Publications

Peer-reviewed publications at QGG

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Løvendahl, P. & Weisbjerg, M. R. (2017). Lactose in milk - How can lactose concentration data be beneficial in management and breeding?. 99-104. Abstract from ICAR 2017, Edinburgh, United Kingdom.

Shirali, M., Varley, P. F. & Jensen, J. (2017). Longitudinal genetic dissection of feed efficiency and feeding behaviour in MaxGro pigs. Livestock Science, 199, 79-85. https://doi.org/10.1016/j.livsci.2017.03.017

Hjortø, L., Thomasen, J. R., Berg, P., Kargo, M., Henryon, M., Liu, H. & Sørensen, A. C. (2017). Managing lethal alleles using genomic optimum contribution selection. Abstract from EAAP, Tallin, Estonia.

Garcia-Baccino, C. A., Legarra, A., Christensen, O. F., Misztal, I., Pocrnic, I., Vitezica, Z. G. & Cantet, R. J. C. (2017). Metafounders are related to F_st fixation indices and reduce bias in single-step genomic evaluations. Genetics Selection Evolution, 49(1), 1-14. [34]. https://doi.org/10.1186/s12711-017-0309-2

Szalanski, M., Kristensen, T., Difford, G., Løvendahl, P. & Lassen, J. (2017). Methane emission in Jersey cows during spring transition from in-door feeding to grazing. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (2017 ed., Vol. 23, pp. 148-148). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Wang, H-M., Shi, L., Liang, T., Wang, B., Wu, W. J., Su, G., Wei, J., Li, P. & Huang, R. (2017). MiR-696 regulates C2C12 cell proliferation and differentiation by targeting CNTFRα. International Journal of Biological Sciences, 13(4), 413-425. https://doi.org/10.7150/ijbs.17508

Gebreyesus, G., Lund, M. S., Buitenhuis, A. J., Bovenhuis, H., Poulsen, N. A. & Janss, L. (2017). Modeling heterogeneous (co)variances from adjacent-SNP groups improves genomic prediction for milk protein composition traits. Genetics Selection Evolution, 49, [89]. https://doi.org/10.1186/s12711-017-0364-8

Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2017). Multi-population GWAS for the de novo synthesis of milk fatty acids. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.

Sørensen, I. F., Edwards, S. M., Rohde, P. D. & Sørensen, P. (2017). Multiple Trait Covariance Association Test Identifies Gene Ontology Categories Associated with Chill Coma Recovery Time in Drosophila melanogaster /631/208/721 /631/208/721 /631/208/729/743 /631/208/729/743 /119 /45 /45/43 article. Scientific Reports, 7(1), [2413]. https://doi.org/10.1038/s41598-017-02281-3

Li, B., Berglund, B., Fikse, W. F., Lassen, J., Lidauer, M. H., Mäntysaari, P. & Løvendahl, P. (2017). Neglect of lactation stage leads to naive assessment of residual feed intake in dairy cattle. Journal of Dairy Science, 100(11), 9076-9084. https://doi.org/10.3168/jds.2017-12775

Poulsen, N. A., Gregersen, V. R., Maciel, G. D. M., Madsen, L. B., Buitenhuis, A. J., Stenholt Hansen, M., Bendixen, C. & Larsen, L. B. (2017). Novel genetic variation associated to CSN3 strongly affects rennet-induced milk coagulation. International Dairy Journal, 71, 122-130. https://doi.org/10.1016/j.idairyj.2017.03.012

Michalak, P., Kang, L., Sarup, P. M., Schou, M. F. & Loeschcke, V. (2017). Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster. BMC Genomics, 18(1), 84. https://doi.org/10.1186/s12864-017-3485-0

Cericola, F., Jahoor, A., Orabi, J., Andersen, J. R., Janss, L. L. & Jensen, J. (2017). Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines. P L o S One, 12(1), e0169606. https://doi.org/10.1371/journal.pone.0169606

Gregersen, V. R., Sørensen, E. S., S. Christiansen, B., Buitenhuis, A. J., Poulsen, N. A., Holm, L-E., Stenholt Hansen, M., Larsen, L. B. & Thomsen, B. (2017). Osteopontin and its relation to transcription of the major milk proteins. Abstract from 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.

