Publikationer

Peer-reviewed publikationer ved QGG

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Jové-Juncà, T., Crespo-Piazuelo, D., Hernández-Banqué, C., González-Rodríguez, O., Fang, L., Quintanilla, R. & Ballester, M. (2025). Unveiling regulatory variants in the blood transcriptome and their association with immunity traits in pigs. Frontiers in Immunology, 16, Artikel 1582982. https://doi.org/10.3389/fimmu.2025.1582982

Lund, T. B., Christensen, T., Denver, S., Olsen, S. B., Nielsen, H. M., Kargo, M. & Sandøe, P. (2025). What Breeding Goal Should Organic Dairy Farmers Pursue? Results from a Willingness-To-Pay Study Among Consumers in Denmark, Germany, and Sweden. I Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Bind 39, s. 730)

Ollivier, R. & Asp, T. (2024). Identification of the genetic bases conferring stem rust resistance in perennial ryegrass. Poster-session præsenteret på Nordic Conference on Genetic Resources – Possibilities and Urgency, Malmö, Sverige.

Kristensen, P. S., Larsen, A. S., Deneken, G. & Nielsen, B. (2024). Cultivar mixtures in wheat. Poster-session præsenteret på QGG Breeding Network Day, Aarhus, Danmark.

Løvendahl, P., Milkevych, V., Krogh Nielsen, R., Bjerring, M., Manzanilla-Pech, C., Johansen, K., Difford, G. F. & Villumsen, T. M. (2024). A data-driven approach to the processing of sniffer-based gas emissions data from dairy cattle. Computers and Electronics in Agriculture, 227(Part 1), Artikel 109559. https://doi.org/10.1016/j.compag.2024.109559

Zhong, C., Li, X., Guan, D., Zhang, B., Wang, X., Qu, L., Zhou, H., Fang, L., Sun, C., Yang, N. & ChickenGTEx Consortium (2024). Age-dependent genetic architectures of chicken body weight explored by multidimensional GWAS and molQTL analyses. Journal of Genetics and Genomics, 51(12), 1423-1434. https://doi.org/10.1016/j.jgg.2024.09.003

Liu, H., Cui, T., Liu, H., Zhang, J., Luo, Q., Fei, S., Chen, K., Zhu, X., Zhu, C., Li, B., Fang, L., Zhao, J. & Ou, M. (2024). Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing. Scientific Data, 11(1), Artikel 1249. https://doi.org/10.1038/s41597-024-04075-5

Hansen, L. S., Laursen, S. F., Bahrndorff, S., Kargo, M., Sørensen, J. G., Sahana, G., Nielsen, H. M. & Kristensen, T. N. (2024). Estimation of genetic parameters for the implementation of selective breeding in commercial insect production. Genetics, selection, evolution : GSE, 56(1), 21. Artikel 21. https://doi.org/10.1186/s12711-024-00894-7

Bai, Z., Gholipourshahraki, T., Shrestha, M., Hjelholt, A., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2024). Evaluation of Bayesian Linear Regression derived gene set test methods. BMC Genomics, 25(1), Artikel 1236. https://doi.org/10.1186/s12864-024-11026-2

Zheng, S. L., Henry, A., Cannie, D., Lee, M., Miller, D., McGurk, K. A., Bond, I., Xu, X., Issa, H., Francis, C., De Marvao, A., Theotokis, P. I., Buchan, R. J., Speed, D., Abner, E., Adams, L., Aragam, K. G., Ärnlöv, J., Raja, A. A. ... COVIDsortium (2024). Genome-wide association analysis provides insights into the molecular etiology of dilated cardiomyopathy. Nature Genetics, 56(12), 2646-2658. Artikel 2254. https://doi.org/10.1038/s41588-024-01952-y

Sharif-Islam, M., van der Werf, J. H. J., Henryon, M., Chu, T. T., Wood, B. J. & Hermesch, S. (2024). Genotyping both live and dead animals to improve post-weaning survival of pigs in breeding programs. Genetics Selection Evolution, 56(1), Artikel 65. https://doi.org/10.1186/s12711-024-00932-4

Friedrich, J., Liu, S., Fang, L., Prendergast, J. & Wiener, P. (2024). Insights into trait-association of selection signatures and adaptive eQTL in indigenous African cattle. BMC Genomics, 25(1), Artikel 981. https://doi.org/10.1186/s12864-024-10852-8

