Publications

2015

Contribution to journal

Li, X., Buitenhuis, A. J., Lund, M. S., Li, C., Sun, D., Zhang, Q., Poulsen, N. A. & Su, G. (2015). Joint genome-wide association study for milk fatty acid traits in Chinese and Danish Holstein populations. Journal of Dairy Science, 98(11), 8152-8163. https://doi.org/10.3168/jds.2015-9383

Legarra, A., Christensen, O. F., Vitezica, Z. G., Aguilar, I. & Misztal, I. (2015). Ancestral Relationships Using Metafounders: Finite Ancestral Populations and Across Population Relationships. Genetics (Print), 200(2), 455-468. https://doi.org/10.1534/genetics.115.177014

Kadri, N. K., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2015). Genetic dissection of milk yield traits and mastitis resistance QTL on chromosome 20 in dairy cattle. Journal of Dairy Science, 98(12), 9015-9025. https://doi.org/10.3168/jds.2015-9599

Gianola, D., de los Campos, G., Toro, M. A., Naya, H., Schön, C.-C. & Sorensen, D. (2015). Do Molecular Markers Inform About Pleiotropy? Genetics, 201(1), 23-29. https://doi.org/10.1534/genetics.115.179978

Edwards, D. (2015). Two molecular measures of relatedness based on haplotype sharing. B M C Bioinformatics, 16(383), 1-11. https://doi.org/10.1186/s12859-015-0802-y

Do, D. N., Janss, L., Jensen, J. & Kadarmideen, H. N. (2015). SNP annotation-based whole genomic prediction and selection: an application to feed efficiency and its component traits in pigs. Journal of Animal Science, 93(5), 2056-2063. https://doi.org/10.2527/jas.2014-8640

de los Campos, G., Sorensen, D. & Gianola, D. (2015). Genomic Heritability: What Is It? P L o S Genetics, 11(5), 1-21. https://doi.org/10.1371/journal.pgen.1005048

Castro Dias Cuyabano, B., Su, G., Rosa, G. J. M., Lund, M. S. & Gianola, D. (2015). Bootstrap study of genome-enabled prediction reliabilities using haplotype blocks across Nordic Red cattle breeds. Journal of Dairy Science, 98(10), 7351-63. https://doi.org/10.3168/jds.2015-9360

Brøndum, R. F., Su, G., Janss, L., Sahana, G., Guldbrandtsen, B., Boichard, D. A. & Lund, M. S. (2015). Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction. Journal of Dairy Science, 98(6), 4107-4116. https://doi.org/10.3168/jds.2014-9005

2014

Contribution to conference

Zhang, Q., Guldbrandtsen, B., Bosse, M., Lund, M. S. & Sahana, G. (2014). Runs of homozygosity and distribution of functional variants in cattle genome. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/67ND0x1HWf

van den Berg, I., Guldbrandtsen, B., Hozé, C., Brøndum, R. F., Boichard, D. A. & Lund, M. S. (2014). Across Breed QTL Detection and Genomic Prediction in French and Danish Dairy Cattle Breeds. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/DtbvU7eMTN

Sørensen, P., Edwards, S. M. & Rohde, P. D. (2014). Genomic Feature Models. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://asas.org/docs/default-source/wcgalp-proceedings-oral/303_paper_10280_manuscript_1285_0.pdf

Sarup, P. M., Jensen, J., Edwards, S. M., Ostersen, T., Sørensen, P. & Henryon, M. A. (2014). Separating Signal from Noise Estimating SNP-effects and Decomposing Genetic Variation to the Level of QTLs in Pure Breed Duroc Pigs. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/8tN0Up65ZB

Sahana, G., Janss, L., Guldbrandtsen, B. & Lund, M. S. (2014). Genetic Architecture of Milk, Fat, Protein, Mastitis and Fertility Studied using NGS Data in Holstein Cattle. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/SPE1ZV6qCw

