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Center for Quantitative Genetics and Genomics

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Peer-reviewed publications at QGG

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Gianola, D. & Sorensen, D. (2004). Structural equation models for quantitative genetic analysis. In Book of Abstracts (pp. 89)

Custódio, T. F., Paulsen, P. A., Frain, K. M. & Pedersen, B. P. (2021). Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family. Life Science Alliance, 4(4), Article e202000858. https://doi.org/10.26508/LSA.202000858

Ørsted, M., Hoffmann, A. A., Rohde, P. D., Sørensen, P. & Kristensen, T. N. (2019). Strong impact of thermal environment on the quantitative genetic basis of a key stress tolerance trait. Heredity, 122(3), 315-325. https://doi.org/10.1038/s41437-018-0117-7

Overgaard, J., Sørensen, J. G., A. Hoffmann, A., Loeschcke, V. & Kristensen, T. N. (2008). Costs and benefits of cold acclimation in field released Drosophila – Associating laboratory and field results. . Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, S171-S172. https://doi.org/10.1016/j.cbpa.2008.04.455

Kristensen, T. N. (2008). Stress kan påvirke artens overlevelse. Det Jordbrugsvidenskabelige Fakultet - Nyhedsbrev. http://www.agrsci.dk/ny_navigation/nyheder/nyheder/stress_kan_paavirke_artens_overlevelse

Pribenszky, C., Vajta, G., Molnár, M., Du, Y., Lin, L., Bolund, L. & Yovich, J. (2010). Stress for Stress Tolerance? A Fundamentally New Approach in Mammalian Embryology. Biology of Reproduction, 83(5), 690-697. https://doi.org/10.1095/biolreprod.110.083386

Kristensen, T. N. (2003). Stress, chaperoner og SDM-Dansk Holstein. Sortbroget Kvæg, 4, 41-43.

Mesbah-Uddin, M., Guldbrandtsen, B., Capitan, A., Lund, M. S., Boichard, D. & Sahana, G. (2020). Strategy to imputation of large genomic deletions and utilizing them in mapping and genomic prediction in cattle. Abstract from 6th International Conference of Quantitative Genetics, Brisbane, Australia. https://icqg6.org/wp-content/uploads/2020/11/ICQG6_2020_Abstract_Book.pdf

Madsen, P., Lidauer, M. H. & Mäntysaari, E. A. (2008). Strategy for estimation of variance components for the joint Nordic yield evaluation. In Proceedings of the 2008 Interbull Meeting (Vol. Bulletin No. 38, pp. 36-39)

Lund, M. S., Vilki, J., Andersson-Eklund, L., Williams, J. L., Janns, L., Fernandez, A., Viinalass, H., Sabry, A., Schulman, N., Hastings, N. & Eding, H. J. (2004). Strategy and statistical methods in fine mapping QTL affecting clinical mastitis and somatic cell count. In Proc. 9th Quantitative Trait Locus Mapping and Marker-Assisted Selection Workshop (pp. 27)

Tessema, B. B., Liu, H., Sørensen, A. C., Andersen, J. R. & Jensen, J. (2020). Strategies Using Genomic Selection to Increase Genetic Gain in Breeding Programs for Wheat. Frontiers in Genetics, 11, Article 578123. https://doi.org/10.3389/fgene.2020.578123

Ma, P., Su, G. & Lund, M. S. (2015). Strategies to reduce the bias of model reliability in genomic prediction. In Book of Abstract of the 66th Annual Meeting of the European Federation of Animal Science (Vol. 21, pp. 258-258). https://doi.org/10.3920/978-90-8686-816-2

Okeno, T. O., Henryon, M. & Sørensen, A. C. (2013). Strategies to determine the necessary number of phenotyped candidates in genomic selection. In Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production. 2013. (2013 ed., Vol. 19, pp. 320). Wageningen Academic Publishers. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Okeno, T. O., Henryon, M. & Sørensen, A. C. (2013). Strategies to determine the necessary number of phenotyped candidates in genomic selection. Poster session presented at 64th Annual Meeting of the European Association for Animal Production, Nantes, France. http://www.eaap.org/Previous_Annual_Meetings/2013Nantes/Nantes_2013_Abstracts.pdf

