Publications

Peer-reviewed publications at QGG

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Ma, P., Su, G. & Zhang, Q. (2012). Genomic Selection in Cattle Breeding. In MBG Annual PhD-days 2012 (pp. 17-17).

Castro Dias Cuyabano, B., Su, G. & Lund, M. S. (2012). Genomics Prediction Using High Density Marker and RE-Sequence. In MBG Annual PhD-days 2012 (pp. 16-16).

Kadri, N. K., Sahana, G., Sørensen, P. & Guldbrandtsen, B. (2012). Methods for genome wide association study in structured population. In MBG Annual PhD-days 2012 (pp. 19-19).

Krag, K. (2012). Quantitative milk genomics. In MBG Annual PhD-days 2012 (pp. 15-15).

Limborg, M. T., Blankenship, S. M., Young, S. F., Utter, F. M., Sebb, L. W., Hansen, M. & Sebb, J. E. (2012). Signatures of natural selection among lineages and habitats in Oncorhynchus mykiss. Ecology and Evolution, 2(1), 1-18. https://doi.org/10.1002/ece3.59

Anantharama Ankinakatte, S., Højsgaard, S. & Løvendahl, P. (2012). Statistical methods for online data with agricultural applications. In MBG Annual PhD-days 2012 (pp. 18-18).

Liu, H., Berg, P. & Sørensen, A. C. (2012). The prediction of allele frequency under selection: A simulation study. In MBG Annual PhD-days 2012 (pp. 19-19).

Gourdine, J.-L., Sørensen, A. C. & Rydhmer, L. (2012). There is room for selection in a small local pig breed when using optimum contribution selction: A simulation study. Journal of Animal Science, 90(1), 76-84. https://doi.org/10.2527/jas.2011-3898

Edwards, S. M., Skarman, A., Jiang, L., Madsen, P., Su, G. & Sørensen, P. (2012). Using KEGG pathway information for genomic partitioning. In MBG Annual PhD-days 2012 (pp. 18-18).

Petersen, S. O., Hoffmann, C. C., Schäfer, C., Blicher-Mathiesen, G., Elsgaard, L., Kristensen, K., Larsen, S. E., Torp, S. B. & Greve, M. H. (2012). Annual emissions of CH₄and N₂O, and ecosystem respiration, from eight organic soils in Western Denmark managed by agriculture. Biogeosciences, 9(1), 403-422. https://doi.org/10.5194/bg-9-403-2012

Sørensen, L. P. & Løvendahl, P. (2012). Are in-line measurements of somatic cell counts equally or more useful for genetic evaluations as those from DHI? Journal of Animal Science, 90(Suppl, 3/J), 682-682. http://www.jtmtg.org/JAM/2012/abstracts.asp

Farrell, J. D., Byrne, S. & Asp, T. (2012). Assembly and Analysis of de novo transcriptome in perennial ryegrass. Poster session presented at 7th International Symposium on Molecular Breeding of Forage and Turf (MBFT 2012), Salt Lake City, Utah, United States.

Su, G., Brøndum, R. F., Ma, P., Guldbrandtsen, B., Aamand, G. P. & Lund, M. S. (2012). Comparison of genomic predictions using medium-density (~54,000) and high-density (~777) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations. Journal of Dairy Science, 95(8), 4657-4665. https://doi.org/10.3168/jds.2012-5379

Christensen, O. F. (2012). Compatibility of pedigree-based and marker-based relationship matrices for single-step genetic evaluation. Genetics Selection Evolution, 44, Article 37. https://doi.org/10.1186/1297-9686-44-37

Novicic, Z. K., Pertoldi, C., Kristensen, T. N., Randi, E., Santos, M., Milankov, V., Stamenkovic-Radak, M. & Andjelkovic, M. (2012). Conservation Biology: The Need for Multidisciplinary Approaches. Evolutionary Ecology Research, 14, 787-791. http://www.evolutionary-ecology.com/

Skovsgaard, H., Li, R., Liu, Y., Løvendahl, P., Holm, P., Hyttel, P. & Callesen, H. (2012). Development capacity of oocytes from pre- and post-pubertal pigs. Poster session presented at 28th Annual Meeting of the AETE, Saint Malo, France.