Rohde, P. D., Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Gene-based Association Approach Identify Genes Across Stress Traits in Fruit Flies. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://asas.org/docs/default-source/wcgalp-posters/673_paper_9223_manuscript_493_0.pdf

Morgante, F., Sorensen, D. A., Sørensen, P., Maltecca, C. & Mackay, T. F. C. (2014). Genetic Analysis of Micro-environmental Plasticity in Drosophila melanogaster. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/PabaGIO0N3

Lund, M. S. (2014). How to Improve Genomic Predictions in Small Populations. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/jSOg2jQvAY

Lopes, M. S., Bastiaansen, J. W. M., Janss, L., Bovenhuis, H. & Knol, E. F. (2014). Using SNP markers to estimate additive, dominance and imprinting genetic variance. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/l8lt5Q5qu9

Liu, H., Sørensen, A. C. & Berg, P. (2014). Optimum contribution selection combined with weighting rare favourable alleles increases long-term genetic gain. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/ppfvJcCuPy

Janss, L. (2014). Disentangling Pleiotropy along the Genome using Sparse Latent Variable Models. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/2NusKyePpB

Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Influence of Family Structure on Variance Decomposition. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://asas.org/docs/default-source/wcgalp-posters/691_paper_8972_manuscript_1723_0.pdf

Do, D. N., Janss, L. L. G., Strathe, A. B. & Kadarmideen, H. N. (2014). Genomic prediction and genomic variance partitioning of daily and residual feed intake in pigs using Bayesian Power Lasso models. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/cyOeeK9Wto

de los Campos, G., Sorensen, D. & Gianola, D. (2014). What is it?. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada.

Christensen, O. F., Madsen, P. & Nielsen, B. (2014). Genomic Evaluation of Both Purebred and Crossbred Performances. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/mXQraRHJs8

Brøndum, R. F., Su, G., Janss, L., Sahana, G. & Lund, M. S. (2014). Genomic prediction using QTL derived from whole genome sequence data. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/hDodVMMoTo

van den Berg, I., Guldbrandtsen, B., Hozé, C., Brøndum, R. F., Boichard, D. A. & Lund, M. S. (2014). Across Breed QTL Detection and Genomic Prediction in French and Danish Dairy Cattle Breeds. Poster session presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/DtbvU7eMTN

Rohde, P. D., Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Gene-based Association Approach Identify Genes Across Stress Traits in Fruit Flies. Poster session presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/ztj3NIVR9W

Morgante, F., Sorensen, D. A., Sørensen, P., Maltecca, C. & Mackay, T. F. C. (2014). Genetic Analysis of Micro-environmental Plasticity in Drosophila melanogaster. Poster session presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/PabaGIO0N3

Li, X., Buitenhuis, A. J., Li, C., Sun, D., Zhang, Q., Lund, M. S. & Su, G. (2014). Genome-wide association of milk fatty acids in Chinese and Danish Holstein populations. Poster session presented at 65th Annual Meeting of the European Federation for Animal Science (EAAP). August 25-29 2014. Copenhagen, Denmark, Denmark.

Edwards, S. M., Sarup, P. M. & Sørensen, P. (2014). Influence of Family Structure on Variance Decomposition. Poster session presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014#/activity/ajh1hqcoyE

2014

Contribution to book anthology

Su, G., Christensen, O. F., Janss, L. & Lund, M. S. (2014). Genomic prediction using genomic relationship matrix weighted with SNP variances estimated from Bayesian mixture model. In Book of Abstracts of the 65th Annual Meeting of the European Federation of Animal Science (Vol. 20, pp. 217-217). Wageningen Academic Publishers. http://www.wageningenacademic.com/eaap2014

Ashraf, B., Fé, D., Jensen, J., Byrne, S., Asp, T., Greve-Pedersen, M., Lenk, I., Jensen, C. S. & Janss, L. (2014). Genomic Variance Estimation Based on Genotyping-by-Sequencing with Different Coverage in Perennial Ryegrass. In Proceeding of Plant & Animal Genome XXII: The International Conference on the Status of Plant & Animal Genome Research (pp. 157-157).

