Smith, S. D., Soloy, E., Avery, B.
, Holm, P., Greve, T.
& Callesen, H. (1994).
Nucleus remodeling in reconstructed cattle embryos.
Theriogenology, (41), 298.
Smith, S. D., Soloy, E., Kanka, J.
, Holm, P. & Callesen, H. (1996).
Influence of recipient cytoplasm cell stage on transcription in bovine nucleus transfer embryos.
Molecular Reproduction and Development,
45, 444-450.
Smith, A. G.
, Malinowska, M., Ruud, A. K.
, Janss, L., Krusell, L., Jensen, J. D.
& Asp, T. (2024).
Automated seminal root angle measurement with corrective annotation.
AoB PLANTS,
16(5), Artikel plae046.
https://doi.org/10.1093/aobpla/plae046Sloth, K. H. M. N., Friggens, N., Ingvartsen, K. L., Korsgaard, I. R., Jensen, J. & Løvendahl, P. (2001).
Ændringer i mælk ved mastitis. I
Bilag til temadag "Malkekoens Energioptagelse, MObilisering og sundhed (MEMO)": Intern rapport nr. 148 (s. 87-112). Aarhus Universitet.
Slierendrecht, W. J., Olesen, N. J., Lorenzen, N.
, Juul-Madsen, H. R., Søndergaard, J., Henryon, M.
, Berg, P. & Koch, C. (1998).
MHC polymorphism in rainbow trout families with different resistance to VHS. I
The 4th Nordic Symposium on Fish Immunology, Hirtshals, Denmark, May, p (s. 5-5)
Slierendrecht, W. J., Olesen, N. J.
, Juul-Madsen, H. R., Lorenzen, N.
, Henryon, M., Berg, P., Søndergaard, J. & Koch, C. (2001).
Rainbow trout offspring with different resistance to viral haemorrhagic septicaemia and MHC polymorphism.
Fish and Shellfish Immunology,
11, 155-167.
Slagboom, M., Kargo, M., Edwards, D., Sørensen, A. C., Thomasen, J. R. & Hjortø, L. (2016).
Organic dairy farmers put more emphasis on production traits than conventional farmers.
Journal of Dairy Science,
99(12), 9845–9856.
https://doi.org/10.3168/jds.2016-11346
Slagboom, M., Kargo, M., Edwards, D., Sørensen, A. C., Thomasen, J. R. & Hjortø, L. (2016).
Herd characteristics influence farmers’ preferences for trait improvements in Danish Red and Danish Jersey cows.
Acta Agriculturae Scandinavica, Section A - Animal Science,
66(3), 177-182.
https://doi.org/10.1080/09064702.2016.1277550
Slagboom, M., Kargo, M., Edwards, D., Sørensen, A. C., Thomasen, J. R. & Hjortø, L. (2016).
Preferences for Breeding Goal Traits for Danish Red and Jersey Cattle. Abstract fra 67th Annual Meeting of the European Association for Animal Production (EAAP), Belfast, Storbritannien.
Slagboom, M., Kargo, M., Edwards, D., Sørensen, A. C., Thomasen, J. R. & Hjortø, L. (2016).
Organic and Conventional Dairy Farmers Prefer Different Improvements in Breeding Goal Traits. Poster-session præsenteret på 67th Annual Meeting of the European Association for Animal Production (EAAP), Belfast, Storbritannien.
Slagboom, M., Kargo, M., Hjortø, L., Thomasen, J. R. & Edwards, D. (2015).
Heterogeneity in farmer preferences for breeding goal traits - effects of herd characteristics and production system. Afhandling præsenteret på Meeting at VikingGenetics, 8960 Randers SØ, Danmark.
http://orgprints.org/30154/1/Slagboom_2015_BreedingGoalSurvey.pdf
Slagboom, M., Wallenbeck, A.
, Hjortø, L., Sørensen, A. C., Thomasen, J. R.
& Kargo, M. (2017).