Koivula, M., Strandén, I., Su, G. & Mäntysaari, E. A. (2012). Different methods to calculate genomic predictions--comparisons of BLUP at the single nucleotide polymorphism level (SNP-BLUP), BLUP at the individual level (G-BLUP), and the one-step approach (H-BLUP). Journal of Dairy Science, 95(7), 4065-4073. https://doi.org/10.3168/jds.2011-4874

Nielsen, U. S., Pösö, J., Madsen, P., Mántyssari, E. A., Pedersen, J., Su, G. & Aamand, G. P. (2012). Effect of genomic preselection on the stability of EBV’s from traditional BLUP procedure for production traits – a practical illustration. Abstract from Interbull meeting, Cork, Ireland.

Pertoldi, C., Pellegrino, I., Cucco, M., Mucci, N., Randi, E., Laursen, J. T., Sunde, P., Loeschcke, V. & Kristensen, T. N. (2012). Genetic consequences of population decline in the Danish population of the little owl (Athene noctua). Evolutionary Ecology Research, 14(7), 921-932. http://www.evolutionary-ecology.com/

Su, G. (2012). Genetic improvement of litter size and piglet survival. Invited speech.. Abstract from The 1st China Swine Breeding Symposium & International Forum on Breeding Technology and System., Beijing, China.

Krag, K., Poulsen, N. A., Larsen, M. K., Larsen, L. B. & Buitenhuis, B. (2012). Genetic parameters for fatty acids in Danish Holstein cattle based on SNP markers using a Bayesian approach. Abstract from 9th International Symposium on Milk Genomics & Human Health, Wageningen, Netherlands.

Thirstrup, J. P., Labouriau, R., Guldbrandtsen, B., Anistoroaei , R., Kristensen, K., Fredholm, M. & Nielsen, V. H. (2012). Genetisk kortlægning hos mink (Neovison vison) viser QTL fordækhårstykkelse, dækhårslængde og underuldstæthed. In Faglig Årsberetning 2011 (pp. 50-55). Pelsdyrerhvervets Forsøgs- og ForskningsCenter.

Misztal, I. & Løvendahl, P. (2012). Genotype by Environment Interachtions in Commercial Populations. In R. J. Collier & J. L. Collier (Eds.), Environmental Physiology of Livestock (1 ed., pp. 289-307). Wiley-Blackwell.

Kristensen, T. N., Overgaard, J., Hoffmann, A. A., Nielsen, N. C. & Malmendal, A. (2012). Inconsistent effects of developmental temperatureacclimation on low-temperature performance andmetabolism in Drosophila melanogaster. Evolutionary Ecology Research, 14, 821-837. http://www.evolutionary-ecology.com/

Janss, L., de los Campos, G., Sheehan, N. & Sorensen, D. (2012). Inferences from Genomic Models in Stratified Populations. Genetics, 192(2), 693-704. https://doi.org/10.1534/genetics.112.141143

Sundekilde, U., Poulsen, N. A., Buitenhuis, A. J., Gustavsson, F., Paulsson, M., Larsen, L. B. & Bertram, H. C. S. (2012). Milk metabolite composition and its relation to nutritional and technological quality – a NMR metabolomics approach. In Proceedings from 9th International Symposium on Milk Genomics and Human Health (pp. 5)

Sundekilde, U., Poulsen, N. A., Buitenhuis, A. J., Gustavsson, F., Paulsson, M., Larsen, L. B. & Bertram, H. C. S. (2012). Milk metabolite composition and its relation to nutritional and technological quality – a NMR metabolomics approach. Poster session presented at 9th International Symposium on Milk Genomics & Human Health, Wageningen, Netherlands.

Edwards, D., Wang, L. & Sørensen, P. (2012). Network-enabled gene expression analysis. BMC Bioinformatics, 13, Article 167. https://doi.org/10.1186/1471-2105-13-167

Lamandé, M., Keller, T., Labouriau, R. & Schjønning, P. (2012). Numerical method for determination of point of maximum curvature on soil compression curves from unixial confined compression tests. Abstract from 19th International Conference of the International Soil Tillage Research Organization, Montevideo, Uruguay.

Karacaoren, B., Janss, L. L. G. & Kadarmideen, H. (2012). Predicting Breeding Values in Animals by Kalman Filter: Application to Body Condition Scores in Dairy Cattle . Kafkas Universitesi Veteriner Fakultesi Dergisi, 18(4), 627-632.

Nielsen, V. H., Møller, S. H., Hansen, B. K. & Berg, P. (2012). Respons på selektion og genotype-miljø vekselvirkning i linjer af mink (Neovison vison) selekteret under ad libitum og restriktiv fodring. In Faglig Årsberetning 2011 (pp. 34-43). Pelsdyrerhvervets Forsøgs- og ForskningsCenter.