Thomasen, J. R. & Sørensen, A. C. (2014). Strategies for use of reproductive technologies in genomic dairy cattle breeding programs. Paper presented at 10th World Congress on Genetics Applied to Livestock Production (WCGALP), Vancouver, Canada. https://event.crowdcompass.com/wcgalp2014/activity/ku79hykUKe

Hansen, P. K., Kristoffersen, P. & Kristensen, K. (2003). Strategies for non-chemical weed control on public paved areas in Denmark. In Proceedings (pp. 75-76)

Hansen, P. K., Kristoffersen, P. & Kristensen, K. (2004). Strategies for non-chemical weed control on public paved areas in Denmark. Pest Management Science, 60(6), 600-604. https://doi.org/10.1002/ps.853

Waagepetersen, R., Ibanez, N. & Sorensen, D. (2006). Strategies for MCMC computation in quantitative genetics. In Book of abstracts: CD communication 26-01, 6 pp (pp. 239). WCGALP. http://www.wcgalp8.org.br/wcgalp8/articles/paper/26_585-828.pdf

Brøndum, R. F., Guldbrandtsen, B., Sahana, G., Lund, M. S. & Su, G. (2014). Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle. B M C Genomics, 15(728), 1-8. https://doi.org/10.1186/1471-2164-15-728

Poulsen, N. A., Jensen, H. B., Gregersen, V. R., Gustavsson, F., Glantz, M., Aae Eskildsen, C. E., Bertelsen, H. P., Løkke, M. M., Skov, T., de Moura Maciel, G., Bendixen, C., Paulsson, M., Buitenhuis, A. J. & Larsen, L. B. (2014). Strategies for improving milk coagulation properties. Abstract from 11th International Symposium on Milk Genomics and Human Health, Aarhus, Denmark. http://milkgenomics.org/11th-international-symposium-milk-genomics-human-health/

Boleckova, J., Christensen, O. F., Sørensen, P. & Sahana, G. (2012). Strategies for haplotype-based association mapping in complex pedigreed populations. Czech Journal of Animal Science, 57(1), 1-9. http://www.agriculturejournals.cz/web/cjas.htm?journal=CJAS&futureArticleId=83160539&type=futureArticleAbstract

Sørensen, P. & Nøddegaard, F. (2002). Strategier for opdrætning af hønniker til produktion af rugeæg. In Fra rugeæg til slagtekylling (pp. 7-17)

Kjær, J. B. (1996). Strain differences in feather pecking behaviour and floor laying in hens kept in avaries. In Proc. 2nd European Poultry Breeders Roundtable, P. Sørensen (ed.), 6-8 September 1995, Foulum (pp. 176-176)

Kjær, J. B. (1995). Strain differences in feather pecking behaviour and floor laying. In 29th Int. Congr. of the Int. Soc. of Appl. Ethology, Exeter, UK. August 3-5 (pp. 191-192)

Kjær, J. B., Sørensen, P., Su, G. & Nielsen, B. L. (2005). Strain differences and heritability estimates of foot pad dermatitis and hock burn in broilers suggest genetic selection can improve welfare: CD communication. In Proc. 4th European Poultry Genetics Symposium

Albentosa, M., Kjær, J. B. & Nicol, C. J. (2003). Strain and age differences in behaviour, fear response and pecking tendency in laying hens. British Poultry Science, 44, 333-344.

Sørensen, M. T., Leffers, H., Poulsen, M. E., Vajta, G. & Halekoh, U. (2007). Stråforkortere og reproduktion hos svin. Paper presented at Temamøde vedr. svin, Foulum, Denmark.

Bendixen, C. (2000). Stor travlhed på gentypelaboratoriet. Ny KvægForskning, 2(4), 4.

Sørensen, M. K. & Fogh, A. (2010). Stort potentiale for krydsning i praksis. Ny KvægForskning, 3, 2-3.

Kargo, M. (2007). Større avslfremgang med kønssorteretsæd. Kvægavleren, 2007(05), 10-11.

