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Center for Quantitative Genetics and Genomics

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2021

Contribution to journal

Rohde, P. D., Nyegaard, M., Kjolby, M. & Sørensen, P. (2021). Multi-Trait Genomic Risk Stratification for Type 2 Diabetes. Frontiers in Medicine, 8, [711208]. https://doi.org/10.3389/fmed.2021.711208

Rohde, P. D., Kristensen, T. N., Sarup, P., Muñoz, J. & Malmendal, A. (2021). Prediction of complex phenotypes using the Drosophila melanogaster metabolome. Heredity, 126(5), 717-732. https://doi.org/10.1038/s41437-021-00404-1

Pan, Z., Yao, Y., Yin, H., Cai, Z., Wang, Y., Bai, L., Kern, C., Halstead, M., Chanthavixay, G., Trakooljul, N., Wimmers, K., Sahana, G., Su, G., Lund, M. S., Fredholm, M., Karlskov-Mortensen, P., Ernst, C. W., Ross, P., Tuggle, C. K. ... Zhou, H. (2021). Pig genome functional annotation enhances the biological interpretation of complex traits and human disease. Nature Communications, 12(1), [5848]. https://doi.org/10.1038/s41467-021-26153-7

Milkevych, V., Karaman, E., Sahana, G., Janss, L., Cai, Z. & Lund, M. S. (2021). MeSCoT: The tool for quantitative trait simulation through the mechanistic modeling of genes' regulatory interactions. G3 (Bethesda, Md.), 11(7), [jkab133]. https://doi.org/10.1093/g3journal/jkab133

Mei, Q., Fu, C., Sahana, G., Chen, Y., Yin, L., Miao, Y., Zhao, S. & Xiang, T. (2021). Identification of new semen trait-related candidate genes in Duroc boars through genome-wide association and weighted gene co-expression network analyses. Journal of Animal Science, 99(7), [skab188]. https://doi.org/10.1093/jas/skab188

Manzanilla Pech, C. I. V., Løvendahl, P., Mansan Gordo, D. G., Difford, G., Pryce, J., Schenkel, F. S., Wegmann, S., Miglior, F., Chud, T. C. S., Moate, P. J., Williams, S. R. O., Richardson, C. M., Stothard, P. & Lassen, J. (2021). Breeding for reduced methane emission and feed-efficient Holstein cows: An international response. Journal of Dairy Science, 104(8), 8983-9001. https://doi.org/10.3168/jds.2020-19889

Macedo, F. L., Christensen, O. F. & Legarra, A. (2021). Selection and drift reduce genetic variation for milk yield in Manech Tête Rousse dairy sheep. JDS Communications , 31-34. https://doi.org/10.3168/jdsc.2020-0010

Ma, X., Christensen, O. F., Gao, H., Huang, R., Nielsen, B., Madsen, P., Jensen, J., Ostersen, T., Li, P., Shirali, M. & Su, G. (2021). Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait. Heredity, 126(1), 206-217. https://doi.org/10.1038/s41437-020-0339-3

Luo, H., Brito, L. F., Li, X., Su, G., Dou, J., Xu, W., Yan, X., Zhang, H., Guo, G., Liu, L. & Wang, Y. (2021). Genetic parameters for rectal temperature, respiration rate, and drooling score in Holstein cattle and their relationships with various fertility, production, body conformation, and health traits. Journal of Dairy Science, 104(4), 4390-4403. https://doi.org/10.3168/jds.2020-19192

Laursen, S. F., Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Noer, N. K., Renault, D., Sahana, G., Sørensen, J. G. & Kristensen, T. N. (2021). Contrasting Manual and Automated Assessment of Thermal Stress Responses and Larval Body Size in Black Soldier Flies and Houseflies. Insects, 12(5), [380]. https://doi.org/10.3390/insects12050380

Kargo, M., Clasen, J. B., Nielsen, H. M., Byskov, K. & Norberg, E. (2021). Heterosis and breed effects for milk production and udder health traits in crosses between Danish Holstein, Danish Red, and Danish Jersey. Journal of Dairy Science, 104(1), 678-682. https://doi.org/10.3168/jds.2019-17866