Liu, P., Luo, N., Liu, D., Ying, F., Zhu, D., Wen, J., Zhao, G. & An, B. (2024). Integrating GWAS and transcriptomics to identify candidate genes conferring relative growth rate trait in white-feathered broiler. Poultry Science, 103(12), Artikel 104338. https://doi.org/10.1016/j.psj.2024.104338

Cai, Z., Iso-Touru, T., Sanchez, M.-P., Kadri, N., Bouwman, A. C., Chitneedi, P. K., MacLeod, I. M., Vander Jagt, C. J., Chamberlain, A. J., Gredler-Grandl, B., Spengeler, M., Lund, M. S., Boichard, D., Kühn, C., Pausch, H., Vilkki, J. & Sahana, G. (2024). Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance. Genetics, selection, evolution : GSE, 56(1), Artikel 54. https://doi.org/10.1186/s12711-024-00920-8

Liu, L., Yi, G., Yao, Y., Liu, Y., Li, J., Yang, Y., Liu, M., Fang, L., Mo, D., Zhang, L., Liu, Y., Niu, Y., Wang, L., Qu, X., Pan, Z., Wang, L., Chen, M., Fan, X., Chen, Y. ... Tang, Z. (2024). Multiomics analysis reveals signatures of selection and loci associated with complex traits in pigs. iMeta, 3(6), Artikel e250. https://doi.org/10.1002/imt2.250

Li, D., Wang, Y., Yuan, T., Cao, M., He, Y., Zhang, L., Li, X., Jiang, Y., Li, K., Sun, J., Lv, G., Su, G., Wang, Q., Pan, Y., Li, X., Jiang, Y., Yang, G., Groenen, M. A. M., Derks, M. F. L. ... Yu, T. (2024). Pangenome and genome variation analyses of pigs unveil genomic facets for their adaptation and agronomic characteristics. iMeta, 3(6), Artikel e257. https://doi.org/10.1002/imt2.257

Yousaf, M. F., Demirel, U., Naeem, M., Naawe, E. K. & Caliskan, M. E. (2024). SNP Markers Associated with Some Root, Stolon, and Tuber Traits in Tetraploid Potatoes (Solanum tuberosum L.) Grown Under Diverse Growing Systems. Potato Research, 67(4), 1735-1753. https://doi.org/10.1007/s11540-024-09718-z

Sahana, G., (2024). Bidrag til OECD's undersøgelse om unikke koder ('unique identifiers') til genetisk modificerede dyr, Nr. 2024-0750791, 9 s., nov. 21, 2024. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Bordbar, F., Jensen, J., Wadood, A. A. & Yao, Z. (2024). Linkage Disequilibrium Decay in Selected Cattle Breeds. Animals, 14(22), Artikel 3317. https://doi.org/10.3390/ani14223317

Slagboom, M., Nielsen, H. M., Kargo, M., Henryon, M. & Hansen, L. S. (2024). The effect of phenotyping, adult selection, and mating strategies on genetic gain and rate of inbreeding in black soldier fly breeding programs. Genetics Selection Evolution, 56(1), Artikel 71. https://doi.org/10.1186/s12711-024-00938-y

Gholipourshahraki, T., Bai, Z., Shrestha, M., Hjelholt, A., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2024). Evaluation of Bayesian Linear Regression models for gene set prioritization in complex diseases. PLoS Genetics, 20(11), Artikel e1011463. https://doi.org/10.1371/journal.pgen.1011463

Nagy, I., Malinowska, M. & Asp, T. (2024). Semi-automated image analysis and genome-wide association studies of root architecture and early root development in faba bean and white clover. SEGES Innovation. https://www.landbrugsinfo.dk/-/media/landbrugsinfo/public/a/5/6/report_work_with_root_arcitecture.pdf

Smith, A. G., Malinowska, M., Ruud, A. K., Janss, L., Krusell, L., Jensen, J. D. & Asp, T. (2024). Automated seminal root angle measurement with corrective annotation. AoB Plants, 16(5), Artikel plae046. https://doi.org/10.1093/aobpla/plae046

Schoen, D. J. & Speed, D. (2024). The heritability of fitness in a wild annual plant population with hierarchical size structure. Evolution, 78(10), 1739-1745. https://doi.org/10.1093/evolut/qpae112

Johansen, K., Vestergaard, M., Spleth, P., Hein, L., Nielsen, H. M. & Kargo, M. (2024). Growth and feed efficiency of Nordic Red Dairy Cattle, Holstein, and their F1 crossbreeds when limiting feed energy concentration in prepubertal heifers. Journal of Dairy Science, 107(10), 7973-7982. https://doi.org/10.3168/jds.2024-24904