Studnitz, M., Jensen, K. H. & Jørgensen, E. (2002). Storflokke - betydning af grupperingsstrategier og stiindretning. In DJF-Temamøde "Aggression hos søer og slagtesvin samt Strategisk fodring til styring af kødkvalitet". (pp. 15-19). Aarhus Universitet, Det Jordbrugsvidenskabelige Fakultet.

Nielsen, V. H., Møller, S. H., Hansen, B. K. & Berg, P. (2009). Store "Store mink" fordele og ulemper. In P. Berg (Ed.), Aktuel Pelsdyrforskning: Temadag på Det Jordbrugsvidenskabelige Fakultet (pp. 79-86). Aarhus Universitet, Det Jordbrugsvidenskabelige Fakultet.

Sørensen, M. K. & Berg, P. (1999). Stokastisk simulering af avslplaner for kvæg. In Metoder og planlægning i kvægavlen (pp. 63-91)

Kargo Sørensen, M. (1999). Stokastisk simulering af avlsplaner for malkekvæg. DJF rapport - Husdyr No. 13

Sørensen, M. K. (2000). Stokastisk simulering af avlsplaner for malkekvæg. In Årsrapport 1999 (Vol. 88, pp. 26-31). De danske Kvægavlsforeninger.

Kargo Sørensen, M. (1999). Stokastisk simulering af avelsplaner for malkekvæg.

Pedersen, A. R. (1998). Stokastiske processer som model for vækst. Dina Notat, (75), 7-7.

Kargo Sørensen, M., Nielsen, L. P., Jørgensen, J. N. & Berg, P. (2002). Stochastic simulations of dairy cattle breeding schemes with cooperation populations. In Proc. 7th WCGALP, 33: CD-rom Communication No 23-05 (pp. 171-174). Editions Quae.

Tessema, B. B., Liu, H., Andersen, J. R. & Jensen, J. (2017). Stochastic Simulation of Selective Breeding Schemes for Wheat. Poster session presented at PAG 2017, San Diego, United States.

Nielsen, H. M., Groen, A. F., Pedersen, J. & Berg, P. (2004). Stochastic simulation of economic values and their standard deviations for production and functional traits in dairy cattle under current and future Danish production circumstances. Acta Agriculturae Scandinavica, Section A - Animal Science, 54, 113-126. https://doi.org/10.1080/09064700410032022

Hansen, B. K. & Berg, P. (2004). Stochastic simulation of breeding schemes to improve economic genetic merit in mink production. In Proc. VIII Intern. Scientific Congress in fur animal production (pp. 194-200)

Kargo Sørensen, M., Berg, P., Jensen, J. & Christensen, L. G. (1999). Stochastic simulation of breeding schemes for total merit in dairy cattle. In Bulletin No. 23 of the GIFT Seminar on Gentic Improvement of Functional Traits in Cattle (pp. 183-192)

Kargo Sørensen, M., Berg, P., Jensen, J. & Christensen, L. G. (1999). Stochastic simulation of breeding schemes for dairy cattle. In Book of Abstracts No. 5 of the 50th EAAP (pp. 33)

Meier, K., Thirstrup, J., Lund, M. S. & Sørensen, A. C. (2015). Stochastic simulation of breeding plans in mink: evaluation of genomic selection. In Book of Abstract of the 66th Annual Meeting of the European Federation of Animal Science (Vol. 21, pp. 390-390). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-816-2

Peura, J., Sørensen, A. C., Meier, K. & Rydhmer, L. (2015). Stochastic simulation of alternative future blue fox breeding strategies. In Book of Abstract of the 66th Annual Meeting of the European Federation of Animal Science (Vol. 21, pp. 391-391). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-816-2

Lauridsen, J. (1998). Stochastic simulation of alternative breeding schemes for Danish meat type sheep & Ultrasonic eyemuscle and backfat measurements on lambs. Aarhus Universitet, Det Jordbrugsvidenskabelige Fakultet.