Karaman, E., Su, G., Croue, I. & Lund, M. S. (2021). Genomic prediction using a reference population of multiple pure breeds and admixed individuals. Genetics Selection Evolution, 53, [46]. https://doi.org/10.1186/s12711-021-00637-y

Houlahan, K., Schenkel, F. S., Hailemariam, D., Lassen, J., Kargo, M., Cole, J. B., Connor, E. E., Wegmann, S., Oliveira, G. A., Miglior, F., Fleming, A., Chud, T. C. S. & Baes, C. F. (2021). Effects of incorporating dry matter intake and residual feed intake into a selection index for dairy cattle using deterministic modeling. Animals, 11(4), [1157]. https://doi.org/10.3390/ani11041157

Hjortø, L., Henryon, M., Liu, H., Berg, P., Thomasen, J. R. & Sørensen, A. C. (2021). Pre-selection against a lethal recessive allele in breeding schemes with optimum-contribution selection or truncation selection. Genetics Selection Evolution, 53, [75]. https://doi.org/10.1186/s12711-021-00669-4

Handegård, K. W., Madsen, P., Storengen, L. M. & Lingaas, F. (2021). Genetic parameters for noise reactivity in standard poodles. Journal of Veterinary Behavior, 45, 33-36. https://doi.org/10.1016/j.jveb.2021.06.005

Gebreyesus, G., Lund, M. S., Kupisiewicz, K. & Su, G. (2021). Genetic parameters of semen quality traits and genetic correlations with service sire nonreturn rate in Nordic Holstein bulls. Journal of Dairy Science, 104(9), 10010-10019. https://doi.org/10.3168/jds.2021-20403

Gebreyesus, G., Lund, M. S., Sahana, G. & Su, G. (2021). Reliabilities of Genomic Prediction for Young Stock Survival Traits Using 54K SNP Chip Augmented With Additional Single-Nucleotide Polymorphisms Selected From Imputed Whole-Genome Sequencing Data. Frontiers in Genetics, 12, [667300]. https://doi.org/10.3389/fgene.2021.667300

Gebreyesus, G., Poulsen, N. A., Larsen, M. K., Larsen, L. B., Sørensen, E. S., Würtz Heegaard, C. & Buitenhuis, A. J. (2021). Vitamin B12 and transcobalamin in bovine milk: Genetic variation and genome-wide association with loci along the genome. JDS Communications , 2(3), 127-131. https://doi.org/10.3168/jdsc.2020-0048

Gautason, E., Sahana, G., Su, G., Benjamínsson, B. H., Jóhannesson, G. & Guldbrandtsen, B. (2021). Short Communication: Investigation of the feasibility of genomic selection in Icelandic Cattle. Journal of Animal Science, 99(7), [skab139]. https://doi.org/10.1093/jas/skab139

Gao, H., Su, G., Jensen, J., Madsen, P., Christensen, O. F., Ask, B., Poulsen, B. G., Ostersen, T. & Nielsen, B. (2021). Genetic parameters and genomic prediction for feed intake recorded at the group and individual level in different production systems for growing pigs. Genetics Selection Evolution, 53(1), [33]. https://doi.org/10.1186/s12711-021-00624-3

Fu, C., Ostersen, T., Christensen, O. F. & Xiang, T. (2021). Single-step genomic evaluation with metafounders for feed conversion ratio and average daily gain in Danish Landrace and Yorkshire pigs. Genetics Selection Evolution, 53(1), 79. [79]. https://doi.org/10.1186/s12711-021-00670-x

Eydivandi, S., Roudbar, M. A., Karimi, M. O. & Sahana, G. (2021). Genomic scans for selective sweeps through haplotype homozygosity and allelic fixation in 14 indigenous sheep breeds from Middle East and South Asia. Scientific Reports, 11, [2834]. https://doi.org/10.1038/s41598-021-82625-2

Esfandyari, H. & Jensen, J. (2021). Simultaneous Bayesian estimation of genetic parameters for curves of weight, feed intake, and residual feed intake in beef cattle. Journal of Animal Science, 99(9). https://doi.org/10.1093/jas/skab231

Eiríksson, J. H., Karaman, E., Su, G. & Christensen, O. F. (2021). Breed of origin of alleles and genomic predictions for crossbred dairy cows. Genetics Selection Evolution, 53, [84]. https://doi.org/10.1186/s12711-021-00678-3