Meier, K., Sørensen, A. C., Thirstrup, J. P. & Lund, M. S. (2014). Genomic selection in mink (Neovison vison) - A simulation study. In NJF Seminar no 482 - Annual Authumn Meeting in Fur Animal Research 2014 (pp. 122-129). NJF, Nordic Association of Agricultural Scientists.

Fé, D., Ashraf, B., Byrne, S., Czaban, A., Roulund, N., Lenk, I., Asp, T., Pedersen, M. G., Jensen, C. S., Janss, L. & Jensen, J. (2014). Prospects for introducing genomic selection info forage grass breeding. In Proceedings of the 25th General Meeting of the European Grassland Federation (pp. 830-832)

2014

Contribution to journal

Sørensen, P., Edwards, S. M., Sarup, P. M. & Sorensen, D. A. (2014). Sequence-based partitioning of genomic variance using prior biological information. EAAP Book of Abstracts, 20, 167-167. http://www.wageningenacademic.com/eaap2014

Sarup, P. M., Guldbrandtsen, B., Nielsen, B. N., Sørensen, P. & Jensen, J. (2014). Imputation from 60K SNP data to whole-genome level in Danish Landrace and Duroc pigs. EAAP Book of Abstracts, 169-169. http://www.wageningenacademic.com/eaap2014

Lund, M. S., Su, G., Janss, L., Guldbrandtsen, B. & Brøndum, R. F. (2014). Genomic evaluation of cattle in a multi-breed context. Livestock Science, 166, 101-110. https://doi.org/10.1016/j.livsci.2014.05.008

Henryon, M., Berg, P. & Sørensen, A. C. (2014). Animal-breeding schemes using genomic information need breeding plans designed to maximise long-term genetic gains. Livestock Science, 166, 38-47. https://doi.org/10.1016/j.livsci.2014.06.016

Su, G., Christensen, O. F., Janss, L. & Lund, M. S. (2014). Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances. Journal of Dairy Science, 97(10), 6547-6559. https://doi.org/10.3168/jds.2014-8210

Rohde, P. D. (2014). Psykofluer - bananfluer som model for psykiske sygdomme. Aktuel Naturvidenskab, 5, 34-37.

Daetwyler, H. D., Capitan, A., Pausch, H., Stothard, P., van Binsbergen, R., Brøndum, R. F., Liao, X., Djari, A., Rodriguez, S. C., Grohs, C., Jung, S., Esquerré, D., Bouchez, O., Gollnick, N. S., Rossignol, M.-N., Klopp, C., Rocha, D., Fritz, S., Eggen, A. ... Hayes, B. J. (2014). Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics, 46(8), 858 - 865.

Christensen, O. F., Madsen, P., Nielsen, B. & Su, G. (2014). Genomic evaluation of both purebred and crossbred performances. Genetics Selection Evolution, 46(23), 1-16. https://doi.org/10.1186/1297-9686-46-23

Buitenhuis, B., Janss, L. L. G., Poulsen, N. A., Larsen, L. B., Larsen, M. K. & Sørensen, P. (2014). Genome-wide association and biological pathway analysis for milk-fat composition in Danish Holstein and Danish Jersey cattle. B M C Genomics, 15(1112), 1-11. https://doi.org/10.1186/1471-2164-15-1112

Brøndum, R. F., Guldbrandtsen, B., Sahana, G., Lund, M. S. & Su, G. (2014). Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle. B M C Genomics, 15(728), 1-8. https://doi.org/10.1186/1471-2164-15-728

Byrne, S., Czaban, A., Studer, B., Panitz, F., Bendixen, C. & Asp, T. (2013). Genome Wide Allele Frequency Fingerprints (GWAFFs) of populations via genotyping by sequencing. P L o S One, 8(3), Article e57438. https://doi.org/10.1371/journal.pone.0057438

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