Simulating consequences of choosing a breeding goal for organic dairy cattle production. Abstract fra 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estland.
Slagboom, M., Wallenbeck, A.
, Hjortø, L., Sørensen, A. C., Rydhmer, L.
, Thomasen, J. R. & Kargo, M. (2018).
Simulating consequences of choosing a breeding goal for organic dairy production.
Journal of Dairy Science,
101(12), 11086-11096.
https://doi.org/10.3168/jds.2017-14316
Slagboom, M., Wallenbeck, A., Rydhmer, L.
, Thomasen, J. R. & Kargo, M. (2018).
Breeding Goals for Organic Dairy Farming in Denmark Based on the Principles of Organic Agriculture. Afhandling præsenteret på ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Slagboom, M., Mulder, H. A.
, Sørensen, A. C., Hjortø, L., Thomasen, J. R. & Kargo, M. (2018).
Effects of specific breeding lines for organic dairy production in Denmark. Abstract fra 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Kroatien.
Slagboom, M., Kargo, M., Sørensen, A. C., Thomasen, J. R. & Mulder, H. A. (2019).
Genomic selection improves the possibility of applying multiple breeding programs in different environments.
Journal of Dairy Science,
102(9), 8197-8209.
https://doi.org/10.3168/jds.2018-15939
Slagboom, M., Hjortø, L., Sørensen, A. C., Mulder, H. A.
, Thomasen, J. R. & Kargo, M. (2019).
Possibilities for a specific breeding program for organic dairy production. 215-215. Abstract fra 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgien.
Slagboom, M., Hjortø, L., Sørensen, A. C., Mulder, H. A.
, Thomasen, J. R. & Kargo, M. (2020).
Possibilities for a specific breeding program for organic dairy production.
Journal of Dairy Science,
103(7), 6332-6345.
https://doi.org/10.3168/jds.2019-16900
Slagboom, M., Sørensen, A. C.
, Thomasen, J. R., Liu, H., Kargo, M. & Hjortø, L. (2021).
Ignoring genotype by environment interaction in the genetic evaluation of dairy cattle reduces accuracy but may increase selection intensity.
Journal of Dairy Science,
104(12), 12756-12764.
https://doi.org/10.3168/jds.2021-20876
Slagboom, M., Milkevych, V., Liu, H., Thomasen, J. R., Kargo, M. & Schmidtmann, C. (2022).
Conservation of local Red cattle breeds by collaboration with a mainstream Red dairy cattle breed.
Livestock Science,
260, Artikel 104936.
https://doi.org/10.1016/j.livsci.2022.104936
Slagboom, M., Nielsen, H. M., Kargo, M., Henryon, M.
& Hansen, L. S. (2023).
Simulating breeding programs based on mass selection in black soldier fly (Hermetia illucens). Abstract fra
74th Annual Meeting of European Federation of Animal Science, Lyon, Frankrig.
Slagboom, M., Nielsen, H. M., Kargo, M., Henryon, M.
& Hansen, L. S. (2024).
The effect of phenotyping, adult selection, and mating strategies on genetic gain and rate of inbreeding in black soldier fly breeding programs.
Genetics Selection Evolution,
56(1), Artikel 71.
https://doi.org/10.1186/s12711-024-00938-y
Skovsted, K., Henryon, M., Rydhmer, L.
, Jensen, J. & Solanes, F. X. (2005).
Growth rate of growing pigs is weakly correlated genetically with litter size, while the amount of genetic variation for growth rate changes with litter size.
Acta Agriculturae Scandinavica, Section A - Animal Science,
55(2-3), 66-73.
Skovsgaard, H., Li, R., Liu, Y., Løvendahl, P., Holm, P., Hyttel, P.
& Callesen, H. (2012).
Development capacity of oocytes from pre- and post-pubertal pigs. Poster-session præsenteret på 28th Annual Meeting of the AETE, Saint Malo, Frankrig.