Gregersen, V. R., Sørensen, E. S., S. Christiansen, B., Buitenhuis, A. J., Poulsen, N. A., Holm, L-E., Stenholt Hansen, M., Larsen, L. B. & Thomsen, B. (2017). Osteopontin and its relation to transcription of the major milk proteins. Poster session presented at 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.

Thomasen, J. R., Liu, H. & Sørensen, A. C. (2017). Pedigree inbreeding underestimate true inbreeding in genomic dairy cattle breeding schemes. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.

Chung, N. C., Szyda, J., Frąszczak, M., Fries, H. R., Lund, M. S., Guldbrandtsen, B., Boichard, D. A., Stothard, P., Veerkamp, R., Goddard, M., Van Tassell, C. P. & Hayes, B. (2017). Population Structure Analysis of Bull Genomes of European and Western Ancestry. Scientific Reports, 7, [40688]. https://doi.org/10.1038/srep40688

Chen, M., Su, G., Fu, J., Zhang, Q., Wang, A., Sandø Lund, M. & Guldbrandtsen, B. (2017). Population admixture in Chinese and European Sus scrofa. Scientific Reports, 7(1), [13178]. https://doi.org/10.1038/s41598-017-13127-3

Shetty, N., Difford, G., Lassen, J., Løvendahl, P. & Buitenhuis, A. J. (2017). Predicting methane emissions of lactating Danish Holstein cows using Fourier transform mid-infrared spectroscopy of milk. Journal of Dairy Science, 100(11), 9052-9060. https://doi.org/10.3168/jds.2017-13014

Younesi, N., Shariati, M., Zerehdaran, S., Noghabi, M. J. & Løvendahl, P. (2017). Quantile regression mixed model at different milk production levels of Iranian Holsteins. Abstract from EAAP, Tallin, Estonia.

Salleh, S. M., Mazzoni, G., Höglund, J. K., Olijhoek, D. W., Lund, P., Løvendahl, P. & Kadarmideen, H. N. (2017). RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle. B M C Genomics, 18(1), [258]. https://doi.org/10.1186/s12864-017-3622-9

Fogsgaard, K. K., Munksgaard, L. & Norberg, E., (2017). Redegørelse vedrørende kupering af lammehaler – smertepåvirkning, No. 2017-760-000196, 4 p., Dec 14, 2017.

Munksgaard, L., Schmidt Henriksen, J. C., Weisbjerg, M. R. & Løvendahl, P. (2017). Relationship between daily lying time and weight during lactation in Holstein and Jersey cows. In M. B. Jensen, M. S. Herskin & J. Malmkvist (Eds.), Proceedings of the 51st Congress of the International Society for Applied Ethology: Understanding animal behaviour (pp. 121-121). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-858-2

Emamgholi Begli, H., Vaez Torshizi, R., Akbar Masoudi, A., Ehsani, A. & Jensen, J. (2017). Relationship between residual feed intake and carcass composition, meat quality and size of small intestine in a population of F₂ chickens. Livestock Science, 205, 10-15. https://doi.org/10.1016/j.livsci.2017.09.001

Esfandyari, H., Henryon, M., Berg, P., Thomasen, J. R., Bjima, P. & Sørensen, A. C. (2017). Response to selection in finite locus models with non-additive effects. Journal of Heredity, 108(3), 318-327. https://doi.org/10.1093/jhered/esw123

Clasen, J. B., Lehmann, J. O., Thomasen, J. R., Østergaard, S. & Kargo, M. (2017). Sexed semen counteracts the increase in the genetic lag in dairy herds managed for extended lactation. In Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (2017 ed., Vol. 23, pp. 255-255). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-859-9

Slagboom, M., Wallenbeck, A., Hjortø, L., Sørensen, A. C., Thomasen, J. R. & Kargo, M. (2017). Simulating consequences of choosing a breeding goal for organic dairy cattle production. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.

Welderufael, B. G., de Koning, D. J., Janss, L. L. G., Franzén, J. & Fikse, W. F. (2017). Simultaneous genetic evaluation of simulated mastitis susceptibility and recovery ability using a bivariate threshold sire model. Acta Agriculturae Scandinavica, Section A - Animal Science, 66(3), 125-134. https://doi.org/10.1080/09064702.2016.1275761

Tessema, B. B., Liu, H., Andersen, J. R. & Jensen, J. (2017). Stochastic Simulation of Selective Breeding Schemes for Wheat. Poster session presented at PAG 2017, San Diego, United States.