De Pol, F., Baranowski, M., Neumann, C., Trampari, S., Nissen, P. & Pérez, J. (2024). Simulation and modelling of the detergent corona around the membrane protein MhsT based on SAXS data. Journal of Applied Crystallography, 57, 1415-1425. https://doi.org/10.1107/S1600576724006721

Stefanucci, L., Moslemi, C., Tomé, A. R., Virtue, S., Bidault, G., Gleadall, N. S., Watson, L. P. E., Kwa, J. E., Burden, F., Farrow, S., Banasik, K., Bay, J., Boldsen, J. K., Brodersen, T., Brunak, S., Burgdorf, K., Chalmer, M. A., Didriksen, M., Dinh, K. M. ... Frontini, M. (2024). SMIM1 absence is associated with reduced energy expenditure and excess weight. Med, 5(9), 1083-1095.e6. https://doi.org/10.1016/j.medj.2024.05.015

Tilhou, N. W., Lee, D. K., Ramstein, G. P., Poudel, H. P., Edme, S. J. & Casler, M. D. (2024). Empirical comparison of genomic selection to phenotypic selection for biomass yield of switchgrass. Agronomy Journal, 116(5), 2318-2327. https://doi.org/10.1002/agj2.21639

Yang, H., Yang, L., Qian, J., Xu, L., Lin, L. & Su, G. (2024). Information of Growth Traits Is Helpful for Genetic Evaluation of Litter Size in Pigs. Animals, 14(18), Artikel 2669. https://doi.org/10.3390/ani14182669

Stephansen, R. B., Martin, P., Manzanilla-Pech, C. I. V., Giagnoni, G., Madsen, M. D., Ducrocq, V., Weisbjerg, M. R., Lassen, J. & Friggens, N. C. (2024). Review: Improving residual feed intake modelling in the context of nutritional- and genetic studies for dairy cattle. ANIMAL, 18(9), Artikel 101268. https://doi.org/10.1016/j.animal.2024.101268

Cai, Z., Hansen, L. S., Laursen, S. F., Nielsen, H. M., Bahrndorff, S., Tomberlin, J. K., Kristensen, T. N., Sørensen, J. G. & Sahana, G. (2024). Whole-genome sequencing of two captive black soldier fly populations: Implications for commercial production. Genomics, 116(5), Artikel 110891. https://doi.org/10.1016/j.ygeno.2024.110891

Kongsted, H., Krogh, M. A., Poulsen, B. G. & Christensen, O. F. (2024). Afdækning af eksisterende viden vedrørende variation i sæsonbestemt sodødelighed og genetisk variation i sodødelighed. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Pedersen, L. J., Kongsted, H., Su, G. & Christensen, O. F. (2024). Tiltag som kan forbedre pattegriseoverlevelsen. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Tenhunen, S., Thomasen, J. R., Sørensen, L. P., Berg, P. & Kargo, M. (2024). Genomic Analysis of Inbreeding and Coancestry in Nordic Jersey and Holstein Dairy Cattle Populations. Journal of Dairy Science, 107(8), 5897-5912. https://doi.org/10.3168/jds.2023-24553

Tang, X., Liu, P., Luo, N., Wen, J., Li, H., Zhao, G. & An, B. (2024). Mining Candidate Genes and Identifying Risk Factors for Leg Disease in Broilers: A Mendelian Randomization Study. International Journal of Molecular Sciences , 25(16), Artikel 8890. https://doi.org/10.3390/ijms25168890

Liu, H., Christensen, O. F., Byskov, K., Eiríksson, J. H., Milkevych, V., Thomasen, J. R. & Karaman, E. (2024). Evaluating different software and methodologies for tracing breed origin of alleles in crossbred dairy cattle.

