Publikationer

Peer-reviewed publikationer ved QGG

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Teng, J., Zhao, X., Yan, Q., Yang, J., Pei, F., Zhang, X., Duan, C., Chen, Z., Xu, Q., Liu, Y., Xue, G., Xia, S., Wang, H., Gu, Y., Fang, L., Liu, H., Gao, H., An, J., Jiang, L. ... Zhang, Q. (2026). Integrative analysis of GWAS, Bayesian fine-mapping, Mendelian randomization and colocalization reveals genetic determinants underlying milk-related traits in dairy cattle. Genetics Selection Evolution, 58(1), Artikel 4. https://doi.org/10.1186/s12711-025-01028-3

Hao, D., Han, H., Li, D., Sun, Y., Wang, Y., Yan, H., Li, G., Liu, H., Li, B., Li, F. & Liu, W. (2026). Lactobacillus salivarius SNK-6 improves egg quality, yolk nutrient composition, and yolk flavor profile in laying hens via modulation of tissue metabolites and Cecal microbiomes. Poultry Science, 105(5), Artikel 106649. https://doi.org/10.1016/j.psj.2026.106649

An, B., Luo, N., Liu, P., Wei, L., Fang, L., Wen, J. & Zhao, G. (2026). Integrative meta-GWAS and lipidomics reveal genetic regulators of nutritional fatty acids and lipid metabolites in chicken liver lipid accumulation. Journal of Agriculture and Food Research, 27, Artikel 102673. https://doi.org/10.1016/j.jafr.2026.102673

Verweij, J. W., Nielsen, H. M. & Buitenhuis, A. J. (2026). Comparative analysis of genetic diversity in rainbow trout (Oncorhynchus mykiss) populations from Denmark and Finland using SNP data. Aquaculture, 616, Artikel 743706. https://doi.org/10.1016/j.aquaculture.2026.743706

Zhang, H., Windhorst, A., Bornhofen, E., Tulpova, Z., Novak, P., Macas, J., Simkova, H., Nadzieja, M., Kim, J. M., Cram, D., Cao, Y., Konkin, D. J. F., Sass, O., Welna, G., Himmelbach, A., Mascher, M., Link, W., Kwon, S.-J., Yang, T.-J. ... Jayakodi, M. (2026). Allelic variation at a single locus distinguishes spring and winter faba beans. Nature Genetics. Advance online publication. https://doi.org/10.1038/s41588-026-02524-y

Liu, H., Christensen, O. F., Eiríksson, J. H., Boichard, D., Milkevych, V., Thomasen, J. R. & Karaman, E. (2026). Accuracy of local ancestry inference and its impact on genomic prediction in admixed dairy cattle populations. Journal of Dairy Science, 109(3), 2743-2758. https://doi.org/10.3168/jds.2025-27019, https://doi.org/10.3168/jds.2025-27019

Svenning, A., Mougeot, G., Alison, J., Chevalier, D., Molina, N. C., Ong, S. Q., Bjerge, K., Carrillo, J., Høye, T. T. & Geissmann, Q. (2026). A general method for detection and segmentation of terrestrial arthropods in images. Methods in Ecology and Evolution, 17(3), 727-739. https://doi.org/10.1111/2041-210x.70249

Muchina, P., Kinyua, J., Khamis, F., Tanga, C. M., Satti, M. A., Gebreyesus, G., Sahana, G. & Cai, Z. (2026). A haplotype reference panel and genotype imputation framework for the black soldier fly (Hermetia illucens). Genomics, 118(2), Artikel 111206. https://doi.org/10.1016/j.ygeno.2026.111206

Stephansen, R. B., Poulsen, B. G., Lassen, J. & Jensen, J. (2026). Genetic associations between feed efficiency traits and breeding goal traits in Nordic Holsteins. JDS Communications , 7(2), 198-203. https://doi.org/10.3168/jdsc.2025-0898

Bordbar, F., Jensen, J., Wadood, A. A., Jebessa, E., Cai, B. & Nie, Q. (2026). Genomic insights into egg production in Mahuang chickens: identification of key loci and candidate genes through whole genome sequencing and validation. Animal : an international journal of animal bioscience, 20(3), 101762. Artikel 101762. https://doi.org/10.1016/j.animal.2026.101762, https://doi.org/10.1016/j.animal.2026.101762