Skovsgaard, H., Li, R., Liu, Y., Løvendahl, P., Holm, P., Hyttel, P.
& Callesen, H. (2013).
Development capacity of pre- and postpubertal pig oocytes evaluated by somatic cell nuclear transfer and parthenogenetic activation. Reproduction, Fertility and Development,
25(1), 241-242.
https://doi.org/10.1071/RDv25n1Ab185
Skovgaard, K., Mortensen, S., Boye, M.
, Hedegaard, J. & Heegaard, P. M. H. (2010).
Hepatic gene expression changes in pigs experimentally infected with the lung pathogen Actinobacillus pleuropneumoniae as analysed with an innate immunity focused microarray.
Innate Immunity,
16(6), 343-353.
https://doi.org/10.1177/1753425909342730Skovbjerg, C. K., Knudsen, J. N., Füchtbauer, W.
, Stougaard, J., Stoddard, F. L.
, Janss, L. & Andersen, S. U. (2020).
Evaluation of yield, yield stability, and yield–protein relationship in 17 commercial faba bean cultivars.
Legume Science,
2(3), Artikel e39.
https://doi.org/10.1002/leg3.39
Skovbjerg, C. K., Angra, D., Robertson-Shersby-Harvie, T., Kreplak, J., Keeble-Gagnère, G., Kaur, S., Ecke, W., Windhorst, A., Nielsen, L. K., Schiemann, A., Knudsen, J., Gutierrez, N., Tagkouli, V.
, Fechete, L. I., Janss, L., Stougaard, J., Warsame, A., Alves, S., Khazaei, H.
... Andersen, S. U. (2023).
Genetic analysis of global faba bean diversity, agronomic traits and selection signatures.
Theoretical and Applied Genetics,
136(5), Artikel 114.
https://doi.org/10.1007/s00122-023-04360-8
Skovbjerg, C. K., Sarup, P. M., Wahlström, E., Jensen, J. D., Orabi, J.
, Jensen, J., Jahoor, A.
& Ramstein, G. (2025).
Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program.
Heredity,
134(1), 33-48. Artikel 63.
https://doi.org/10.1038/s41437-024-00733-x
Skovbjerg, C. K., Sarup, P., Wahlström, E., Jensen, J. D., Orabi, J., Olesen, L.
, Jensen, J., Jahoor, A.
& Ramstein, G. (2025).
Correction: Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program (Heredity, (2025), 134, 1, (33-48), 10.1038/s41437-024-00733-x).
Heredity,
134(3), 248-249.
https://doi.org/10.1038/s41437-025-00751-3
Skovbjerg, C. K., Sarup, P., Wahlström, E. M., Jensen, J. D.
, Olesen, L., Orabi, J.
, Jensen, J., Ramstein, G. P. & Jahoor, A. (2025).
Genomic prediction in a small barley population can benefit from training on related populations.
G3 (Bethesda, Md.),
15(11).
https://doi.org/10.1093/g3journal/jkaf218,
https://doi.org/10.1093/g3journal/jkaf218
Skjøt, M., Pauly, M., Bush, M. S., McCann, M. C.
, Borkhardt, B. & Ulvskov, P. (2001).
Modification of plant cell wall pectin by Golgi targeted expression of an endo-arabinanase. Poster-session præsenteret på International Cell Wall Meeting, Toulouse, Frankrig.
Skjøt, M., Pauly, M., Bush, M. S.
, Borkhardt, B., McCann, M. C.
& Ulvskov, P. (2002).
Direct interference with rhamnogalacturonan I biosynthesis in Golgi vesicles.
Plant Physiology,
129, 18.
Skjøt, M., Kauppinen, S., Kofod, L. V., Fuglsang, C., Pauly, M., Dalboge, H. & Andersen, L. N. (2001).
Functional cloning of an endo-arabinanase from Aspergillus aculeatus and its heterologous expression in A or oryzae and tobacco.
Molecular Genetics and Genomics,
265(5).
Skjøt, M., Sørensen, S., Bush, M.