Clasen, J. B., Kargo, M., Fikse, W. F., Strandberg, E., Wallenbeck, A., Østergaard, S. & Rydhmer, L. (2021). Conservation of a native dairy cattle breed through terminal crossbreeding with commercial dairy breeds. Acta Agriculturae Scandinavica A: Animal Sciences, 70(1). https://doi.org/10.1080/09064702.2020.1867632

Clasen, J. B., Kargo, M., Østergaard, S., Fikse, W. F., Rydhmer, L. & Strandberg, E. (2021). Genetic consequences of terminal crossbreeding, genomic test, sexed semen, and beef semen in dairy herds. Journal of Dairy Science, 104(7), 8062-8075. https://doi.org/10.3168/jds.2020-20028

Chu, T. T., Henryon, M., Jensen, J., Ask, B. & Christensen, O. F. (2021). Statistical model and testing designs to increase response to selection with constrained inbreeding in genomic breeding programs for pigs affected by social genetic effects. Genetics Selection Evolution, 53(1), [1]. https://doi.org/10.1186/s12711-020-00598-8

Christensen, B., Zachariae, E. D., Poulsen, N. A., Buitenhuis, A. J., Larsen, L. B. & Sørensen, E. S. (2021). Factors influencing milk osteopontin concentration based on measurements from Danish Holstein cows. Journal of Dairy Research, 88(1), 89 - 94. https://doi.org/10.1017/S0022029921000054

Christensen, O. F., Börner, V., Varona, L. & Legarra, A. (2021). Genetic evaluation including intermediate omics features. Genetics, 219(2), [iyab130]. https://doi.org/10.1093/genetics/iyab130

Cao, L., Mulder, H. A., Liu, H., Nielsen, H. M. & S⊘rensen, A. C. (2021). Competitive gene flow does not necessarily maximize the genetic gain of genomic breeding programs in the presence of genotype-by-environment interaction. Journal of Dairy Science, 104(7), 8122-8134. https://doi.org/10.3168/jds.2020-19823

Bellamy, K. K. L., Lingaas, F. & Madsen, P. (2021). Heritability of distichiasis in Havanese dogs in Norway. Canine medicine and genetics, 8(1), [11]. https://doi.org/10.1186/s40575-021-00110-5

Atrian-Afiani, F., Gao, H., Joezy-Shekalgorabi, S., Madsen, P., Aminafshar, M., Ali, S. & Jensen, J. (2021). Genotype by climate zone interactions for fertility, somatic cell score, and production in Iranian Holsteins. Journal of Dairy Science, 104(12), 12994-13007. https://doi.org/10.3168/jds.2020-20084, https://doi.org/10.3168/jds.2020-20084

Ask, B., Pedersen, L. V., Christensen, O. F., Nielsen, H. M., Turner, S. P. & Nielsen, B. (2021). Selection for social genetic effects in purebreds increases growth in crossbreds. Genetics, selection, evolution : GSE, 53(1), [15]. https://doi.org/10.1186/s12711-021-00609-2

Afiani, F. A., Joezy-Shekalgorabi, S., Amin-Afshar, M., Sadeghi, A-A. & Jensen, J. (2021). Additive genetic and permanent environmental correlation between different parts of lactation in moderate and cold regions. Czech Journal of Animal Science, 66(4), 112-121. https://doi.org/10.17221/254/2020-CJAS

2020

Hutchings, N., Lærke, P. E., Munkholm, L. J., Elsgaard, L., Kristensen, T., Rasmussen, J., Lund, P., Børsting, C. F., Løvendahl, P., Mikkelsen, M. H., Albrektsen, R., Gyldenkærne, S., Møller, H. B., Hansen, M. J., Feilberg, A. & Adamsen, A. P. S., (2020). Opdatering af effekter og potentialer af klimavirkemidler til anvendelse i landbrug, No. 2019-0035910, 23 p., Mar 02, 2020.