Muchina, P., Kinyua, J., Khamis, F., Tanga, C. M., Bett, R., Ssepuuya, G., Nakimbugwe, D., Sinding, M.-H. S., Gebreyesus, G., Sahana, G. & Cai, Z. (2026). Human-mediated dispersal and breeding reshape global genomic patterns in black soldier flies. Genomics, 118(2), 111208. Artikel 111208. https://doi.org/10.1016/j.ygeno.2026.111208, https://doi.org/10.1016/j.ygeno.2026.111208

Ollivier, R., Robin, S., Galland, M., Paulmann, M. K., Shih, P. Y., Morlière, S., Gershenzon, J., Kunert, G., Pilet-Nayel, M. L., Simon, J. C. & Sugio, A. (2026). Pea transcriptional and phytohormonal responses to adapted and non-adapted aphid biotypes at early stages of infestation. Scientific Reports, 16, Artikel 8456. https://doi.org/10.1038/s41598-026-38098-2

Chen, L., Li, H., Teng, J., Wang, Z., Qu, X., Chen, Z., Cai, X., Zeng, H., Bai, Z., Li, J., Pan, X., Yan, L., Wang, F., Lin, L., Luo, Y., Sahana, G., Lund, M. S., Ballester, M., Crespo-Piazuelo, D. ... Yi, G. (2026). Construction of a Multitissue Cell Atlas Reveals Cell-Type-Specific Regulation of Molecular and Complex Phenotypes in Pigs. Advanced Science, 13(8), Artikel e04961. https://doi.org/10.1002/advs.202504961

Brix, G. S., Rasmussen, L. D., Rohde, P. D., Pagidipati, N. J., Shah, S. H., Møller, P. L., Schmidt, S. E., Kwee, L. C., Douglas, P. S., Foldyna, B., Nyegaard, M., Bøttcher, M. & Winther, S. (2026). Incorporation of Lipoprotein(a) levels improves calibration of pre-test likelihood estimates of obstructive coronary artery disease. European Heart Journal Cardiovascular Imaging. Advance online publication. https://doi.org/10.1093/ehjci/jeag021

Bouquet, A. E. R., Meinert, C. Æ. & Kargo, M. (2026). Optimizing selection decisions in the Danish Dairy Shorthorn conservation program. DCA - Nationalt Center for Fødevarer og Jordbrug. Advisory report from DCA – National Center for Food and Agriculture

Foldager, L., Lindgren, S. D., Gebreyesus, G. & Thodberg, K. (2026). Halevækst for ukuperede og kuperede svin fra fødsel til slagt: var den kuperet kortere end lovgivningen tillader? I P. Linde (red.), Symposium i Anvendt Statistik 2026 (s. 184-193). Fødevare- og Ressourceøkonomisk Institut, Københavns Universitet & Symposium i Anvendt Statistik.

Lund, P., Maigaard, M., Jensen, M. B., Brask, M. J., Thorsteinsson, M., Stephansen, R. B., Nielsen, H. M., Villumsen, T. M., Nørgaard, J. V., Jensen, S. K., Stødkilde-Jørgensen, L., Hansen, N. P. & Weisbjerg, M. R., (2026). TRL for nye teknologier og tiltag, som potentielt kan reducere udledningen af metan eller andre klimagasser indenfor Fødevarestyrelsens ressort, Nr. 2025-0917878, 25 s., jan. 23, 2026. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Thodberg, K., Gebreyesus, G. & Foldager, L. (2026). Måling af halelængde hos grise med kuperede haler i deres vækstperiode. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Kragh-Schwarz, M. V., Birkedal, H., Birk, J. O., Trtik, P., Strobl, M., Nielsen, L. P. & Bentien, A. (2026). Operando neutron imaging of an alkaline electrolysis cell for mapping gas distributions. Journal of Power Sources, 662, Artikel 238525. https://doi.org/10.1016/j.jpowsour.2025.238525

Liu, P., An, B., Zheng, J., Wang, Q., Yang, Z., Li, Z., Liu, D., Ying, F., Wen, J., Fang, L. & Zhao, G. (2026). Integrative Omics Defines Metabolic Biomarkers and Genetic Regulatory Mechanisms of Mortality Risk. Advanced Science, 13(3), Artikel e14464. https://doi.org/10.1002/advs.202514464

Madsen, C. K., Hama, J., Nielsen, B., Janss, L., Ottosen, C.-O., Ramstein, G. & Brinch-Pedersen, H., (2026). Forædling af planter med forbedrede klimaeffekter, Nr. 2025-0896873, 24 s., jan. 09, 2026. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Hou, Y., Zou, D., Chu, Q., Zhan, B., Wang, R., Guan, D., Wang, W., Feng, X., Li, X., Zhu, X., Bai, Z., Gao, Y., Yin, H., Xu, T., Yuan, Z., Hu, X., Yang, N., Zhou, H., Fang, L. & Zhang, Z. (2026). The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity. Nucleic Acids Research, 54(D1), D982-D993. https://doi.org/10.1093/nar/gkaf731

Russello, H., Alison, J., He, Z. & Geissmann, Q. (2026). miniMon: A low-cost, low-tech mini timelapse camera trap for monitoring arthropods. Abstract fra Environmental and Behavioral Monitoring with Open Source, Low Cost Tools' Symposium (SICB 2026).