Jørgensen, E. (1998). Stochastic Modelling of Pig Production Working Paper: Reproduction Model. Dina Notat No. 65

Jørgensen, E. (1998). Stochastic Modelling of Pig Production Working Paper: Models of Measurements. Dina Notat No. 64

Jørgensen, E. (1998). Stochastic Modelling of Pig Production Working Paper: Model of Management revision 1. Dina Notat No. 71

Jørgensen, E. (1998). Stochastic modelling of pig production. Dina Notat No. 73

Jeon, G.-J., Mao, I. L., Jensen, J. & Ferris, T. A. (1990). Stochastic modelling of multiple ovulation and embryo transfer (MOET) breeding schemes in small closed dairy cattle populations. Journal of Dairy Science, 73, 1938-1944.

Vestergaard, E. M. & Jørgensen, E. (1999). Stochastic Dynamic Modelling of Respiratory Diseases in Pigs. Poster session presented at Conference Biology of Animal Stress. Implications for Animal Well-being, University of California, United States.

Pedersen, A. R., Petersen, S. O. & Vinther, F. P. (2001). Stochastic Diffusion Model for Estimating Trace Gas Emission with Static Chambers. Soil Science Society of America Journal, 65, 49-58.

Christiansen, J. L., Jørgensen, J. R. & Stölen, O. (1995). Stimulation of Regrowth in Barley by Application of Cytokinin. Acta Agriculturae Scandinavica, Section B - Soil & Plant Science, 45, 258-260. https://doi.org/10.1080/09064719509413112

Løvendahl, P. & Klemetsdal, G. (2004). Stimulated Growth Hormone Release in Juvenile Cattle Genetically Selected for High and Low Milk Yield. Acta Agriculturae Scandinavica, Section A - Animal Science, 54(1), 2-9. https://doi.org/10.1080/09064700410024319

Hansen, M. (2002). Stigende kalvedødelighed i opvækstperioden. Sortbroget Kvæg, 3, 54-56.

Vajta, G., Lewis, I. M., Kuwayama, M., Greve, T. & Callesen, H. (1998). Sterile application of the Open Pulled Straw (OPS) vitrification method. CryoLetters, 19, 389-392.

Hansen, B. K., Jeppesen, L. L. & Berg, P. (2010). Stereotypic behaviour in farm mink (Mustela vison) can be reduced by selection. Journal of Animal Breeding and Genetics, 127(1), 64-73. https://doi.org/10.1111/j.1439-0388.2009.00814.x

Hansen, B. K., Jeppesen, L. L. & Berg, P. (2006). Stereotyped behaviour can be reduced by selection. In Book of abstracts: CD communication 17-05, 4 pp (pp. 172). WCGALP. http://www.wcgalp8.org.br/wcgalp8/articles/paper/17_788-1758.pdf

Hansen, B. K., Jeppesen, L. L., Svendsen, P. M. & Berg, P. (2005). Stereotyped behaviour can be reduced by breeding. In Proc. NJF Seminar 377, NJF's subsection for Fur Animals

Hansen, B. K., Jeppesen, L. L. & Berg, P. (2008). Stereotyp adfærd hos mink er avelig. In P. Sandbøl (Ed.), Faglig årsberetning 2007 (pp. 31-37). Pelsdyrerhvervets Forsøgs- og Forskningscenter.

Alexopoulos, N. I., Vajta, G., Maddox-Hyttel, P., French, A. J. & Trounson, A. (2005). Stereomicroscopic and historical examination of bovine embryos following extended in vitro culture. Reproduction, Fertility and Development, 17, 799-808. http://www.publish.csiro.au/nid/44/paper/RD04104.htm

Nielsen, J. (1999). Stereology - Statistical Theory and Applications in Agricultural Sciences.

Rousing, T., Bonde, M., Badsberg, J. H. & Sørensen, J. T. (2004). Stepping and kicking behaviour during milking in relation to response in human-animal interaction test and clinical health in loose housed dairy cows. Livestock Production Science, 88(1-2), 1-8. https://doi.org/10.1016/j.livprodsci.2003.12.001

Sandøe, P., Nielsen, B. L., Christensen, L. G. & Sørensen, P. (1999). Staying good while playing God - the ethics of breeding farm animals. Animal Welfare, 8, 313-328.