, Jørgensen, B., Borkhardt, B. & Ulvskov, P. (2000).
Tuber-specific expression of a fungal endo-(1->5)-alpha-arabinanase in potato results in phenotypic alterations. Poster-session præsenteret på International Congress of Plant Molecular Biology, Quebec, Canada.
https://doi.org/10.1007/BF02825286Skjerve, T. A., Grova, L., Sorheim, L. K.
, Slagboom, M., Eriksson, S.
, Kargo, M. & Wallenbeck, A. (2018).
Norwegian dairy farmers' preferences for breeding goal traits and associations with herd and farm characteristics.
Acta Agriculturae Scandinavica, Section A - Animal Science,
68(3), 117-123.
https://doi.org/10.1080/09064702.2019.1627406Skarman, A., Jiang, L., Hornshøj, H., Buitenhuis, B., Hedegaard, J., Conley, L. N. & Sørensen, P. (2009).
Gene set analysis of the EADGENE chicken data-set.
BMC Proceedings, (4:S8).
https://doi.org/10.1186/1753-6561-3-S4-S8
Skarman, A., Mahdi Shariati, M., Janss, L., Jiang, L. & Sørensen, P. (2012).
A Bayesian variable selection procedure for ranking overlapping gene sets.
BMC Bioinformatics,
13(73), 1-9.
https://doi.org/10.1186/1471-2105-13-73
Sjögren, A.
, Vajta, G., Knudsen, H., Lundin, K. & Hamberger, L. (1999).
Improved culture conditions for human embryos by use of novel submarine hyperbaric incubation system. I
Proc. The Second International Alpha Congress "Art, Science and Fiction", Abstract Book, No. P7 (s. 212)
Siwek, M.
, Buitenhuis, A. J., Cornelissen, S. J. B., Nieuwland, M. G. B., Bovenhuis, H., Parmentier, H. K., Crooijmans, R. P. M., Groenen, M. A. M. & van der Poel, J. J. (2004).
QTL for natural antibodies in two populations of laying hens. I
Book of Abstracts (s. 15)
Sivakumaran, A.
, Hebelstrup, K., Cristescu, S., Harren, F., Hall, M. A. & Mur , L. A. J. (2010).
Nitric oxide generation triggers ethylene mediated resistance against Botrytis cinerea in tomato (Solanum esculutemum) and Arabidopsis. Abstract fra 3rd International Plant NO Club, Olomouc, Tjekkiet.
http://pnog2010.upol.cz/Sironen, A.
, Thomsen, B., Andersson, M., Ahola, V. & Vilkki, J. (2006).
An intronic insertion in KLP2 result in aberrant splicing and causes the immotile short-tail sperm defect in the pig.
Proceedings of the National Academy of Sciences (PNAS),
103(13), 5006-5011.
https://doi.org/10.1073/pnas.0506318103Sironen, A.
, Thomsen, B., Karttunen, P., Andersson, M., Ahola, V. & Vilkki, J. (2006).
Identification of the genomic mutation causing the immotile short tail sperm defect and marker assisted selction in Finnish Yorkshire population. I
Book of abstract: CD communication 22-04, 4 pp (s. 195). WCGALP.
http://www.wcgalp8.org.br/wcgalp8/articles/paper/22_720-2086.pdfSironen, A.
, Hansen, J., Thomsen, B., Andersson, M., Vilkki, J., Toppari, J. & Kotaja, N. (2010).
Expression of SPEF2 During Mouse Spermatogenesis and Identification of IFT20 as an Interacting Protein.
Biology of Reproduction,
82(3), 580-590.
https://doi.org/10.1095/biolreprod.108.074971Sironen, A., Kotaja, N.
, Thomsen, B., Andersson, A. & Toppari, J. (2009).
Elucidation of the role of a cilia associated gene SPEF2 in sperm tail development. Poster-session præsenteret på Pig Genome III Conference, Hinxton, Cambridge, Storbritannien.
