalberg, R. M., Buitenhuis, A. J., Jensen, J., Chu, T. T. & Villumsen, T. M. (2025). Short communication: Including genomic information increases accuracy of breeding value estimation in a small outdoor organic pig population. Animal, 19(3), Article 101434. https://doi.org/10.1016/j.animal.2025.101434

He, S., Song, B., Tang, Y., Qu, X., Li, X., Yang, X., Bao, Q., Fang, L., Jiang, J., Tang, Z. & Yi, G. (2025). Systematic benchmarking of tools for structural variation detection using short- and long-read sequencing data in pigs. iScience, 28(3), Article 111983. https://doi.org/10.1016/j.isci.2025.111983

Zhou, H., Clark, E., Guan, D., Lagarrigue, S., Fang, L., Cheng, H., Tuggle, C. K., Kapoor, M., Wang, Y., Giuffra, E. & Egidy, G. (2025). Comparative Genomics and Epigenomics of Transcriptional Regulation. Annual Review of Animal Biosciences, 13(1), 73-98. https://doi.org/10.1146/annurev-animal-111523-102217

Chu, T. T. & Jensen, J. (2025). ADAM-multi: software to simulate complex breeding programs for animals and plants with different ploidy levels and generalized genotypic effect models to account for multiple alleles. Frontiers in Genetics, 16, Article 1513615. https://doi.org/10.3389/fgene.2025.1513615

The FarmGTEx Consortium (2025). FarmGTEx TWAS-server: An Interactive Web Server for Customized TWAS Analysis. Genomics, Proteomics and Bioinformatics, 23(1), Article qzaf006. https://doi.org/10.1093/gpbjnl/qzaf006

Liu, H., Zhang, J., Cui, T., Zhang, X., Li, K., Wang, F., Luo, Q., Fei, S., Chen, B., Zhu, C., Chen, K., Zhu, X., Li, B., Zhao, J., Fang, L. & Ou, M. (2025). A chromosome-level genome assembly of the male darkbarbel catfish (Pelteobagrus vachelli) using PacBio HiFi and Hi-C data. Scientific Data, 12(1), Article 351. https://doi.org/10.1038/s41597-025-04662-0

Fang, L. (2025). Context-specific regulatory variants in precision medicine and agriculture. Nature Reviews. Genetics, 26(2), 81. https://doi.org/10.1038/s41576-024-00798-8

Stephansen, R. B., Lassen, J., Thorup, V. M., Poulsen, B. G., Jensen, J., Sahana, G. & Christensen, O. F. (2025). Modeling Feed Efficiency over Productive Lifetime and Integrating a Sub-Model for Body Reserve Management in Nordic Dairy Cattle. Journal of Dairy Science, 108(2), 1757-1777. https://doi.org/10.3168/jds.2024-25383, https://doi.org/10.3168/jds.2024-25383

Chen, M. Y., Fulton, L. M., Huang, I., Liman, A., Hossain, S. S., Hamilton, C. D., Song, S., Geissmann, Q., King, K. C. & Haney, C. H. (2025). Order among chaos: High throughput MYCroplanters can distinguish interacting drivers of host infection in a highly stochastic system. PLoS Pathogens, 21(2 February), Article e1012894. Advance online publication. https://doi.org/10.1371/journal.ppat.1012894

Laursen, S. F., Hansen, L. S., Sørensen, J. G. & Kristensen, T. N. (2025). Skal vi leve af larver? Insekter som en bæredygtig kilde til føde. Aktuel Naturvidenskab, 2025(1). https://aktuelnaturvidenskab.dk/find-artikel/nyeste-numre/1-2025/skal-vi-leve-af-larver

Si, J., Dai, D., Gorkhali, N. A., Wang, M., Wang, S., Sapkota, S., Kadel, R. C., Sadaula, A., Dhakal, A., Faruque, M. O., Omar, A. I., Sari, E. M., Ashari, H., Dagong, M. I. A., Yindee, M., Rushdi, H. E., Elregalaty, H., Amin, A., Radwan, M. A. ... Zhang, Y. (2025). Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis). Advanced Science, 12(4), e2407615. Article 2407615. https://doi.org/10.1002/advs.202407615