Boelt, B. (2009). Status vedrørende forskningsresultater omkring dyrkning af GM-planter. In GMO - hvad kan vi bruge det til?: Fødevareministeriets vidensyntese om brug af genmodificerede afgrøder i landbrugs- og fødevareproduktion (pp. 74-75). Ministeriet for Fødevarer, Landbrug og Fiskeri. http://pdir.fvm.dk/Admin/Public/DWSDownload.aspx?File=%2fFiles%2fFiler%2fVirksomheder%2fGMO%2fPublikationer%2fPub_GMO-syntesen.pdf

Berg, P. (1993). Status over viden om avlsarbejdet med vore pelsdyr. Dansk Pelsdyravl, 56(9), 320-321.

Andersen, B. B. (2002). Status og perspektiver i dansk avlsforskning. Dansk Kvægavl, Årsrapport, 100, 50-51.

Sørensen, P. (2001). Status og perspektiver for forskning og udvikling af økologisk ægproduktion. In FØJO-rapport (Vol. 11, pp. 7-12)

Boelt, B. (2009). Status for GMO-forskning: Konklusion. In GMO - hvad kan vi bruge det til?: Fødevareministeriets vidensyntese om brug af genmodificerede afgrøder i landbrugs- og fødevareproduktion (pp. 83). Ministeriet for Fødevarer, Landbrug og Fiskeri. http://pdir.fvm.dk/Admin/Public/DWSDownload.aspx?File=%2fFiles%2fFiler%2fVirksomheder%2fGMO%2fPublikationer%2fPub_GMO-syntesen.pdf

Løvendahl, P. & Villumsen, T. (1999). Status for fysiologiske indeks. In Metoder og planlægning i kvægavlen (pp. 45-49)

Kristensen, K. & Petersen, J. (1994). Statistiske modeller til beregning af værdital for ammoniumkvælstof i kvæggylle. SP Rapport No. 8

Tøgersen, F. A. & Waagepetersen, R. (2004). Statistical Modelling and Deconvolution of Yild Meter Data. Scandinavian Journal of Statistics, 31(2), 247-264. https://doi.org/10.1111/j.1467-9469.2004.02-024.x

Tøgersen, F. A. & Waagepetersen, R. (2002). Statistical modelling and deconvolution of yield meter data. Technical Report No. 2002-02

Tøgersen, F. A. (2003). Statistical modelling and deconvolution of yield meter data. In Temamøde om Biometrianvendelse i planteforskningen (pp. 5-13)

Chu, T. T., Henryon, M., Jensen, J., Ask, B. & Christensen, O. F. (2021). Statistical model and testing designs to increase response to selection with constrained inbreeding in genomic breeding programs for pigs affected by social genetic effects. Genetics Selection Evolution, 53(1), Article 1. https://doi.org/10.1186/s12711-020-00598-8

Sorensen, D., Korsgaard, I. R., Madsen, P. & Jensen, J. (2002). Statistical Methods in Quantitative Genetics. In J. Jensen (Ed.), Animal Breeding and Genetics in the 21st Century; Status and Visions for Future Research (pp. 13-30)

Lund, M. S. (2003). Statistical methods for QTL mapping. In Proc. International Symposium on Research Trends and Strategies of Animal Biotechnology (pp. 47-55)

Anantharama Ankinakatte, S., Højsgaard, S. & Løvendahl, P. (2012). Statistical methods for online data with agricultural applications. In MBG Annual PhD-days 2012 (pp. 18-18).

Anantharama Ankinakatte, S. (2014). Statistical methods for longitudinal data with agricultural applications. Aarhus University, Faculty of Science and Technology.