Nielsen, V. H. & Kargo, M., (2024). Udfyldelse af FAOs spørgeskema til "State of The World" rapport nr. 3 - Danmarks bidrag, Nr. 2024-0704273, 167 s., jul. 12, 2024. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Zaalberg, R. M., Nielsen, H. M., Noer, N. K., Schou, T. M., Jensen, K., Thormose, S., Kargo, M. & Slagboom, M. (2024). A bio-economic model for estimating economic values of important production traits in the black soldier fly (Hermetia illucens). Journal of Insects as Food and Feed, 10(8), 1411-1421. https://doi.org/10.1163/23524588-00001126

Chu, T. T., Kristensen, P. S. & Jensen, J. (2024). Simulation of functional additive and non-additive genetic effects using statistical estimates from quantitative genetic models. Heredity, 133(1), 33-42. https://doi.org/10.1038/s41437-024-00690-5

Roy, D. B., Alison, J., August, T. A., Bélisle, M., Bjerge, K., Bowden, J. J., Bunsen, M. J., Cunha, F., Geissmann, Q., Goldmann, K., Gomez-Segura, A., Jain, A., Huijbers, C., Larrivée, M., Lawson, J. L., Mann, H. M., Mazerolle, M. J., McFarland, K. P., Pasi, L. ... Høye, T. T. (2024). Towards a standardized framework for AI-assisted, image-based monitoring of nocturnal insects. Philosophical Transactions of the Royal Society B: Biological Sciences, 379(1904), Artikel 20230108. https://doi.org/10.1098/rstb.2023.0108

Li, T., Xu, H., Teng, S., Suo, M., Bahitwa, R., Xu, M., Qian, Y., Ramstein, G. P., Song, B., Buckler, E. S. & Wang, H. (2024). Modeling 0.6 million genes for the rational design of functional cis-regulatory variants and de novo design of cis-regulatory sequences. Proceedings of the National Academy of Sciences of the United States of America, 121(26), Artikel e2319811121. https://doi.org/10.1073/pnas.2319811121

Zhao, F., Xie, R., Fang, L., Xiang, R., Yuan, Z., Liu, Y. & Wang, L. (2024). Analysis of 206 whole-genome resequencing reveals selection signatures associated with breed-specific traits in Hu sheep. Evolutionary Applications, 17(6), Artikel e13697. https://doi.org/10.1111/eva.13697

Jensen, I. T., Janss, L., Radutoiu, S. & Waagepetersen, R. (2024). Compositionally aware estimation of crosscorrelations for microbiome data. PLoS One, 19(6), Artikel e0305032. https://doi.org/10.1371/journal.pone.0305032

Giagnoni, G., Lassen, J., Lund, P., Foldager, L., Johansen, M. & Weisbjerg, M. R. (2024). Feed intake in housed dairy cows: validation of a three-dimensional camera−based feed intake measurement system. ANIMAL, 18(6), Artikel 101178. https://doi.org/10.1016/j.animal.2024.101178

Olesen, J. E., Lund, P., Feilberg, A., Villumsen, T. M., Kristensen, H. L., Winding, A., Zak, D. H., Andersen, M. N., Lærke, P. E., Petersen, S. O., Elsgaard, L., Jensen, J. L., Eriksen, J., Munkholm, L. J., Nørgaard, J. V., Weisbjerg, M. R., Børsting, C. F., Kristensen, N. B., Østergaard, S. ... Poulsen, N. A. (2024). Estimering af videns- og finansieringsbehov for opnåelse af klimamål i 2030. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Legarra, A., Bermann, M., Mei, Q. & Christensen, O. F. (2024). Redefining and interpreting genomic relationships of metafounders. Genetics, selection, evolution : GSE, 56(1), Artikel 34. https://doi.org/10.1186/s12711-024-00891-w

Legarra, A., Bermann, M., Mei, Q. & Christensen, O. F. (2024). Estimating genomic relationships of metafounders across and within breeds using maximum likelihood, pseudo-expectation-maximization maximum likelihood and increase of relationships. Genetics Selection Evolution, 56(1), 35. Artikel 35. https://doi.org/10.1186/s12711-024-00892-9

Tang, Y., Zhang, J., Li, W., Liu, X., Chen, S., Mi, S., Yang, J., Teng, J., Fang, L. & Yu, Y. (2024). Identification and characterization of whole blood gene expression and splicing quantitative trait loci during early to mid-lactation of dairy cattle. BMC Genomics, 25(1), Artikel 445. https://doi.org/10.1186/s12864-024-10346-7

Yang, L., Yin, H., Bai, L., Yao, W., Tao, T., Zhao, Q., Gao, Y., Teng, J., Xu, Z., Lin, Q., Diao, S., Pan, Z., Guan, D., Li, B., Zhou, H., Zhou, Z., Zhao, F., Wang, Q., Pan, Y. ... Liu, G. E. (2024). Mapping and functional characterization of structural variation in 1060 pig genomes. Genome Biology, 25(1), Artikel 116. https://doi.org/10.1186/s13059-024-03253-3