Malinowska, M., Kristensen, P. S., Nielsen, B., Fè, D., Ruud, A. K., Lenk, I., Greve, M. & Asp, T. (2025). The value of early root development traits in breeding programs for biomass yield in perennial ryegrass (Lolium perenne L.). Theoretical and Applied Genetics, 138(1), 31. Article 31. https://doi.org/10.1007/s00122-024-04797-5

Raffo, M. A., Sarup, P., Jensen, J., Guo, X., Jensen, J. D., Orabi, J., Jahoor, A. & Christensen, O. F. (2025). Genomic prediction for yield and malting traits in barley using metabolomic and near-infrared spectra. Theoretical and Applied Genetics, 138(1), Article 24. https://doi.org/10.1007/s00122-024-04806-7

Kunkel, D., Sørensen, P., Shankar, V. & Morgante, F. (2025). Improving polygenic prediction from summary data by learning patterns of effect sharing across multiple phenotypes. PLoS Genetics, 21(1), Article e1011519. https://doi.org/10.1371/journal.pgen.1011519

Yousaf, M. F., Naeem, M. & Bakar Zia, M. A. (2025). QTL Mapping for Drought Tolerance in Vegetables. In U. K. Chaudhry, Z. N. Öztürk & A. F. Gökçe (Eds.), Drought Stress: Review and Recommendations (pp. 369-392). Springer Nature. https://doi.org/10.1007/978-3-031-80610-0_14

Shrestha, M., Bai, Z., Gholipourshahraki, T., Hjelholt, A. J., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2025). Enhanced genetic fine mapping accuracy with Bayesian Linear Regression models in diverse genetic architectures. PLoS Genetics, 21(7), 1-30. Article e1011783. https://doi.org/10.1371/journal.pgen.1011783

Chegini, A., Strandén, I., Karaman, E., Iso-Touru, T., Pösö, J., Aamand, G. P. & Lidauer, M. H. (2025). Marker weighting improves single-step genomic prediction reliabilities of udder health traits in Nordic Red and Jersey dairy cattle populations. Journal of Dairy Science, 108(1), 651-663. https://doi.org/10.3168/jds.2024-25374, https://doi.org/10.3168/jds.2024-25374

Skovbjerg, C. K., Sarup, P. M., Wahlström, E., Jensen, J. D., Orabi, J., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program. Heredity, 134(1), 33-48. Article 63. https://doi.org/10.1038/s41437-024-00733-x

Kratschmer, A. K., Blicher-Mathiesen, G., Frederiksen, R. R., Thorsen, M., Janss, L. & Giannini-Kurina, F. (2025). Abstract 153 Satelite imaging insights on autumn cover, catch crop establishment, and nitrogen load in Danish catchments. Abstract from LuWQ2025. Land Use and Water Quality: Agriculture and the Environment , Aarhus, Denmark.

Lissner, E. S., Janns, L., Giannini-Kurina, F., Blicher-Mathiesen, G. & Thorsen, M. (2025). Abstract 154 Field-level nitrogen leadching and crop yield under extreme climate events. Abstract from LuWQ2025. Land Use and Water Quality: Agriculture and the Environment , Aarhus, Denmark.

White, E. L. F., Kjetså, M., Peippo, J., Morgan, L., Kantanen, J., Comizzoli, P., Steffensen, L. L., Kargo, M., Matson, T., Mayer, I. & Honkatukia, M. (2025). Across borders – the status and future opportunities for long-term conservation of Nordic animal genetic resources. Genetic Resources, 6(11), 57-70. https://doi.org/10.46265/genresj.baiq2696

Nielsen, H. M., Kargo, M. & Jørgensen, L. (2025). Avl tilpasset økologiske produktionssystemer og forbrugerpræferencer. In Program Økologikongres 2025

Drachmann, F. F., Johansen, K., Kargo, M., Buitenhuis, A. J. & Therkildsen, M. (2025). Beef-on-dairy: current and potential meat quality of dairy-based beef production with culled Holstein cows and Danish Blue × Holstein crossbred calves. Acta Agriculturae Scandinavica A: Animal Sciences, 74(1), 72-82. https://doi.org/10.1080/09064702.2024.2403656, https://doi.org/10.1080/09064702.2024.2403656