Ahmad, A., Gebreyesus, G., Wold, J. P., Sonesson, A. K., Berg, P. & Difford, G. F. (2026). High-throughput NIR-based phenotyping for genomic prediction of feed intake and production traits in Atlantic Salmon. Aquaculture, 611, Artikel 743006. https://doi.org/10.1016/j.aquaculture.2025.743006

Liu, J., Li, Y., Yu, X., Ren, B., Chen, H., Ding, F., Jiang, F., Ottosen, C. O., Song, X., Mittler, R., Wu, Z. & Zhou, R. (2026). Specific redox homeostasis, ion accumulation and gas exchange responses in tomato plants subjected to combined drought and salinity stresses. Scientia Horticulturae, 355, Artikel 114543. https://doi.org/10.1016/j.scienta.2025.114543

Hof, J., Vermeulen, S. & Richters, A. (2026). Biased associations between number of BCG instillations and outcome in non-muscle-invasive bladder cancer. BJU International, 137(1), 226. https://doi.org/10.1111/bju.16866

Gao, Y., Yang, L., Kuhn, K., Li, W., Zanton, G., Bowman, M., Zhao, P., Zhou, Y., Fang, L., Cole, J. B., Rosen, B. D., Ma, L., Li, C., Baldwin, R. L., Van Tassell, C. P., Zhang, Z., Smith, T. P. L. & Liu, G. E. (2026). Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle. Journal of Advanced Research, 79, 137-150. https://doi.org/10.1016/j.jare.2025.04.014

Vahedi Torghabeh, B., Moslemi, C., Asp, T., Yu, X. & Ramstein, G. (2026). Detection of deleterious variants by protein language models is improved by nucleotide conservation at three evolutionary timescales in rice. Earth and Space Science Open Archive. https://doi.org/10.22541/essoar.177046418.89192569/v1

Baghooee, M. & Geissmann, Q. (2026). Insect size matters: Using image and dimensions together improves image classification. Ecological Informatics, 94, Artikel 103664. https://doi.org/10.1016/j.ecoinf.2026.103664

Lin, Q., Cai, X., Zhong, Z., Li, T., Chen, X., Ayalew, W., Xu, Z., Wei, C., Zhang, X., Cheng, H., Zhang, Z., Li, X., Tang, Y., Chen, S., Zhou, J., Si, J., Wu, X., Ning, C., Wang, Q. ... Zhang, Z. (2026). Meta-GWAS of Pig Semen Quality Traits Reveals Conserved Genes Regulating Mammalian Fertility. Advanced Science. Advance online publication. https://doi.org/10.1002/advs.202515203

Pan, X., Gong, W., Cai, X., Teng, J., Cai, J., Zeng, H., Ayalew, W., Shen, Q., Zhong, Z., Wang, Y., Zhang, W., Tian, Y., Xu, D., Gao, Y., Yin, H., Zhang, Y., Hou, J., Zhou, T., Li, J. ... Zhang, Z. (2026). Multi-Tissue Genetic Regulation of RNA Editing in Pigs. Advanced Science. Advance online publication. https://doi.org/10.1002/advs.202518238

Wang, C., Zhang, Y., Chen, C., Xu, X., Qin, S., Qi, J., Bao, Y., Li, H., Chen, R., Zheng, W., Chen, Z., Fang, L., Zhao, Y. & Liu, Y. (2026). Multi-Tissue Omics Analysis Uncovers Translational Regulation Underlying Complex Traits in Pigs. Advanced Science, Artikel e74200. Advance online publication. https://doi.org/10.1002/advs.74200

Wang, S., Khaipho-Burch, M., Johnson, L. C., Miller, Z. R., Bradbury, P. J., Speed, D., Allen, W. J., Romay, M. C., Xue, J., Buckler, E. S., Ramstein, G. P. & Song, B. (2026). Predicted protein 3D structures provide essential insights into the genetic architecture underlying phenotypic diversity in maize. Genome Research, 36(1), 214-225. https://doi.org/10.1101/gr.280514.125