2020

Contribution to conference

Zaalberg, R. M., Bovenhuis, H., Poulsen, N. A., Larsen, L. B., Sehested, J. & Buitenhuis, A. J. (2020). Genetic analysis on minerals predicted with Fourier transform infrared milk spectra for two Danish dairy cattle breeds. Abstract from 71st Annual Meeting of European Federation of Animal Science. https://www.wageningenacademic.com/doi/book/10.3920/978-90-8686-900-8

Sarup, P., Guo, X., Nielsen, N., Jensen, J. D., Mulder, F., Jihad, O., Edriss, V., Jahoor, A. & Jensen, J. (2020). Using NMR metabolomics in breeding for malt quality in spring barley. Abstract from International Symposium of the Society for Plant Breeding (GPZ), Tulln, Austria. https://gpz2020.boku.ac.at/wp-content/uploads/2020/03/06_Sarup.pdf

Rome, H. J. S., Marois, D., Huang, C-H. & Jensen, J. (2020). Modeling maternal effects in later traits in broilers. Abstract from 71st Annual Meeting of European Federation of Animal Science.

Mesbah-Uddin, M., Guldbrandtsen, B., Capitan, A., Lund, M. S., Boichard, D. & Sahana, G. (2020). Strategy to imputation of large genomic deletions and utilizing them in mapping and genomic prediction in cattle. Abstract from 6th International Conference of Quantitative Genetics, Brisbane, Australia. https://icqg6.org/wp-content/uploads/2020/11/ICQG6_2020_Abstract_Book.pdf

Manzanilla Pech, C. I. V., Mansan Gordo, D. G., Løvendahl, P. & Lassen, J. (2020). Genome wide association study of methane traits in Danish Holstein. Abstract from 6th International Conference of Quantitative Genetics, Brisbane, Australia. https://icqg6.org/wp-content/uploads/2020/11/ICQG6_2020_Abstract_Book.pdf

Karaman, E., Su, G., Croue, I. & Lund, M. S. (2020). Genomic prediction using a multi-breed reference data of purebred and admixed populations. Abstract from 6th International Conference of Quantitative Genetics, Brisbane, Australia.

Karaman, E., Su, G., Croue, I. & Lund, M. S. (2020). Genomic prediction using data from multiple pure breeds and crossbreds. Abstract from 71st Annual Meeting of European Federation of Animal Science.

Eiriksson, J. H., Karaman, E., Su, G. & Christensen, O. F. (2020). Genomic prediction for crossbred cows by combining marker effects estimated in purebreds. Abstract from 71st Annual Meeting of European Federation of Animal Science. https://www.wageningenacademic.com/doi/book/10.3920/978-90-8686-900-8

Christensen, O. F., Börner, V., Varona, L. & Legarra, A. (2020). Genetic evaluation including an intermediate omics trait. Abstract from 71st Annual Meeting of European Federation of Animal Science. https://www.wageningenacademic.com/doi/book/10.3920/978-90-8686-900-8

2020

Contribution to book anthology

Vestergaard, M., Spleth, P., Stephansen, R., Kargo, M., Ettema, J. F. & Fogh, A. (2020). Utilizing beef x dairy crossbreds for beef production – Danish experiences. In Book of Abstracts of the 71st Annual Meeting of the European Federation of Animal Science (Vol. 26, pp. 317). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-900-8

2020

Book anthology

Su, G., Höglund, J., Christensen, O. F. & Lund, M. S. (2020). Possibilities for genetic improvement of pig survival until slaughter. DCA - Nationalt Center for Fødevarer og Jordbrug.

2020

Contribution to journal

Karaman, E., Lund, M. S. & Su, G. (2020). Correction: Multi-trait single-step genomic prediction accounting for heterogeneous (co)variances over the genome . Heredity, 124(4), 618. https://doi.org/10.1038/s41437-020-0299-7

Christensen, O. F., Nielsen, B., Su, G., Xiang, T., Madsen, P., Ostersen, T., Velander, I. & Strathe, A. B. (2020). Correction to: A bivariate genomic model with additive, dominance and inbreeding depression effects for sire line and three-way crossbred pigs. Genetics, selection, evolution : GSE, 52(1), [23]. https://doi.org/10.1186/s12711-020-00541-x

Rohde, P. D. & Kristensen, T. N. (2020). Untangling the genetic basis of drug response. Pharmacogenomics, 21(2), 87-89. https://doi.org/10.2217/pgs-2019-0155