Sandrock, C., Generalovic, T. N., Paul, K., Petersen, G. E. L., Sellem, E., Smith, M. B., Tapio, M., Yakti, W., Beukeboom, L. W., Deruytter, D., Jiggins, C. D., Lefebvre, T., Librado, P., Pannebakker, B. A., Picard, C. J., Rhode, C., Sørensen, J. G., Bouwman, A. C., Hansen, L. S. & Obšteter, J. (2025). BugBook: Genetics of insects as food and feed. Journal of Insects as Food and Feed, 11(18), S397-S455. https://doi.org/10.1163/23524588-bja10260

Magnussen, M. G., Bouquet, A. E. R., Nielsen, H. M., Thomasen, J. R., Hjortø, L., Voergaard, J. L. & Kargo, M. (2025). Consequences of including CO2 taxes in the selection index of the Danish Blue line used for beef on dairy crossbreeding. In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (pp. 583-583). EAAP.

Jensen, K., Thormose, S., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Hansen, L. S., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2025). Controlled and polygynous mating in the black soldier fly: advancing breeding programs utilizing quantitative genetic designs. Journal of Insects as Food and Feed, 11(13), 2321-2331. Article 20142144. https://doi.org/10.1163/23524588-bja10205

Hansen, L. S., Bouwman, A. C., Sahana, G., Slagboom, M., Nielsen, H. M. & Ellen, E. D. (2025). Data for: Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation. Dataset, Dryad Digital Repository. https://doi.org/10.5061/dryad.h18931zx7

Christensen, T., Denver, S., Lund, T. B., Olsen, S. B., Nielsen, H. M., Kargo, M. & Sandøe, P. (2025). Do consumers want specialized breeding goals for organic dairy cows – and how much are they willing to pay for individual breeding traits?. Abstract from The International Food Marketing Research Symposium (IFMRS) 2025, Athen, Greece.

Balbuena, L., Åhs, F., Peters, E., Mendes-Silva, A. & Speed, D. (2025). Does the Path From Cigarette Smoking to Suicide Death Go Through the Hospital? A Causal Mediation Analysis in a National Canadian Sample. Tobacco Use Insights, 18. https://doi.org/10.1177/1179173X251349612

Zaalberg, R. M., Williams, C. & Leishman, E. M. (2025). From debate to dialogue – improving collaboration between animal welfare and genetics. In J. E. Bolhuis, I. Reimert, M. V. D. Sluis, K. Visser & T. B. Rodenburg (Eds.), Proceedings of the 58th Congress of the ISAE 2025: A good life for all animals (pp. 122). ISAE, International Society for Applied Ethology. https://isae2025utrecht.nl/wp-content/uploads/2025/08/ISAE_Proceedings_6aug.pdf

Zaalberg, R. M., Chu, T. T., Jensen, J. & Villumsen, T. M. (2025). Genetic analysis of number of functional teats, piglet survival, and piglet weight in organic pigs. In Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP) (pp. 361-364). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_78

Hein, L., Johansen, K. K., Buitenhuis, A. J., Liu, H. & Karaman, E. (2025). Genetic correlations between feed efficiency, methane emission and the traits in the Danish BeefxDairy evaluation. In Book of abstracts of the 76th Annual Meeting of the European Federation of Animal Science (EAAP) (pp. 584). EAAP. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Hastrup, R. L., Buitenhuis, A. J., Christensen, O. F. & Sørensen, A. C. (2025). Genetic correlations between slaughter loss and other economically important traits measured on live pigs in DanBred Yorkshire. In Book of abstracts of the 76th Annual Meeting of the European Federation of Animal Science (EAAP) (pp. 799). EAAP. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Schneider, H. H., Stephansen, R. B., Bjerring, M., Løvendahl, P., Lund, M. S. & Villumsen, T. M. (2025). Genomic prediction of methane emissions in Danish Holstein using single step and multi-trait prediction models. In Proceedings of the 2025 Interbull Meeting (61 ed., pp. 166-173) https://journal.interbull.org/index.php/ib/issue/view/73/8