Marete, A. G. & Brunste, A. (Ed.) (2012). Review of breeding strategies for major livestock species in Kenya. http://www.infonet-biovision.org

Berg, P., Møller, S. H. & Alemu, S. W. (2012). Selektion imod bidskader i gruppeindhusning. In Faglig Årsberetning 2011 (pp. 24-27). Pelsdyrerhvervets Forsøgs- og ForskningsCenter. http://www.kopenhagenfur.com/avler/fagligt/forskning/faglig-aarsberetning/

Islam, M. S., Møller, I. M., Studer, B., Byrne, S., Panitz, F., Bendixen, C. & Asp, T. (2012). Sequencing and annotation of the perennial ryegrass mitochondrial genome. Abstract from 7th International Symposium on Molecular Breeding of Forage and Turf (MBFT 2012), Salt Lake City, Utah, United States.

Kargo, M., Madsen, P. & Norberg, E. (2012). Short communication: Is crossbreeding only beneficial in herds with low management level? Journal of Dairy Science, 95(2), 925-928. https://doi.org/10.3168/jds.2011-4707

Boleckova, J., Christensen, O. F., Sørensen, P. & Sahana, G. (2012). Strategies for haplotype-based association mapping in complex pedigreed populations. Czech Journal of Animal Science, 57(1), 1-9. http://www.agriculturejournals.cz/web/cjas.htm?journal=CJAS&futureArticleId=83160539&type=futureArticleAbstract

Studer, B., Asp, T., Byrne, S., Lübberstedt, T., Martis, M., Mayer, K. & Pfeifer, M. (2012). The Lolium genome zipper – targeted use of grass genome resources for ryegrass genomics. Abstract from 7th International Symposium on Molecular Breeding of Forage and Turf (MBFT 2012), Salt Lake City, Utah, United States. http://mbft.usu.edu/ProgramDetails.cfm?abid=47

Larsen, L. B., Poulsen, N. A., Jensen, H. B., Gustavsson, F., Glantz, M., Gregersen, V. R., Bertelsen, H. P., Larsen, M. K., Sundekilde, U., Kragh, K., Pedersen, K. S., Bakman, M., Nielsen, J. H., Lindmark-Månsson, H., Stålhammar, H., Bertram, H. C. S., Sørensen, P., Buitenhuis, A. J., Bendixen, C. ... Paulsson, M. (2012). The Swedish-Danish Milk Genomics Initiative: Variation in milk phenotypes, effect on milk properties and underlying genetic influence in three Scandinavian breeds. In Proceedings from 9th International Symposium on Milk Genomics and Human Health (pp. 17)

Larsen, P. F., Demontis, D., Nielsen, V. H., Thirstrup, J. P., Loeschcke, V. & Pertoldi, C. (2012). Udvikling af nye SNP markører til mink (Neovison vison). In Faglig Årsberetning 2011 (pp. 44-49). Pelsdyrerhvervets Forsøgs- og ForskningsCenter.

Lund, M. S., de Ross, S. PW., de Vries, A. G., Druet, T., Ducrocq, V., Fritz, S., Guillaume, F., Guldbrandtsen, B., Liu, Z., Reents, R., Schrooten, C., Seefried, F. & Guosheng, S. (2011). A common reference population from four European Holstein populations increases reliability of genomic predictions. Genetics Selection Evolution, 43(43), 1-28. https://doi.org/10.1186/1297-9686-43-43

Ostersen, T., Christensen, O. F., Henryon, M., Nielsen, B., Guosheng, S. & Madsen, P. (2011). Deregressed EBV as the response variable yield more reliable genomic predictions than traditional EBV in pure-bred pigs. Genetics Selection Evolution, 43(38), 1-6. https://doi.org/10.1186/1297-9686-43-38

Liu, Y., Østrup, O., Li, J., Vajta, G., Kragh, P., Purup, S. & Callesen, H. (2011). Cell colony formation induced by Xenopus egg extract as a marker for improvement of cloned blastocyst formation in pig. Cellular reprogramming, 13(6), 521-526. https://doi.org/10.1089/cell.2011.0029

Marete, A. G. (2011). An analysis of inbreeding levels and factors affecting growth and reproductive traits in the Kenya Alpine dairy goat. Livestock Research for Rural Development (Online), 23, Article 259. http://www.lrrd.org/lrrd23/12/mare23259.htm

Ettema, J. F., Østergaard, S. & Sørensen, M. K. (2011). Effect of including genetic Progress in milk yield on evaluating the use of sexed semen and other reproduction strategies in a dairy herd. Animal, 5(12), 1887-1897. https://doi.org/10.1017/S175173111100108X

Friggens, N. C., Thorup, V. M. & Edwards, D. (2011). Estimation à la ferme du bilan énergétique des vaches laitières à l'aide des mesures fréquentes de poids vif et de note d'état corporel. Abstract from 18th meeting of Les 3R, Paris, France.