Xiang, T., Christensen, O. F. & Legarra, A. (2017). Technical note: Genomic evaluation for crossbred performance in a single-step approach with metafounders. Journal of Animal Science, 95(4), 1472-1480. https://doi.org/10.2527/jas2016.1155

Persson, J., Lauritsen, U., Hansen, L. F. & Løvendahl, P. (2017). Test day milk yield and composition records are affected by deviations in milking intervals in overly simplified recording schemes. Abstract from ICAR 2017, United Kingdom. http://www.icar.org/Documents/Puerto%20Varas%202016%20Abstracts/files/TS/TS%205/RDY/ICAR%202016%20TS-5.%20Test%20day%20milk%20yield%20and%20composition%20records_Persson_Lauritsen_Fast_Lovendahl.pdf

Mebratie, W., Shirali, M., Madsen, P., Sapp, R. L., Hawken, R. & Jensen, J. (2017). The effect of selection and sex on genetic parameters of body weight at different ages in a commercial broiler chicken population. Livestock Science, 204, 78-87. https://doi.org/10.1016/j.livsci.2017.08.013

Miglior, F., Baes, C. B., Canovas, A., Coffey, M., Connor, E. E., De Pauw, M., Gredler, B., Goddard, E., Hailu, G., Lassen, J., Amer, P., Osborne, V., Pryce, J., Sargolzaei, M., Schenkel, F. S., Wall, E., Wang, Z., Wright, T. & Stothard, P. (2017). The efficient dairy genome project: environmental stewardship through genomic selection. 376. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.

Buitenhuis, A. J., Kargo, M. & Munk, A. (2017, Jan 13). The fatty acid profile of the milk is measured on all cows in Denmark: Analysis of milk samples shows a large genetic variation, which opens up the possibility to change the fatty acid profile of the cow by genetic selection. http://icrofs.dk/en/aktuelt/nyheder/viewnews/artikel/the-fatty-acid-profile-of-the-milk-is-measured-on-all-cows-in-denmark/

Cai, Z., Petersen, B., Sahana, G., Madsen, L. B., Larsen, K., Thomsen, B., Bendixen, C., Lund, M. S., Guldbrandtsen, B. & Panitz, F. (2017). The first draft reference genome of the American mink (Neovison vison). Scientific Reports, 7(1), [14564]. https://doi.org/10.1038/s41598-017-15169-z

Sørensen, P., Otieno, T. O. & Buitenhuis, A. J. (2017). The motivation of hens to lay eggs on the floor in non-cage systems has a heritable background. European Poultry Science (EPS) / Archiv für Geflügelkunde, 81. https://doi.org/10.1399/eps.2017.192

Li, X., Lund, M. S., Janss, L., Wang, C., Ding, X., Zhang, Q. & Su, G. (2017). The patterns of genomic variances and covariances across genome for milk production traits between Chinese and Nordic Holstein populations. BMC Genetics, 18, [26]. https://doi.org/10.1186/s12863-017-0491-9

Fang, L., Sahana, G., Ma, P., Su, G., Yu, Y., Zhang, S., Lund, M. S. & Sørensen, P. (2017). Use of biological priors enhances understanding of genetic architecture and genomic prediction of complex traits within and between dairy cattle breeds. B M C Genomics, 18, 604. https://doi.org/10.1186/s12864-017-4004-z

Younesi, N., Shariati, M., Zerehdaran, S., Noghabi, M. J. & Løvendahl, P. (2017). Using nonlinear quantile regression to describe the milk somatic cell count of Iranian Holstein cows. 262. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.

Liu, A., Lund, M. S., Wang, Y., Guo, G., Dong, G., Madsen, P. & Su, G. (2017). Variance components and correlations of female fertility traits in Chinese Holstein population. Journal of Animal Science and Biotechnology, 8(1), [56]. https://doi.org/10.1186/s40104-017-0189-x

Munk, A., Buitenhuis, A. J. & Kargo, M. (2017). Viden om mælkens fedtsyreindhold giver nye muligheder. Oekologi & Erhverv, 604, 15. http://okologi.dk/oekologi-og-erhverv/nyheder/2017/02/oekologi-forskning-oekologi-erhverv-nr-604

Karaman, E., Lund, M. S., Anche, M. T., Janss, L. & Su, G. (2017). Weighted Multi-Trait GBLUP: Using (co)variance estimates from Bayesian models. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.