Gebreyesus, G., Geissmann, Q., Boutrup, T., Overton, J. & Nielsen, H. M. (2025). Harvest weight can be used to predict filet yield in pike-perch (Sander Lucioperca). In Abstract Book of the XV International Symposium on Genetics in Aquaculture (pp. 114) https://isgaxv.com/wp-content/uploads/2025/05/AbstractsBookv2_LR.pdf

Eiríksson, J. H., Þórarinsdóttir, Þ., Gautason, E., Thomasen, J. R. & Liu, H. (2025). Icelandic dairy cattle: successful conservation but how can the breed keep profitable? In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Vol. 39, pp. 331)

Thomasen, J. R., Clasen, J., Fogh, A., Østergaard, S., Nielsen, H. M. & Kargo, M. (2025). Improved competitiveness of dairy producers through systematic crossbreeding – a holistic view. In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Vol. 39, pp. 581)

Baghooee, M. & Geissmann, Q. (2025). Insect Size Matters: Using Image and Dimensions Together Improves Image Classification. bioRxiv. https://doi.org/10.1101/2025.06.27.661916

Lissner, E. S., Janns, L., Thorsen, M. & Blicher-Mathiesen, G., (2025). Kvælstofmarkbalancer og nitratudvaskning: Modellering på data fra Landovervågningen, 39 p., Fagligt notat fra DCE – Nationalt Center for Miljø og Energi (2020-...) No. 73 https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Notater_2025/N2025_73.pdf

iPSYCH-MINERvA Group (2025). Maternal asthma and newborn DNA methylation. Clinical Epigenetics, 17(1), Article 79. https://doi.org/10.1186/s13148-025-01858-4

Guo, X., Sarup, P., Bay Nord, A., Henryon, M., Ostersen, T. & Christensen, O. F. (2025). Metabolomic-genomic prediction realizes small increases in accuracy of estimated breeding values for daily gain in pigs. Genetics Selection Evolution, 57(1), Article 24. https://doi.org/10.1186/s12711-025-00972-4

González-Recio, O., Pryce, J., Rowe, S., Sahana, G. & Gredler-Grandl, B. (2025). MicroHUB: An international initiative to modulate the rumen microbiome for methane mitigation. 136. Abstract from The 76th EAAP Annual Meeting, Innsbruck , Austria. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Barboza Bispo, R., Teixeira do Amaral Junior, A., Santos, T. D. O., de Lima, V. J., Simão, B. R., Freitas, M. S. M., Kamphorst, S. H., Carvalho, C. M., Lamêgo, D. L., Nicácio Viana, F., Bernardo, W. D. P., Campostrini, E. & Bressan-Smith, R. (2025). Morphophysiological approach to heterosis in phosphorus use efficiency in popcorn. Cogent Food & Agriculture, 11(1), Article 2452347. https://doi.org/10.1080/23311932.2025.2452347

Laursen, S. F., Nielsen, H. M., Bahrndorff, S., Sahana, G., Sørensen, J. G., Kristensen, T. N. & Hansen, L. S. (2025). Multi-trait pedigree-based selective breeding to optimise farmed insects: Evidence from a house fly population. Journal of Insects as Food and Feed, 11(16), 3017-3032. https://doi.org/10.1163/23524588-bja10247

Stephansen, R. B., Jensen, J., Poulsen, B. G., Nielsen, U. S., Andersen, T., Rius-Vilarrasa, E., F. Fikse, W., Pösö, J., Lidauer, M. H., Negussie, E., Lassen, J. & von Unge, F. (2025). Nordic Genetic Evaluation of Feed Efficiency – Updated Model for Saved Feed in Nordic Dairy Cattle Breeds. In Proceedings of the 2025 Interbull Meeting (pp. 224-230) https://journal.interbull.org/index.php/ib/issue/view/73/8