Zaalberg, R. M., Clasen, J. B., Bovbjerg, H., Jensen, J., Villumsen, T. M. & Chu, T. T. (2024). The effects of phenotyping and genotyping strategies, and the use of conventional or organic sires on genetic gain in an organic pig population. Livestock Science, 283, Artikel 105456. https://doi.org/10.1016/j.livsci.2024.105456

Kazemi Naeini, M., Akbarzadeh, M., Kazemi, I., Speed, D. & Hosseini, S. M. (2024). Using the Bayesian variational spike and slab model in a genome-wide association study for finding associated loci with bipolar disorder. Annals of Human Genetics, 88(3), 212-246. https://doi.org/10.1111/ahg.12538

Olesen, J. E., Andersen, M. N., Greve, M. H., Sørensen, J. T., Nørgaard, J. V., Weisbjerg, M. R., Henriksen, B. I. F., Rasmussen, M. D., Villumsen, T. M., Ottosen, C.-O., Kristensen, H. L. & Jensen, M., (2024). Oplistning af forskningsspørgsmål og -emner relevant for klimatilpasning af landbruget, Nr. 2024-0666449, 15 s., apr. 25, 2024. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Song, H., Chu, J., Li, W., Li, X., Fang, L., Han, J., Zhao, S. & Ma, Y. (2024). A Novel Approach Utilizing Domain Adversarial Neural Networks for the Detection and Classification of Selective Sweeps. Advanced Science, 11(14), Artikel 2304842. https://doi.org/10.1002/advs.202304842

Speed, D. & Evans, D. M. (2024). Estimating disease heritability from complex pedigrees allowing for ascertainment and covariates. American Journal of Human Genetics, 111(4), 680-690. https://doi.org/10.1016/j.ajhg.2024.02.010

Gebreyesus, G., Secher, J. B., Lund, M. S., Kupisiewicz, K., Ivask, M., Hallap, T., Pärn, P. & Su, G. (2024). Genetic parameters for bull effects on in vitro embryo production (IVP) and relationship between semen quality traits and IVP performance. Animal Reproduction Science, 263, 107436. Artikel 107436. https://doi.org/10.1016/j.anireprosci.2024.107436

Lund, P., Hojberg, O., Børsting, C. F., Nielsen, M. O., Villumsen, T. M. & Weisbjerg, M. R. (2024). Kan koen blive klimavenlig? Køer og andre drøvtyggere producerer metan, men gennem fodringsstrategier kan emissionen reduceres. Dansk Kemi, 105(2), 16-18.

Bernstorff, M., Vistisen, S. T. & Enevoldsen, K. C. (2024). Natural language processing for electronic health records in anaesthesiology: an introduction to clinicians with recommendations and pitfalls. Journal of Clinical Monitoring and Computing, 38(2), 241-245. https://doi.org/10.1007/s10877-024-01128-3

Tao, K., Jensen, I. T., Zhang, S., Villa-Rodríguez, E., Blahovska, Z., Salomonsen, C. L., Martyn, A., Björgvinsdóttir, Þ. N., Kelly, S., Janss, L., Glasius, M., Waagepetersen, R. & Radutoiu, S. (2024). Nitrogen and Nod factor signaling determine Lotus japonicus root exudate composition and bacterial assembly. Nature Communications, 15(1), Artikel 3436. https://doi.org/10.1038/s41467-024-47752-0

Olesen, J. E., Andersen, M. N., Lund, P., Feilberg, A., Villumsen, T. M., Kristensen, H. L., Nielsen, O.-K., Zak, D. H., Lærke, P. E., Nørgaard, J. V., Kidmose, U., Jensen, M., Mogensen, L. & Knudsen, M. T. (2024). Finansieringsbehov til afdækning af centrale vidensbehov for en mere klimavenlig landbrugsproduktion. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Hansen, L. S., Laursen, S. F., Bahrndorff, S., Kargo, M., Sørensen, J. G., Sahana, G., Nielsen, H. M. & Kristensen, T. N. (2024). Dataset: Estimation of genetic parameters for the implementation of selective breeding in commercial insect production. Datasæt, Dryad Digital Repository. https://doi.org/10.5061/dryad.kwh70rzc5