Kristensen, K. (1999). Statistical methods for analysing genotype-environment interactions in variety trials. Technical Report No. 15

Højsgaard, S. (2004). Statistical Inference in Context Specific Interaction Models for Contingency Tables. Scandinavian Journal of Statistics, 31(1), 143-158. https://doi.org/10.1111/j.1467-9469.2004.00378.x

Halekoh, U. (2008). Statistical Framework for Recreational Water Quality Criteria and Monitoring. Journal of Environmental Quality, 37, 1998. https://doi.org/10.2134/jeq2008.0013br

Kristensen, K. (2003). Statistical aspects of experimental designs implemented in designs. (September ed.) Internal report BAR-OF

Mahdi Shariati, M. (2007). Statistical aspects and application of reaction norm models. Department of Large Animal Science, Faculty of Life Science, University of Copenhagen.

Labouriau, R., Schulin-Zeuthen, M. & Danfær, A. C. (2000). Statistical analysis of pigs development: An application of Richards regression models. Internal Report No. 14

Labouriau, R., Andersen, J. O. & Nielsen, M. (1999). Statistical analysis of biocristallization patterns of carrots extracts. Internal Report of the Biometry Research Unit.

Nagel, M. .-D., Morra, M., Ceccone, G., Dela Volpe, C., Knox, J. P., Schols, H., Visser, R., Ulvskov, P., Tuukkanen, J. & Agliati, G. (2006). Statice Sante Nanobiotechnology for the coating of medical devices PectiCoat. In Proc. International Congress on Nanobiotechnology: NanobioEurope (pp. 41)

Thorbjørnsen, T., Asp, T., Jørgensen, K. & Nielsen, T. H. (2002). Starch biosynthesis from triose-phosphate in transgenic potato tubers expressing plastidic fructose-1,6-bisphosphatase. Planta, 214, 616-624.

Norberg, E. (2008). Stærke og livskraftige Jersey kalve - hvordan kan avl hjælpe os? In Bilag til Dansk Kvæg kongress (pp. 64-65)

Østergård, H., Kristensen, K. & Jensen, J. W. (2005). Stability of variety mixtures of spring barley. In E. T. Lammerts van Bueren, I. Goldringer & H. Østergård (Eds.), Proc. COST SUSVAR/ECO-PB (pp. 28-30)

Jørgensen, B. & Albrechtsen, M. T. (2003). Stability of RNA silencing-based traits in genetically modified plants. In Proc. Conference on Genetically Modified Crops - The American Experience (pp. 20). BioTik.

Jørgensen, B. & Albrechtsen, M. (2007). Stability of RNA silencing-based traits after virus infection. Molecular Breeding, 19(4), 371-376. https://doi.org/10.1007/s11032-006-9068-4

Nielsen, S. L., Bång, H., Kotkas, K., Palohuhta, J. K. & Tolstrup, K. (2002). Stability of potato meristem clones. TemaNord Vol. 2002 No. 555

Bruun-Rasmussen, M., Madsen, C. T., Jessing, S. & Albrechtsen, M. (2007). Stability of Barley stripe mosaic virus induced gene silencing in barley. Molecular plant-microbe interactions, 20(11), 1323-1331. https://doi.org/10.1094/MPMI-20-11-1323

Zhu, Z., Difford, G., Noel, S. J., Lassen, J., Løvendahl, P. & Hojberg, O. (2021). Stability Assessment of the Rumen Bacterial and Archaeal Communities in Dairy Cows Within a Single Lactation and Its Association With Host Phenotype. Frontiers in Microbiology, 12, Article 636223. https://doi.org/10.3389/fmicb.2021.636223

Jensen, L. F. B., Taylor, C., Holm, P. B. & Lübberstedt, T. (2003). SSR markers in Lolium perenne L. In Proceedings of the 3rd International Symposium, Molecular Breeding of Forage and Turf (pp. 156). Springer.

Pedersen, A. R. (2002). Spurious results in therapeutic drug monitoring research. Therapeutic Drug Monitoring, 24(6), 775-784.

Pedersen, A. R. (2002). Spurious results in therapeutic drug monitoring research. Department of Biostatistics, University of Aarhus.

Petersen, B. O., Braunstein, T. H. & Albrechtsen, M. (2002). Spread of virus-induced gene silencing in both 3' to 5' and 5' to 3' directions from the primary target region. In Proceeding XIIth International Congress of Virology (pp. 890)

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