Tenhunen, S. R., Thomasen, J. R., Sørensen, L. P., Berg, P., Kargo, M., Nielsen, H. M. & Gorjanc, G. (2025). Optimizing Relatedness Penalties in Multi-Stage Optimal Contribution in Dairy Cattle Breeding Programs. In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Vol. 39, pp. 334)

Berrandou, T. E., Cordina-Duverger, E., Mulot, C., Guizard, A. V., Schvartz, C., Laurent-Puig, P., Zidane, M., De Vathaire, F., Guénel, P. & Truong, T. (2025). Polymorphisms in circadian rhythm genes and the risk of differentiated thyroid cancer. Frontiers in Genetics, 16, Article 1539090. https://doi.org/10.3389/fgene.2025.1539090

Nielsen, B., Kristensen, P. S., Sarup, P., Bjarup, P. & Orabi, J. (2025). Power calculations for testing genetic correlation between pure- and mixture line effects in wheat breeding. In EUCARPIA Biometrics in Plant Breeding, September 2025 (pp. 30) https://highlanderlab.github.io/EUCARPIA2025BiometricsPlantBreeding/assets/pdf/EUCARPIA_Programme_Booklet_web.pdf

Buitenhuis, A. J., Noel, S. J., Sørensen, A. C., Christensen, O. F. & Knudsen, K. E. B. (2025). Prediction of feed nitrogen and energy digestibility in pigs using fecal based NIR spectroscopy. In Book of abstracts of the 76th Annual Meeting of the European Federation of Animal Science (EAAP) (pp. 230). EAAP. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Zaalberg, R. M., Andersen, L. B., Hansen, L. S., Gebreyesus, G., Henryon, M., Jensen, K. & Nielsen, H. M. (2025). Strong potential for selection for larger larval size in the black soldier fly (Hermetia illucens). In Book of Abstracts of the 1 st EAAP Workshop on Insect Genetic Improvement, Implementation, Impact (pp. 41-41). EAAP. https://docs.eaap.org/boa/2025_insectIMP_Book_Abstracts.pdf

Muchina, P. K., Kinyua, J., Khamis, F., MBI Tanga, C., Gebreyesus, G., Cai, Z. & Sahana, G. (2025). The genomic landscape of Hermetia illucens: exploring the potential of the black soldier fly through molecular insights. Journal of Insects as Food and Feed, 11(12), 2049-2074. https://doi.org/10.1163/23524588-bja10200

Costes, V., Lopez-Catalina, A., Raja Ravi Shankar , A., Chaulot-Talmon, A., Costa-Monteiro-Moreira , G., Cai, Z., Sahana, G., Boussaha, M., Fritz, S., Ibeagha-Awemu, E., Bissonette, N., Powell, J., Navarro, P., Clarke, S., Coulton , A., Foucras, G., Rico , D., Lefebvre, R., Takeda, K. ... Kiefer, H. (2025). The RUMIGEN Epichip: a versatile, medium density DNA methylation BeadChip for large population studies in cattle. 568. Abstract from The 76th EAAP Annual Meeting, Innsbruck , Austria. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Blicher-Mathiesen, G., Larsen, S. E., Rasmussen, J. J., Thorsen, M., Seidenfaden, I. K., Troldborg, L., Ondracek, M., ten Damme, L., Neumann Andersen3, M., Kratschmer, A. K., Lissner, E. S., Tornbjerg, H. & Thodsen, H. (2025). Tørkes betydning for kvælstofudledning, vandføring og biologi i vandløb: Perspektiver for klimasikring og forvaltning af vores vandressourcer. Aarhus University, DCE - Danish Centre for Environment and Energy. Videnskabelig rapport fra DCE - Nationalt Center for Miljø og Energi No. 646 https://dce.au.dk/fileadmin/dce.au.dk/Udgivelser/Videnskabelige_rapporter_600-699/SR646.pdf

Verweij, J. W., Buitenhuis, A. J., Chu, T. T. & Nielsen, H. M. (2025). TROUTGANIC: Establishment of an organic line of rainbow trout. 227. Poster session presented at XV International Symposium on Genetics in Aquaculture, Cadíz, Spain.

Displaying results 101 to 200 out of 6830

Revised 19.03.2025

Jette Odgaard Villemoes