Rachah, A., Løvendahl, P., Reksen, O. & Kielland, C. (2024). Data visualization techniques for the identification of missing values in dairy farming. I Y. Belhamadia & M. Seaid (red.), PROCEEDINGS OF THE NINTH INTERNATIONAL CONFERENCE ON MODELING, SIMULATION AND APPLIED OPTIMIZATION (1 udg., Bind 3034). AIP Publishing LLC. https://doi.org/10.1063/5.0195158

Noer, N. K., Rohde, P. D., Sørensen, P., Bahrndorff, S. & Kristensen, T. N. (2024). Diurnal variation in genetic parameters for locomotor activity in Drosophila melanogaster assessed under natural thermal conditions. Journal of Evolutionary Biology, 37(3), 336-345. https://doi.org/10.1093/jeb/voae020

Shewale, A., Mokhade, A., Lipare, A. & Bokde, N. D. (2024). Efficient Techniques for Residential Appliances Scheduling in Smart Homes for Energy Management Using Multiple Knapsack Problem. Arabian Journal for Science and Engineering, 49(3), 3793-3813. https://doi.org/10.1007/s13369-023-08178-w

Rovere, G., de Los Campos, G., Gebreyesus, G., Savegnago, R. P. & Buitenhuis, A. J. (2024). Energy balance of dairy cows predicted by mid-infra-red spectra data of milk using Bayesian approaches. Journal of Dairy Science, 107(3), 1561-1576. https://doi.org/10.3168/jds.2023-23772

Degalez, F., Charles, M., Foissac, S., Zhou, H., Guan, D., Fang, L., Klopp, C., Allain, C., Lagoutte, L., Lecerf, F., Acloque, H., Giuffra, E., Pitel, F. & Lagarrigue, S. (2024). Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues. Scientific Reports, 14(1), Artikel 6588. https://doi.org/10.1038/s41598-024-56705-y

Houlahan, K., Schenkel, F. S., Miglior, F., Jamrozik, J., Stephansen, R. B., González-Recio, O., Charfeddine, N., Segelke, D., Butty, A. M., Stratz, P., VandeHaar, M. J., Tempelman, R. J., Weigel, K., White, H., Peñagaricano, F., Koltes, J. E., Santos, J. E. P., Baldwin, R. L. & Baes, C. F. (2024). Estimation of genetic parameters for feed efficiency traits using random regression models in dairy cattle. Journal of Dairy Science, 107(3), 1523-1534. https://doi.org/10.3168/jds.2022-23124

Tao, H., Abba, S. I., Al-Areeq, A. M., Tangang, F., Samantaray, S., Sahoo, A., Siqueira, H. V., Maroufpoor, S., Demir, V., Dhanraj Bokde, N., Goliatt, L., Jamei, M., Ahmadianfar, I., Bhagat, S. K., Halder, B., Guo, T., Helman, D. S., Ali, M., Sattar, S. ... Yaseen, Z. M. (2024). Hybridized artificial intelligence models with nature-inspired algorithms for river flow modeling: A comprehensive review, assessment, and possible future research directions. Engineering Applications of Artificial Intelligence, 129, Artikel 107559. https://doi.org/10.1016/j.engappai.2023.107559

Wang, A., Su, G., Brito, L. F., Zhang, H., Shi, R., Liu, D., Guo, G. & Wang, Y. (2024). Investigating the relationship between fluctuations in daily milk yield as resilience indicators and health traits in Holstein cattle. Journal of Dairy Science, 107(3), 1535-1548. https://doi.org/10.3168/jds.2023-23495

Baghooee, M. & Geissmann, Q. (2024). Size-aware deep-learning model for image-based insect classification. 68. Abstract fra AI and Biology, Heidelberg, Tyskland.

van Staaveren, N., de Oliveira, H., Houlahan, K., Chud, T., Oliveira, G., Hailemariam, D., Kistemaker, G., Miglior, F., Plastow, G., Schenkel, F. S., Cerri, R., Sirard, M.-A., Stothard, P., Pryce, J., Butty, A., Stratz, P., Abdalla, E., Segelke, D., Stamer, E. ... Baes, C. F. (2024). The Resilient Dairy Genome Project: a general overview of methods and objectives related to feed efficiency and methane emissions. Journal of Dairy Science, 107(3), 1510-1522. https://doi.org/10.3168/jds.2022-22951

Paina, C., Fois, M., Asp, T., Jensen, J., Hansen, P. B. & Rohde, P. D. (2024). The soil microbiome of Lolium perenne L. depends on host genotype, is modified by nitrogen level and varies across season. Scientific Reports, 14(1), Artikel 5767. https://doi.org/10.1038/s41598-024-56353-2