Khatun, M., Jorgensen, H. B. H., Ehsani, A., Lund, M. S., Sahana, G., Sorensen, P. & Rontved, C. M. (2017). Whole blood optimization and genetic association of ex vivo TNF-alpha responsiveness to killed E-coli in Danish Holstein cows. Livestock Science, 201, 92-98. https://doi.org/10.1016/j.livsci.2017.04.014

Guldbrandtsen, B., Mullaart, E., Fritz, S., De Roo, S., Aamand, G. P., David, X., Jimenez, J. A., Alkhoder, H., Liu, Z., Schrooten, C. & Zukowski, K. (2017). Wide-spread adoption of customized genotyping improves European cattle breeding. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.

Esfandyari, H. & Sørensen, A. C. (2017, Apr 3). xbreed: An R package for genomic simulation of purebred and crossbred populations. https://cran.r-project.org/web/packages/xbreed/index.html

Esfandyari, H. & Sørensen, A. C. (2017). xbreed: an R package for genomic simulation of purebreds and crossbreds. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.

Sahana, G., Iso-Touru, T., Wu, X., Nielsen, U., de Koning, D-J., Lund, M. S., Vilkki, J. & Guldbrandtsen, B. (2016). A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle. Genetics Selection Evolution, 48, [35]. https://doi.org/10.1186/s12711-016-0215-z

Rohde, P. D., Krag, K., Loeschcke, V., Overgaard, J., Sørensen, P. & Kristensen, T. N. (2016). A Quantitative Genomic Approach for Analysis of Fitness and Stress Related Traits in a Drosophila melanogaster Model Population. International Journal of Genomics, 1-11. [2157494]. https://doi.org/10.1155/2016/2157494

Fè, D., Ashraf, B. H., Pedersen, M. G., Janss, L., Byrne, S., Roulund, N., Lenk, I., Didion, T., Asp, T., Jensen, C. S. & Jensen, J. (2016). Accuracy of genomic prediction in a commercial perennial ryegrass breeding program. Plant Genome, 9(3). https://doi.org/10.3835/plantgenome2015.11.0110

Rovere, G., Ducro, B. J., van Arendonk, J. A. M., Norberg, E. & Madsen, P. (2016). Analysis of competition performance in dressage and show jumping of Dutch Warmblood horses. Journal of Animal Breeding and Genetics, 133(6), 503-512. https://doi.org/10.1111/jbg.12221

Xiang, T., Nielsen, B., Su, G., Legarra, A. & Christensen, O. F. (2016). Application of single-step genomic evaluation for crossbred performance in pig. Journal of Animal Science, 94(3), 936-948. https://doi.org/10.2527/jas.2015-9930

Wu, X., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2016). Association analysis for feet and legs disorders with whole-genome sequence variants in 3 dairy cattle breeds. Journal of Dairy Science, 99(9), 7221–7231. https://doi.org/10.3168/jds.2015-10705

Bengtsson, C., Fogh, A. & Kargo, M. (2016). Avlsindekset for persistens har begrænset information om ydelsen i sen laktation. Ny KvægForskning, (5), 7-8.

Østergaard, S., Ettema, J. F., Hjortø, L., Pedersen, J., Lassen, J. & Kargo, M. (2016). Avoiding double counting when deriving economic values through stochastic dairy herd simulation. Livestock Science, 187, 114-124. https://doi.org/10.1016/j.livsci.2016.03.004

Løvendahl, P., Strandberg, E. & Ismael, A. I. S. (2016). BIG DATA may be useful to dairy herd managers - after washing and drying. Abstract from Fourth Dairycare Conference, Lissabon, Portugal.