Jensen, J. (2020). Carrying the torch of the Journal of Animal Breeding and Genetics forward. Journal of Animal Breeding and Genetics, 137(1), 1-2. https://doi.org/10.1111/jbg.12462

Zhang, Q., Difford, G., Sahana, G., Løvendahl, P., Lassen, J., Lund, M. S., Guldbrandtsen, B. & Janss, L. (2020). Bayesian modeling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows. The ISME Journal, 14(8), 2019-2033. https://doi.org/10.1038/s41396-020-0663-x

Zhang, Q., Cai, Z., Lhomme, M., Sahana, G., Lesnik, P., Guerin, M., Fredholm, M. & Karlskov-Mortensen, P. (2020). Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels. Scientific Reports, 10(1), [18434]. https://doi.org/10.1038/s41598-020-75612-6

Zaalberg, R. M., Buitenhuis, A. J., Sundekilde, U. K., Poulsen, N. A. & Bovenhuis, H. (2020). Genetic analysis of orotic acid predicted with Fourier transform infrared milk spectra. Journal of Dairy Science, 103(4), 3334-3348. https://doi.org/10.3168/jds.2018-16057

Zaalberg, R. M., Janss, L. & Buitenhuis, A. J. (2020). Genome-wide association study on Fourier transform infrared milk spectra for two Danish dairy cattle breeds. BMC Genetics, 21(1), [9]. https://doi.org/10.1186/s12863-020-0810-4

Wu, X., Mesbah-Uddin, M., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2020). Novel haplotypes responsible for prenatal death in Nordic Red and Danish Jersey cattle. Journal of Dairy Science, 103(5), 4570-4578. https://doi.org/10.3168/jds.2019-17831

Wang, X., Su, G., Hao, D., Lund, M. S. & Kadarmideen, H. N. (2020). Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations. Journal of Animal Science and Biotechnology, 11(1), [3]. https://doi.org/10.1186/s40104-019-0407-9

Wang, L., Janss, L. L., Madsen, P., Henshall, J., Huang, C-H., Marois, D., Alemu, S., Sørensen, A. C. & Jensen, J. (2020). Effect of genomic selection and genotyping strategy on estimation of variance components in animal models using different relationship matrices. Genetics, selection, evolution : GSE, 52(1), [31]. https://doi.org/10.1186/s12711-020-00550-w

Tsai, H-Y., Janss, L. L., Andersen, J. R., Orabi, J., Jensen, J. D., Jahoor, A. & Jensen, J. (2020). Genomic prediction and GWAS of yield, quality and disease-related traits in spring barley and winter wheat. Scientific Reports, 10(1), [3347]. https://doi.org/10.1038/s41598-020-60203-2

Tsai, H-Y., Cericola, F., Edriss, V., Andersen, J. R., Orabi, J., Jensen, J. D., Jahoor, A., Janss, L. & Jensen, J. (2020). Use of multiple traits genomic prediction, genotype by environment interactions and spatial effect to improve prediction accuracy in yield data. PLOS ONE, 15(5), [e0232665]. https://doi.org/10.1371/journal.pone.0232665

Thomasen, J. R., Liu, H. & Sørensen, A. C. (2020). Genotyping more cows increases genetic gain and reduces rate of true inbreeding in a dairy cattle breeding scheme using female reproductive technologies. Journal of Dairy Science, 103(1), 597-606. https://doi.org/10.3168/jds.2019-16974

Tessema, B. B., Liu, H., Sørensen, A. C., Andersen, J. R. & Jensen, J. (2020). Strategies Using Genomic Selection to Increase Genetic Gain in Breeding Programs for Wheat. Frontiers in Genetics, 11, [578123]. https://doi.org/10.3389/fgene.2020.578123

Tausen, M., Clausen, M. M., Moeskjær, S., Shihavuddin, ASM., Dahl, A. B., Janss, L. & Andersen, S. U. (2020). Greenotyper: Image-based plant phenotyping using distributed computing and deep learning. Frontiers in Plant Science, 11, [1181]. https://doi.org/10.3389/fpls.2020.01181