Sørensen, L. H., Jørgensen, H. B. H., Kargo, M. & Thomsen, P. T. (2011). Kan taberkøer udpeges ved fødslen? Dansk Holstein, 4, 51-53.

Høj-Edwards, S. M., Skarman, A., Jiang, L., Madsen, P., Su, G. & Sørensen, P. (2011). Using KEGG pathway information for genomic partitioning. Poster session presented at Functional Genomics and Systems Biology 2011, Hinxton, Cambridge, UK, United Kingdom.

Sørensen, L. H., Jørgensen, H. B. H., Sørensen, M. K. & Thomsen, P. T. (2011). Kan man udpege taberkøer ved fødslen? Kvæginfo, (2228).

Skovgård, H., Kristensen, K. & Hald, B. (2011). Retention of Campylobacter (Campylobacterales: Campylobacteraceae) in the house fly (Diptera: Muscidae). Journal of Medical Entomology, 48(6), 1202-1209. https://doi.org/10.1603/ME11061

Fiil, A., Jensen, L. B., Fjellheim, S., Lübberstedt, T. & Andersen, J. R. (2011). Variation in the vernalization response of a geographically diverse collection of timothy genotypes. Crop Science, 51(6), 2689-2697. https://doi.org/10.2135/cropsci2010.12.0677

Løvendahl, P. & Chagunda, G. G. (2011). Covariance among milking frequency, milk yield, and milk composition from automatically milked cows. Journal of Dairy Science, 94(11), 5381-5392. https://doi.org/10.3168/jds.2010-3589

Sahana, G., Mailund, T., Lund, M. S. & Guldbrandtsen, B. (2011). Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations. PLoS One, 6(11).

Kristensen, T. N., Loeschcke, V., Bilde, T., Hoffmann, A. A., Sgró, C., Noreikiené, K. S., Ondrésik, M. & Bechsgaard, J. S. (2011). No Inbreeding depression for low temperature developmental acclimation across multiple drosophila species. Evolution, 65(11), 3195-3201. https://doi.org/10.1111/j.1558-5646.2011.01359.x

Sørensen, D. D., Jørgensen, E. & Pedersen, L. J. (2011). Overfladetemperatur som velfærdsindikator. Poster session presented at VID Årsmøde, København, Denmark.

Sørensen, D. D., Jørgensen, E. & Pedersen, L. J. (2011). Validation techniques for thermography in veterinary medicine. Poster session presented at InfraMation, Ballys, Las Vegas, United States.

Lassen, J., Løvendahl, P. & Madsen, J. (2011). Animal variation in methane emission from breath of Danish Red, Holstein and Danish Jersey. In Effects of Climate Change on Primary Industries in the Nordic Countries: Proceedings (pp. 10-18). NordGen. http://www.nordgen.org/ngdoc/husdyr/workshops/AnGR/AnGR-NordicNET_WORKSHOP_Proceedings.pdf

Løvendahl, P. & Ismael, A. I. S. (2011). Climatic sensitivity of dairy cattle to heat-waves or extreme weather. In Effects of Climate Change on Primary Industries in the Nordic Countries: Proceedings (pp. 22-22). NordGen. http://www.nordgen.org/ngdoc/husdyr/workshops/AnGR/AnGR-NordicNET_WORKSHOP_Proceedings.pdf

Sørensen, A. C., (2011). Vedr.: Ansøgning om EU godkendelse af Foreningen for Shireavl i Danmark., No. 798350, 6 p., Oct 10, 2011.

Sørensen, A. C., (2011). Vedr.: Ansøgning om EU godkendelse af Pinto-Araber sektionen i Dansk Pinto Forening, No. 798347, 6 p., Oct 10, 2011.