Shirali, M., Varley, P. F. & Jensen, J. (2016). Bayesian analysis of selection response on linear or ratio feed efficiency traits in pigs. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

Thodberg, K., Sørensen, L. U., Videbech, P. B., Haun Poulsen, P., Houbak, B., Damgaard, V., Keseler, I., Edwards, D. & Christensen, J. W. (2016). Behavioral Responses of Nursing Home Residents to Visits From a Person with a Dog,a Robot Seal or a Toy Cat. Anthrozoos, 29(1), 107-121. https://doi.org/10.1080/08927936.2015.1089011

Thodberg, K., Sørensen, L. U., Videbech, P. B., Haun Poulsen, P., Houbak, B., Damgaard, V., Keseler, I., Edwards, D. & Christensen, J. W. (2016). Behaviour of nursing home residents towards a visiting animal and the human companion - A randomized controlled trial in 4 Danish nursing homes. In M. B. Jensen, K. Thodberg & J. W. Christensen (Eds.), Nordic ISAE 2016: Proceedings of the 26th Nordic Regional Symposium of the International Society for Applied Ethology (January 2016 ed., Vol. DCA Report No. 070, pp. 27-27). http://web.agrsci.dk/djfpublikation/djfpdf/DCArapport070.pdf

Steffensen, S., Pedersen, H., Adhikari, K., Laursen, B., Jensen, C., Høyer, S., Borre, M., Pedersen, H. H., Borre, M., Edwards, D. & Fomsgaard, I. S. (2016). Benzoxazinoids in Prostate Cancer Patients after a Rye-Intensive Diet: Methods and Initial Results. Journal of Agricultural and Food Chemistry, 64(43), 8235-8245. https://doi.org/10.1021/acs.jafc.6b03765

Guldbrandtsen, B., (2016). Bestemmelse af tilhørsforhold af dyr til Sortbroget Landsvin, No. 2234410, 8 p., Aug 27, 2016.

Wang, L., Madsen, P., Sapp, R., Henshall, J., Hawken, R., Alemu, S. W., Sørensen, A. C. & Jensen, J. (2016). Bias due to selective genotyping in genomic prediction using H-BLUP. Poster session presented at XXV World's Poultry Congress (WPC2016), Beijing, China.

Wang, L., Madsen, P., Sapp, R., Henshall, J., Hawken, R., Alemu, S. W., Sørensen, A. C. & Jensen, J. (2016). Bias due to selective genotyping in genomic prediction using H-BLUP. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.

Ulrich-Lynge, S. L., Juul-Madsen, H. R., Kjærup, R. B., Okimoto, R., Abrahamsen, M., Maurischat, S., Sørensen, P. & Dalgaard, T. S. (2016). Broilers with low serum Mannose-binding Lectin show increased faecal shedding of Salmonella enterica serovar Montevideo. Poultry Science, 95(8), 1779-1786. https://doi.org/10.3382/ps/pew101

Zhu, Z., Noel, S. J., Difford, G., Al-Soud, W. A., Brejnrod, A. D., Sørensen, S. J., Lassen, J., Løvendahl, P. & Højberg, O. (2016). Community structure of rumen metabolically active bacterial and archaeal communities in dairy cows over the transition period. Poster session presented at INRA - Rowett 2016, Clermont-Ferrand, France.

Difford, G., Lassen, J. & Løvendahl, P. (2016). Comparing equipment for recording enteric methane concentrations, carbon dioxide concentrations and their ratio in the breath of Danish Holsteins during automated milking. Abstract from 6th Greenhouse Gas and Animal Agriculture Conference, Melbourne, Australia.

Szalanski, M., Difford, G., Løvendahl, P. & Lassen, J. (2016). Comparing methods to analyse raw, large-scale methane data. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

van den Berg, I., Boichard, D. & Lund, M. S. (2016). Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds. Journal of Dairy Science, 99(11), 8932-8945. https://doi.org/10.3168/jds.2016-11073

Zhang, Q., Guldbrandtsen, B., Calus, M. P. L., Lund, M. S. & Sahana, G. (2016). Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships. Genetics Selection Evolution, 48, [60]. https://doi.org/10.1186/s12711-016-0238-5

Rohde, P. D., Demontis, D., Castro Dias Cuyabano, B., Børglum, A. & Sørensen, P. (2016). Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes. Genetics (Print), 203(4), 1901-1913. https://doi.org/10.1534/genetics.116.189498

Rohde, P. D., Demontis, D., Castro Dias Cuyabano, B., Børglum, A. & Sørensen, P. (2016). Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.

Rohde, P. D., Demontis, D., Castro Dias Cuyabano, B., Børglum, A. & Sørensen, P. (2016). Covariance Association Test (CVAT) Identifies Genetic Markers Associated with Schizophrenia in Functionally Associated Biological Processes. Poster session presented at 2nd Annual Danish Bioinformatics Conference, Odense, Denmark.