Su, G., Sørensen, A. C., Chu, T. T., Meier, K., Nielsen, T. & Lund, M. S. (2020). Impact of phenotypic information and composition of reference population on genomic prediction in fish under the presence of genotype by environment interaction. Aquaculture, 526, [735358]. https://doi.org/10.1016/j.aquaculture.2020.735358

Slagboom, M., Hjortø, L., Sørensen, A. C., Mulder, H. A., Thomasen, J. R. & Kargo, M. (2020). Possibilities for a specific breeding program for organic dairy production. Journal of Dairy Science, 103(7), 6332-6345. https://doi.org/10.3168/jds.2019-16900

Schonherz, A. A., Szekeres, B. D., Nielsen, V. H. & Guldbrandtsen, B. (2020). Population structure and genetic characterization of two native Danish sheep breeds. Acta Agriculturae Scandinavica, Section A - Animal Science, 69(1-2), 53-67. https://doi.org/10.1080/09064702.2019.1639804

Rohde, P. D., Fourie Sørensen, I. & Sørensen, P. (2020). qgg: an R package for large-scale quantitative genetic analyses. Bioinformatics (Oxford, England), 36(8), 2614-2615. https://doi.org/10.1093/bioinformatics/btz955

Poulsen, B. G., Nielsen, B., Ostersen, T. & Christensen, O. F. (2020). Genetic associations between stayability and longevity in commercial crossbred sows, and stayability in multiplier sows. Journal of Animal Science, 98(6), [skaa183]. https://doi.org/10.1093/jas/skaa183

Poulsen, N. A., Szekeres, B. D., Kargo, M. & Larsen, L. B. (2020). Mineral and fatty acid composition of milk from native Jutland and Danish Red 1970 cattle breeds. Acta Agriculturae Scandinavica A: Animal Sciences, 69(1-2), 131-135. https://doi.org/10.1080/09064702.2019.1674914

Poulsen, B. G., Ask, B., Nielsen, H. M., Ostersen, T. & Christensen, O. F. (2020). Prediction of genetic merit for growth rate in pigs using animal models with indirect genetic effects and genomic information. Genetics, selection, evolution : GSE, 52, [58]. https://doi.org/10.1186/s12711-020-00578-y

Poulsen, N. A., Hein, L., Kargo, M. & Buitenhuis, A. J. (2020). Realization of breeding values for milk fatty acids in relation to seasonal variation in organic milk. Journal of Dairy Science, 103(3), 2434-2441. https://doi.org/10.3168/jds.2019-17065

Olijhoek, D. W., Difford, G. F., Lund, P. & Løvendahl, P. (2020). Phenotypic modeling of residual feed intake using physical activity and methane production as energy sinks. Journal of Dairy Science, 103(8), 6967-6981. https://doi.org/10.3168/jds.2019-17489

Nielsen, H. M. & Kargo, M. (2020). An endangered horse breed can be conserved by using optimum contribution selection and preselection of stallions. Acta Agriculturae Scandinavica, Section A - Animal Science, 69(1-2), 127-130. https://doi.org/10.1080/09064702.2020.1728370

Munksgaard, L., Weisbjerg, M. R., Henriksen, J. C. S. & Løvendahl, P. (2020). Changes to steps, lying, and eating behavior during lactation in Jersey and Holstein cows and the relationship to feed intake, yield, and weight. Journal of Dairy Science, 103(5), 4643-4653. https://doi.org/10.3168/jds.2019-17565

Morgante, F., Huang, W., Sørensen, P., Maltecca, C. & Mackay, T. F. C. (2020). Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits. G3 (Bethesda, Md.), 10(12), 4599-4613. https://doi.org/10.1534/g3.120.401847

Mao, X., Sahana, G., Johansson, A. M., Liu, A., Ismael, A., Løvendahl, P., De Koning, D-J. & Guldbrandtsen, B. (2020). Genome-wide association mapping for dominance effects in female fertility using real and simulated data from Danish Holstein cattle. Scientific Reports, 10, [2953]. https://doi.org/10.1038/s41598-020-59788-5

Manzanilla-Pech, C. I. V., Gordo, D., Difford, G. F., Løvendahl, P. & Lassen, J. (2020). Multitrait genomic prediction of methane emissions in Danish Holstein cattle. Journal of Dairy Science, 103(10), 9195-9206. https://doi.org/10.3168/jds.2019-17857