Simonsen, O.
, Badsberg, J. H., Kjeldsen, K., Møller-Madsen, B. & Heron, I. (1986).
The fall-off in serum concentration of tetanus antitoxin after primary and booster vaccination.
Acta pathologica, microbiologica, et immunologica Scandinavica. Section C, Immunology,
94, 77-82.
Simmelsgaard, S. E., Kristensen, K., Andersen, H. E., Grant, R., Jørgensen, J. O. & Østergaard, H. S. (2000).
Empirisk model til beregning af kvælstofudvaskning fra rodzonen: N-LES. DJF rapport Nr. 32
Silahtarogly, A. N., Jensen, L. R., Harboe, T. L.
, Horn, P. & Bendixen, C. (2004).
Sequencing and mapping of the porcine CCS gene.
Animal Genetics,
35(4), 353-354.
https://doi.org/10.1111/j.1365-2052.2004.01150.xSibbald, A. R., Maxwell, T. J., Griffiths, J. H.
, Hutchings, N. J., Taylor, C. M. A., Tabbush, P. M. & White, I. M. S. (1987).
Agroforestry research in the hills and uplands. I M. Bell & R. G. H. Bunce (red.),
Agriculture and Conservation in the Hills and Uplands (s. 74-77). Institute of Terrestrial Ecology Symposium No 23.
Si, J., Dai, D., Li, K.
, Fang, L. & Zhang, Y. (2023).
A Multi-Tissue Gene Expression Atlas of Water Buffalo (Bubalus bubalis) Reveals Transcriptome Conservation between Buffalo and Cattle.
Genes,
14(4), Artikel 890.
https://doi.org/10.3390/genes14040890Si, J., Dai, D., Gorkhali, N. A., Wang, M., Wang, S., Sapkota, S., Kadel, R. C., Sadaula, A., Dhakal, A., Faruque, M. O., Omar, A. I., Sari, E. M., Ashari, H., Dagong, M. I. A., Yindee, M., Rushdi, H. E., Elregalaty, H., Amin, A., Radwan, M. A. ... Zhang, Y. (2025).
Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis).
Advanced Science,
12(4), e2407615. Artikel 2407615.
https://doi.org/10.1002/advs.202407615Shrestha, M., Bai, Z., Gholipourshahraki, T., Hjelholt, A. J., Hu, S.
, Kjolby, M., Rohde, P. D.
& Sørensen, P. (2025).
Enhanced genetic fine mapping accuracy with Bayesian Linear Regression models in diverse genetic architectures.
PLoS Genetics,
21(7), 1-30. Artikel e1011783.
https://doi.org/10.1371/journal.pgen.1011783
Shirali, M., Strathe, A. B., Mark, T.
, Nielsen, B. & Jensen, J. (2017).
Joint analysis of longitudinal feed intake and single recorded production traits in pigs using a novel Horizontal model.
Journal of Animal Science,
95(3), 1050-1062.
https://doi.org/10.2527/jas.2016.0606
Shirali, M., Nielsen, B. J., Ostersen, T.
, Christensen, O. F., Madsen, P., Su, G. & Jensen, J. (2018).
Modelling of grouped recorded data for different population structures in pig breeding. Abstract fra 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Kroatien.
Shi, C.
, Ingvardsen, C., Thümmler, F., Wenzel, G., Melchinger, A. E.
& Lübberstedt, T. (2005).
Identification of genes differentially expressed in association with SCMV resistance in maize by combining SSH and cDNA array techniques.
Molecular Genetics and Genomics,
273(6), 450-461.
https://doi.org/10.1007/s00438-004-1103-8Shi, C., Thümmler, F., Wenzel, G., Melchinger, A. E.
& Lübberstedt, T. (2005).
Differential gene expression in association with SCMV resistance comparing resistant and susceptible maize inbreds.
Molecular Breeding,
16(2), 173-184.
https://doi.org/10.1007/s11032-005-8357-7