Ehsani, A., Janss, L., Pomp, D. & Sørensen, P. (2016). Decomposing genomic variances in a mouse F2 population using information from GWA, GWE and eQTL analyses. Animal Genetics, 47(2), 165-173. https://doi.org/10.1111/age.12396

Sørensen, A. C. (2016). Den perfekte øko-so forudsætter uafhængigt avlsarbejde. Oekologi & Erhverv, (584), 12. http://orgprints.org/29908/1/Sorensen_2016_avlsarbejde_svineproduktion.pdf

Hein, L., Buitenhuis, A. J., Gregersen, S. B., Larsen, L. B., Demirovic, D., Warnecke, S., Nielsen, N. H., Munk, A., Sørensen, L. P., Pedersen, J. & Kargo, M. (2016). Detailed milk fatty acid profiling of the Danish dairy cattle population. http://www.icar.org/Documents/Puerto%20Varas%202016%20Abstracts/files/TS/TS%203/RDY/ICAR%202016%20paper_FINAL%20Niels%20nielsen.pdf

Jardim, J. G., Sahana, G., Quirino, C., Peixoto, M., Santos, G. & Lund, M. S. (2016). Detection of QTL for mastitis resistance and related functional traits in Bos Taurus and Bos indicus. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

Bertelsen, H. P., Gregersen, V. R., Poulsen, N. A., Nielsen, R. O., Das, A., Madsen, L. B., Buitenhuis, A. J., Holm, L-E., Panitz, F., Larsen, L. B. & Bendixen, C. (2016). Detection of genetic variation affecting milk coagulation properties in Danish Holstein dairy cattle by analyses of pooled whole-genome sequences from phenotypically extreme samples (pool-seq). Journal of Animal Science, 94(4), 1365-1376. https://doi.org/10.2527/jas.2015-9884

Salleh, S. M., Mazzoni, G., Höglund, J., Olijhoek, D., Lund, P., Løvendahl, P. & Kadarmideen, H. (2016). Differential Expression of Genes between High and Low Feed Efficiency in Holstein and Jersey Cattle. Abstract from PAG ASIA 2016, Singapore.

Marete, A. G., Lund, M. S. & Boichard, D. A. (2016). Dissecting dairy complex traits beyond additive effects using genetic markers. Abstract from 19 thSéminaire des thésards du Département de Génétique Animale, Toulouse, France.

Marete, A. G., Lund, M. S. & Boichard, D. A. (2016). Dissecting dairy complex traits using genetic markers: combining GWASand functional pathways. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.

Groeneveld, L. F., Gregusson, S., Guldbrandtsen, B., Hiemstra, S. J., Hveem, K., Kantanen, J., Lohi, H., Stroemstedt, L. & Berg, P. (2016). Domesticated Animal Biobanking: Land of Opportunity. PLoS Biology, 14(7), [e1002523]. https://doi.org/10.1371/journal.pbio.1002523

Shirali, M., Varley, P. F. & Jensen, J. (2016). ECO FCE: Value of RFI vs FCR in genetic selection programs. In ook of AbsBook of abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

Sarup, P. M., Jensen, J., Shirali, M., Ostersen, T., H, R., Varley, P. & Sørensen, P. (2016). ECO-FCE: Integrative genomic models for FCE in monogastries. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

Noel, S. J., Olijhoek, D., Lassen, J., Løvendahl, P., Lund, P. & Højberg, O. (2016). Effect of dietary concentrate on rumen fermentation, methane production and the archaeal community of different breeds and feed efficency. Poster session presented at INRA - Rowett 2016, Clermont-Ferrand, France.

Noel, S. J., McLean, F., Olijhoek, D., Lassen, J., Løvendahl, P., Lund, P. & Højberg, O. (2016). Effects of dietary concentrate on rumen fermentation, methane production and the archaeal community in dairy cows of different breeds and feed efficiencies. In Proceedings: Gut Microbiology - 20 Years & counting. 10th INRA-Rowett Symposium (pp. 139-139).