Mahmood, K., Orabi, J., Kristensen, P. S., Sarup, P., Jørgensen, L. N. & Jahoor, A. (2020). De novo transcriptome assembly, functional annotation, and expression profiling of rye (Secale cereale L.) hybrids inoculated with ergot (Claviceps purpurea). Scientific Reports, 10(1), [13475]. https://doi.org/10.1038/s41598-020-70406-2

Madsen, M. D., Villumsen, T. M., Hansen, B. K., Møller, S. H., Jensen, J. & Shirali, M. (2020). Combined analysis of group recorded feed intake and individually recorded body weight and litter size in mink. Animal : an international journal of animal bioscience, 14(9), 1793-1801. https://doi.org/10.1017/S1751731120000762

Macedo, F. L., Christensen, O. F., Astruc, J-M., Aguilar, I., Masuda, Y. & Legarra, A. (2020). Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups. Genetics, selection, evolution : GSE, 52(1), [47]. https://doi.org/10.1186/s12711-020-00567-1

Liu, T., Luo, C., Ma, J., Wang, Y., Shu, D., Su, G. & Qu, H. (2020). High-Throughput Sequencing With the Preselection of Markers Is a Good Alternative to SNP Chips for Genomic Prediction in Broilers. Frontiers in Genetics, 11, [108]. https://doi.org/10.3389/fgene.2020.00108

Liu, A., Lund, M. S., Boichard, D., Mao, X., Karaman, E., Fritz, S., Aamand, G. P., Wang, Y. & Su, G. (2020). Imputation for sequencing variants preselected to a customized low-density chip. Scientific Reports, 10, [9524]. https://doi.org/10.1038/s41598-020-66523-7

Liu, A., Lund, M. S., Boichard, D., Karaman, E., Guldbrandtsen, B., Fritz, S., Aamand, G. P., Nielsen, U. S., Sahana, G., Wang, Y. & Su, G. (2020). Weighted single-step genomic best linear unbiased prediction integrating variants selected from sequencing data by association and bioinformatics analyses. Genetics Selection Evolution, 52(1), [48]. https://doi.org/10.1186/s12711-020-00568-0

Li, J., Gao, H., Madsen, P., Li, R., Liu, W., Bao, P., Xue, G., Gao, Y., Di, X. & Su, G. (2020). Impact of the Order of Legendre Polynomials in Random Regression Model on Genetic Evaluation for Milk Yield in Dairy Cattle Population. Frontiers in Genetics, 11. https://doi.org/10.3389/fgene.2020.586155

Larsen, F., Guldbrandtsen, B., Christensen, D., Pitcovski, J., Kjærup, R. B. & Dalgaard, T. S. (2020). Pustulan activates chicken bone marrow-derived dendritic cells in vitro and promotes ex vivo CD4⁺ T cell recall response to infectious bronchitis virus. Vaccines, 8(2), [226]. https://doi.org/10.3390/vaccines8020226

Karaman, E., Su, G., Croue, I. & Lund, M. S. (2020). Genomic prediction using purebred and crossbred individuals. GenTORE Newsletter, (4), 13-16. https://www.gentore.eu/uploads/1/0/7/4/107437499/gentore_newsletter.pdf

Karaman, E., Lund, M. S. & Su, G. (2020). Multi-trait single-step genomic prediction accounting for heterogeneous (co)variances over the genome. Heredity, 124(2), 274-287. https://doi.org/10.1038/s41437-019-0273-4

Islam, M. S., Jensen, J., Løvendahl, P., Karlskov-Mortensen, P. & Shirali, M. (2020). Bayesian estimation of genetic variance and response to selection on linear or ratio traits of feed efficiency in dairy cattle. Journal of Dairy Science, 103(10), 9150-9166. https://doi.org/10.3168/jds.2019-17137

Guo, X., Sarup, P. M., Jensen, J. D., Jihad, O., Kristensen, N. H., Mulder, F. A. A., Jahoor, A. & Jensen, J. (2020). Genetic Variance of Metabolomic Features and Their Relationship With Malting Quality Traits in Spring Barley. Frontiers in Plant Science, 11, [575467]. https://doi.org/10.3389/fpls.2020.575467