Overgaard, J., Hoffmann, A. A. & Kristensen, T. N. (2011). Assessing population and environmental effects on thermal resistance in Drosophila melanogaster using ecologically relevant assays. Journal of Thermal Biology, 36, 409-416. https://doi.org/10.1016/j.jtherbio.2011.07.005

Zink, V., Stipkova, M. & Lassen, J. (2011). Genetic parameters for female fertility, locomotion, body condition score, and linear type traits in Czech Holstein cattle. Journal of Dairy Science, 94(10), 5176. https://doi.org/10.3168/jds.2010-3644

Lassen, J. (2011). Jagten på miljørigtige køer er begyndt. Bovilogisk, (10), 38-40.

Pedersen, L. J., Malmkvist, J. & Jørgensen, E. (2011). Mange pattegrise kan reddes ved tildeling af ekstra varme omkring faring. Hyologisk, 30-33.

Pedersen, L. D., Pedersen, A. R., Bijlsma, K. & Bundgaard, J. (2011). The effects of inbreeding and heat stress on male sterility in Drosophila melanogaster. Biological Journal of the Linnean Society, 104(2), 432-442. https://doi.org/10.1111/j.1095-8312.2011.01725.x

Overgaard, J., Kristensen, T. N., Mitchell, K. A. & Hoffmann, A. A. (2011). Thermal Tolerance in Widespread and Tropical Drosophila Species: Does Phenotypic Plasticity Increase with Latitude? American Naturalist, 178(S1), 80-96. https://doi.org/10.1086/661780

Steffensen, S. K., Pedersen, H. A., Labouriau, R., Mortensen, A. G., Laursen, B., de Troiani, R. M., Noellemeyer, E. J., Janovska, D., Stavelikova, H., Taberner, A., Christophersen, C. & Fomsgaard, I. S. (2011). Variation of Polyphenols and Betaines in Aerial Parts of Young, Field-Grown Amaranthus Genotypes. Journal of Agricultural and Food Chemistry, 59(22), 12073-12082. https://doi.org/10.1021/jf202969e

Berg, P. (2011). Er genomisk selektion en revolution af avlsarbejdet med mink? In P. Berg (Ed.), Temadag om aktuel minkforskning (pp. 85-89). Aarhus Universitet, Forskningscenter Foulum.

Thirstrup, J. P., Labouriau, R., Guldbrandtsen, B., Anistoroaei, R. M., Christensen, K., Fredholm, M. & Nielsen, V. H. (2011). Ny jagt på pelsgener. In P. Berg (Ed.), Temadag om aktuel minkforskning (pp. 75-80). Aarhus Universitet, Forskningscenter Foulum.

Berg, P., Møller, S. H. & Alemu, S. W. (2011). Selektion imod bidskader i gruppeindhusning – resultater fra første generation. In P. Berg (Ed.), Temadag om aktuel minkforskning (pp. 48-52). Aarhus Universitet, Forskningscenter Foulum.

Weisbjerg, M. R., Søegaard, K., Duchwaider, V. & Nielsen, K. A. (2011). Rødkløver til malkekøer - hvad ved vi? Landbrugsinfo, KvægInfo, (2218). http://www.landbrugsinfo.dk/Kvaeg/Foder/Grovfoder/Sider/2218-Roedkloever-til-malkekoeer-hvad-ved-vi.aspx

Jørgensen, E., (2011). Høringssvar over bekendtgørelse om registrering af besætninger i CHR, No. 794254 & 794257, 5 p., Sept 05, 2011.

Loeschcke, V., Kristensen, T. N. & Norry, F. M. (2011). Consistent effects of a major QTL for thermal resistance in field-released Drosophila melanogaster. Journal of Insect Physiology, 57, 1227-1231. https://doi.org/10.1016/j.jinsphys.2011.05.013

Elsaid, R., Sabry, A., Lund, M. S. & Madsen, P. (2011). Genetic analysis of somatic cell score in Danish dairy cattle using ramdom regression test-day model. Livestock Science, 140, 95-102. https://doi.org/10.1016/j.livsci.2011.02.013

Thorup, V. M., Edwards, D. & Friggens, N. C. (2011). On-farm estimation of energy balance in dairy cows using frequent body weight measurements and body condition score. Advances in Animal Biosciences. Abstract from 8th International Conference on the Nutrition of Herbivores, Aberystwyth, United Kingdom.

Brøndum, R. F., Rius-Vilarrasa, E., Strandén, I., Guosheng, S., Guldbrandtsen, B., Fikse, W. F. & Lund, M. S. (2011). Reliabilities of genomic prediction using combined reference data of the Nordic Red dairy cattle production. Journal of Dairy Science, 94(9), 4700. https://doi.org/10.3168/jds.2010-3765