Bokde, N. D., Patil, P. K., Sengupta, S., Sawant, M. & Feijóo-Lorenzo, A. E. (2024). VedicDateTime: An R package to implement Vedic calendar system. Multimedia Tools and Applications, 83(11), 32141-32157. https://doi.org/10.1007/s11042-023-16553-w

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2024). Computer-vision based prediction of body traits and larval sex in black soldier fly. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Chen, S., Liu, S., Shi, S., Yin, H., Tang, Y., Zhang, J., Li, W., Liu, G., Qu, K., Ding, X., Wang, Y., Liu, J., Zhang, S., Fang, L. & Yu, Y. (2024). Cross-Species Comparative DNA Methylation Reveals Novel Insights into Complex Trait Genetics among Cattle, Sheep, and Goats. Molecular Biology and Evolution, 41(2), Artikel msae003. https://doi.org/10.1093/molbev/msae003

Muchina, P., Kinyua, J., Khamis, F., MBI Tanga, C., Cai, Z., Gebreyesus, G. & Sahana, G. (2024). Unraveling genetic diversity and population structure of black soldier fly (Hermetia illucens) in Kenya and Uganda. 11. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Londhe, D. S., Katpatal, Y. B., Mukesh, M. S. & Bokde, N. D. (2024). Vegetation dynamics and its driving factors in agro-climatic zones of Upper Bhima Sub-basin, Western India. International Journal of Environmental Science and Technology, 21(3), 2367-2382. https://doi.org/10.1007/s13762-023-05094-2

Madsen, M. D., Kristensen, P. S., Mahmood, K., Thach, T., Mohlfeld, M., Orabi, J., Sarup, P., Jahoor, A., Hovmøller, M. S., Rodriguez-Algaba, J. & Jensen, J. (2024). Scald resistance in hybrid rye (Secale cereale): genomic prediction and GWAS. Frontiers in Plant Science, 15, Artikel 1306591. https://doi.org/10.3389/fpls.2024.1306591

Tessema, B. B., Raffo, M. A., Guo, X., Svane, S. F., Krusell, L., Jensen, J. D., Ruud, A. K., Malinowska, M., Thorup-Kristensen, K. & Jensen, J. (2024). Genomic prediction for root and yield traits of barley under a water availability gradient: a case study comparing different spatial adjustments. Plant Methods, 20(1), Artikel 8. https://doi.org/10.1186/s13007-023-01121-y

Westwood, M. L., Geissmann, Q., O'Donnell, A. J., Rayner, J., Schneider, W., Zuk, M., Bailey, N. W. & Reece, S. E. (2024). Machine learning reveals singing rhythms of male Pacific field crickets are clock controlled. Behavioral Ecology, 35(1), Artikel arad098. https://doi.org/10.1093/beheco/arad098

The PigGTEx Consortium (2024). A compendium of genetic regulatory effects across pig tissues. Nature Genetics, 56(1), 112-123. https://doi.org/10.1038/s41588-023-01585-7

Bouquet, A. E. R., Slagboom, M., Thomasen, J. R., Friggens, N. C., Kargo, M. & Puillet, L. (2024). Combined mechanistic and genetic modelling to benchmark body reserve traits as proxies of dairy cows’ lifetime efficiency in grass-based production systems. Animal, 18(1), Artikel 101035. https://doi.org/10.1016/j.animal.2023.101035

Nawoya, S., Ssemakula, F., Akol, R., Geissmann, Q., Karstoft, H., Bjerge, K., Mwikirize, C., Katumba, A. & Gebreyesus, G. (2024). Computer vision and deep learning in insects for food and feed production: A review. Computers and Electronics in Agriculture, 216, Artikel 108503. https://doi.org/10.1016/j.compag.2023.108503

Mukherjee, A., Cai, Z. & Mukherjee, S. (2024). Editorial: Application of genomics in livestock populations under selection or conservation. Frontiers in Genetics, 15, Artikel 1363839. https://doi.org/10.3389/fgene.2024.1363839

Zeng, H., Zhang, W., Lin, Q., Gao, Y., Teng, J., Xu, Z., Cai, X., Zhong, Z., Wu, J., Liu, Y., Diao, S., Wei, C., Gong, W., Pan, X., Li, Z., Huang, X., Chen, X., Du, J., Zhao, F. ... PigGTEx Consortium (2024). PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs. Nucleic Acids Research, 52(D1), D980-D989. https://doi.org/10.1093/nar/gkad1080