Guo, X., Svane, S. F., Füchtbauer, W. S., Andersen, J. R., Jensen, J. & Thorup-Kristensen, K. (2020). Genomic prediction of yield and root development in wheat under changing water availability. Plant Methods, 16, [90]. https://doi.org/10.1186/s13007-020-00634-0

Guldbrandtsen, B., Nielsen, V. H. & Schönherz, A. A. (2020). Genomic assessment of suitability of pigs for inclusion in the Pied Danish Pig conservation program – A case study. Acta Agriculturae Scandinavica, Section A - Animal Science, 69(1-2), 95-100. https://doi.org/10.1080/09064702.2020.1732455

Gebreyesus, G., Sahana, G., Christian Sørensen, A., Lund, M. S. & Su, G. (2020). Novel approach to incorporate information about recessive lethal genes increases the accuracy of genomic prediction for mortality traits. Heredity, 125, 155-166. https://doi.org/10.1038/s41437-020-0329-5

Gebreyesus, G., Difford, G. F., Buitenhuis, B., Lassen, J., Noel, S. J., Højberg, O., Plichta, D. R., Zhu, Z., Poulsen, N. A., Sundekilde, U. K., Løvendahl, P. & Sahana, G. (2020). Predictive ability of host genetics and rumen microbiome for subclinical ketosis. Journal of Dairy Science, 103(5), 4557-4569. https://doi.org/10.3168/jds.2019-17824

Gebregiwergis, G. T., Sørensen, A. C., Henryon, M. & Meuwissen, T. (2020). Controlling Coancestry and Thereby Future Inbreeding by Optimum-Contribution Selection Using Alternative Genomic-Relationship Matrices. Frontiers in Genetics, 11, [345]. https://doi.org/10.3389/fgene.2020.00345

Gautason, E., Schonherz, A. A., Sahana, G. & Guldbrandtsen, B. (2020). Relationship of Icelandic cattle with Northern and Western European cattle breeds, admixture and population structure. Acta Agriculturae Scandinavica, Section A - Animal Science, 69(1-2), 25-38. https://doi.org/10.1080/09064702.2019.1699951

Gan, Q. F., Li, Y. R., Liu, Q. H., Lund, M., Su, G. S. & Liang, X. W. (2020). Genome-wide association studies for the concentrations of insulin, triiodothyronine, and thyroxine in Chinese Holstein cattle. Tropical Animal Health and Production, 52(4), 1655-1660. https://doi.org/10.1007/s11250-019-02170-z

Eydivandi, S., Sahana, G., Momen, M., Moradi, M. H. & Schönherz, A. A. (2020). Genetic diversity in Iranian indigenous sheep vis-à-vis selected exogenous sheep breeds and wild mouflon. Animal Genetics, 51(5), 772-787. https://doi.org/10.1111/age.12985

Esfandyari, H., Fè, D., Tessema, B. B., Janss, L. L. & Jensen, J. (2020). Effects of different strategies for exploiting genomic selection in perennial ryegrass breeding programs. G3: Genes, Genomes, Genetics, 10(10), 3783-3795. https://doi.org/10.1534/g3.120.401382

Difford, G. F., Løvendahl, P., Veerkamp, R. F., Bovenhuis, H., Visker, M. H. P. W., Lassen, J. & de Haas, Y. (2020). Can greenhouse gases in breath be used to genetically improve feed efficiency of dairy cows? Journal of Dairy Science, 103(3), 2442-2459. https://doi.org/10.3168/jds.2019-16966

Dettmann, F., Warner, D., Buitenhuis, B., Kargo, M., Kjeldsen, A. M. H., Nielsen, N. H., Lefebvre, D. M. & Santschi, D. E. (2020). Fatty Acid Profiles from Routine Milk Recording as a Decision Tool for Body Weight Change of Dairy Cows after Calving. Animals, 10(11), [1958]. https://doi.org/10.3390/ani10111958

Davis, R. B., Norberg, E. & Fogh, A. (2020). Estimation of genetic parameters for young stock survival in beef x dairy crossbred calves. Animal, 14(3), 445-451. [1751731119002386]. https://doi.org/10.1017/S1751731119002386

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