Bovenhuis, H., Visker, M. H. P. W., Poulsen, N. A., Sehested, J., van Valenberg, H. J. F., van Arendonk, J. A. M., Larsen, L. B. & Buitenhuis, A. J. (2016). Effects of the diacylglycerol o-acyltransferase 1 (DGAT1) K232A polymorphism on fatty acid, protein, and mineral composition of dairy cattle milk. Journal of Dairy Science, 99(4), 3113-3123. https://doi.org/10.3168/jds.2015-10462

Ashraf, B. H., Byrne, S., Fé, D., Czaban, A., Asp, T., Pedersen, M. G., Lenk, I., Roulund, N., Didion, T., Jensen, C. S., Jensen, J. & Janss, L. L. (2016). Estimating genomic heritabilities at the level of family-pool samples of perennial ryegrass using genotyping-by-sequencing. Theoretical and Applied Genetics, 129(1), 45-52. https://doi.org/10.1007/s00122-015-2607-9

Buitenhuis, A. J., Poulsen, N. A., Gebreyesus, G. & Larsen, L. B. (2016). Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle. BMC Genetics, 17, [114]. https://doi.org/10.1186/s12863-016-0421-2

Jensen, J. (2016). Estimation of genetic variance in the age of genomics. Journal of Animal Breeding and Genetics, 133(5), 333. https://doi.org/10.1111/jbg.12235

Alemu, S. W., Berg, P., Janss, L. & Bijma, P. (2016). Estimation of indirect genetic effects in group-housed mink (Neovison vison) should account for systematic interactions either due to kin or sex. Journal of Animal Breeding and Genetics, 133(1), 43-50. https://doi.org/10.1111/jbg.12163

Kargo, M., Buitenhuis, A. J. & Munk, A. (2016). Fedtsyreprofilen i mælk fra malkekøer - potentiale og perspektiver. DCA - Nationalt Center for Fødevarer og Jordbrug,. DCA rapport No. 088

Zetouni, L., Kargo, M. & Lassen, J. (2016). Fertility and health traits correlations with methane emissions. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

Gebreyesus, G., Lund, M. S., Janss, L., Bovenhuis, H. & Buitenhuis, A. J. (2016). Fine mapping and genomic prediction for detailed milk protein composition. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.

Mao, X., Kadri, N. K., Thomasen, J. R., de Koning, D. J., Sahana, G. & Guldbrandtsen, B. (2016). Fine mapping of a calving QTL on Bos taurus autosome 18 in Holstein cattle. Journal of Animal Breeding and Genetics, 133(3), 207-218. https://doi.org/10.1111/jbg.12187

Gregersen, V. R., Madsen, L. B., Poulsen, N. A., Thomsen, B., Panitz, F., Stenholt Hansen, M., Buitenhuis, A. J., Holm, L-E., Larsen, L. B. & Bendixen, C. (2016). Fine mapping of a quantitative trait locus. Abstract from 2nd Annual Danish Bioinformatics Conference, Odense, Denmark.

Gregersen, V. R., Madsen, L. B., Poulsen, N. A., Thomsen, B., Panitz, F., Stenholt Hansen, M., Buitenhuis, A. J., Holm, L-E., Larsen, L. B. & Bendixen, C. (2016). Fine mapping of a quantitative trait locus. Poster session presented at 2nd Annual Danish Bioinformatics Conference, Odense, Denmark.

Løvendahl, P. & Sorensen, L. P. (2016). Frequently recorded sensor data may correctly provide health status of cows if data are handled carefully and errors are filtered away. Biotechnologie, Agronomie, Société et Environnement, 20(1), 3-12. http://popups.ulg.ac.be/1780-4507/index.php?id=12562

Szekeres, B. D., Schönherz, A., Nielsen, V. H. & Guldbrandtsen, B. (2016). Gamle danske husdyrracers genomer - Racernes oprindelse og slægtskab. DCA - Nationalt Center for Fødevarer og Jordbrug,. DCA rapport No. 082

Difford, G., Lassen, J. & Løvendahl, P. (2016). Genes and microbes, the next step in dairy cattle breeding. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. Book of Abstracts of the Annual EAAP Meeting Vol. 22 https://doi.org/10.3920/978-90-8686-830-8

Difford, G., Lassen, J. & Løvendahl, P. (2016). Genes and microbes, the next step in dairy cattle breeding. In Book of Abstracts of the 67th Annual Meeting of the European Federation of Animal Science: EAAP 2016, 67th Annual Meeting of the European Federation of Animal Science, Belfast UK, 29 Aug – 2 Sept 2016 (Vol. 22, pp. 285)

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Jette Odgaard Villemoes