Zaalberg, R. M., Nielsen, H. M., Noer, N. K., Schou, T. M., Jensen, K., Thormose, S., Kargo, M. & Slagboom, M. (2024). A bio-economic model for estimating economic values of important production traits in the black soldier fly (Hermetia illucens). I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 633-633). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Kristensen, T. N., Laursen, S. F. & Hansen, L. S. (2024). Advances in sustainable food production through optimization of insect farming. EU Research, 40, 28-29. https://issuu.com/euresearcher/docs/optimization_of_insect_production_for_animal_feed_

Akol, R., Katumba, A., Mwikirize, C., Nakimbugwe, D., Ssemakula, F., Nawoya, S., Geoffrey, S. & Gebreyesus, G. (2024). Application of emerging technologies in insect monitoring and rearing. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Cheruiyot Bett , R., Gebreyesus, G., Maweu, A., Nkirote Kunyanga , C., Abigael, N., Philip, T., Geoffrey, S., MBI Tanga, C. & Sahana, G. (2024). Characterization of black soldier fly production systems and traits preferences in Kenya. 23. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Jensen, K., Thormose, S., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2024). Consecutive mating of black soldier fly males to produce full- and half-sibling offspring. Abstract fra EAAP Florence, Italy.

Nielsen, H. M. & Kargo, M. (2024). Conservation of Danish Landrace pigs 1970 using optimum contribution selection. Poster-session præsenteret på NordGen’s farm animal conference , Uppsala, Sverige.

Jensen, K., Thormose, S. F., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Hansen, L. S., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2024). Controlled and polygynous mating in the black soldier fly: advancing breeding programs through quantitative genetic designs. https://doi.org/10.1101/2024.09.09.611978

Nielsen, H. M., Hansen, L. S., Gebreyesus, G., Sahana, G., Zaalberg, R. M., Kargo, M., Slagboom, M., Noer, N. K., Schou, T. M., Jensen, K., Sørensen, J. G., Laursen, S. F., Bahrndorff, S. & Kristensen, T. N. (2024). Danish initiatives in selective breeding in insects. Abstract fra Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf

Sahana, G. & Cai, Z. (2024). Decoding the Genetic Dialogue: Rumen Microbiome and Host Genome Interaction in Enteric Methane Emission. I Book of Abstracts of the 75 th Annual Meeting of the European Federation of Animal Science (s. 655-655). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Nielsen, H. M., Thomassen, J. R., Østergaard, S., Sørensen, L. P. & Kargo, M. (2024). Economic values for organic dairy cattle production systems in Denmark. I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 177-177). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Stephansen, R. B., Gebreyesus, G., Sahana, G. & Lassen, J. (2024). Ensemble Learner Enhances Prediction Accuracies for Extreme Body Condition Classes in Jersey Dairy Cattle in a 3D Image High-Throughput System. I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 399). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Thomasen, J. R., Hjortø, L., Byskov, K., Bouquet, A. E. R. & Fogh, A. (2024). Experiences and future expectations for breeding programs targeting beef on dairy production systems. I Teagasc | Dairy Calf-to-Beef Conference 2024 Proceedings (s. 80-82) https://www.teagasc.ie/media/website/publications/2024/Dairy-Calf-to-Beef-Conference-Proceedings.pdf

Sahana, G., Gebreyesus, G., Cheruiyot Bett , R., Kinyua, J., Roos, N., MBI Tanga, C., Mwikirize, C., Akol, R., Khamis, F. M., Karstoft, H., Bjerge, K., Nkirote Kunyanga , C., Hansen, L. S., Nielsen, H. M., Lund, M. S., Geoffrey, S., Walusimbi, S. & Nakimbugwe, D. (2024). FLYgene: Advancing Sustainable Breeding Programs and Genomic Tools for Black Soldier Fly (Hermetia illucens) in Kenya and Uganda. I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 633-633) https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Georgalas, M. D., Hansen, L. S., Laursen, S. F., Bahrndorff, S., Sørensen, J. G., Kargo, M., Kristensen, T. N., Guldbrandtsen, B. & Nielsen, H. M. (2024). Genetic parameters for house fly larval performance in two dietary environments. I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 634-634). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

Lajevardi, R. K., Sahana, G., Manzanilla-Pech, C., Løvendahl, P. & Villumsen, T. M. (2024). Genetic parameters of Methane emission in Danish Jersey dairy cows. I Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (s. 689-689). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf

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