Zaalberg, R. M., Andersen, L. B., Noel, S. J., Buitenhuis, A. J., Jensen, K. & Gebreyesus, G. (Accepteret/In press). Prediction of amino acid content in live black soldier fly larvae using near infrared spectroscopy. Journal of Insects as Food and Feed. https://doi.org/10.1163/23524588-bja10381

Ithurbide, M., Bouquet, A., Rupp, R., Puillet, L. & Friggens, N. C. (2026). Resilience and Robustness in the Service of Longevity and Sustainable Efficiency in Dairy Production. Annual Review of Animal Biosciences, 14(1), 229-250. https://doi.org/10.1146/annurev-animal-041125-111332

Shi, T., Shan, H., Wang, H., Guo, X., Li, H., Han, B., Zhu, S., Wang, F., Tan, G., Niyazbekova, Z., Ren, J., Zhou, Y., Zhang, Q., Zheng, W., Jia, M., Zhang, A., Cao, X., Sun, H., Sun, D. ... Jiang, Y. (2026). Single-Cell Transcriptomic Atlases of Camels and Cattle Unravel Molecular Evolution of Digestive and Metabolic Systems. Advanced Science. Advance online publication. https://doi.org/10.1002/advs.202519346

Romé, H. J. S., Bagge, M. & Jensen, J. (2026). The Genetic Basis of Resistance to Late Blight in Tetraploid Potatoes. Crop Breeding, Genetics and Genomics, 8(1). https://doi.org/10.20900/cbgg20260001

Zhu, D., Shi, K., Li, C., Yan, Y., Li, H., Bai, Z., Tan, L., Guan, D., Zhao, Y., Wang, Y., Fan, B., Jiang, Z., Xu, Z., Feng, C., Fang, L., Hu, X. & ChickenGTEx Consortium (2026). Egg-laying ChickenGTEx resource deciphers context-specific regulatory effects on fertility traits. Nature Communications, 17(1), Artikel 553. Advance online publication. https://doi.org/10.1038/s41467-025-67245-y

Liu, X., Wang, T., Zheng, Z., Dong, C., Liu, W., Niu, Z., Yang, Y., Wu, X., Qiu, Q., Yang, Y., Li, K., Lenstra, J. A., Yan, P., Kang, M., Li, B., Fang, L. & Liu, J. (2025). A 14-bp motif in the KIT active promoter region is critical for melanin accumulation in yaks, mice, and humans. BMC Biology, 23(1), Artikel 208. https://doi.org/10.1186/s12915-025-02311-x

Yin, H., Zhao, Q., Yang, L., Yi, G., Yao, W., Fang, L. & Bai, L. (2025). A multi-tissue and -breed catalogue of chromatin conformations and their implications in gene regulation in pigs. BMC Genomics, 26(1), Artikel 484. https://doi.org/10.1186/s12864-025-11490-4

Zhu, S. L., Yan, Y. N., Jia, M. H., Li, H. C., Han, B., Shi, T., Xu, L. B., Wang, X. W., Zhang, Q., Zheng, W. J., Xu, J. H., Chen, L., Qi, W., Cai, S. J., Chen, X. P., Gu, F. F., Liu, J. X., Liu, G. E., Jiang, Y. ... Sun, H. Z. (2025). Antioxidants promote metabolic remodeling in cattle rumen epithelium revealed by single-cell resolution. iMeta, 4(6), Artikel e70100. https://doi.org/10.1002/imt2.70100

Hanini, A. & Beljadid, A. (2025). A semi-implicit method for modeling salinity and temperature in variable-density flow. Mathematics and Computers in Simulation, 238, 222-239. https://doi.org/10.1016/j.matcom.2025.04.032

Shi, R., van der Linden, A., Ducro, B., Puillet, L. & Bouquet, A. (2025). Assessing future economic and environmental impacts of selecting resilient dairy cows using integrated mechanistic and genetic modelling. Animal : an international journal of animal bioscience, 19(12), Artikel 101716. https://doi.org/10.1016/j.animal.2025.101716

Morales Moreira, Z. P., Kak, K., Wei, Z. W., Yanez-Ortuno, D., Wang, N. R., Hedges, J. B., Chen, M. Y., Geissmann, Q., Zhang, W., Chatterton, S., Ryan, K. S. & Haney, C. H. (2025). Azomycin produced by Pseudomonas has both phytotoxic and anti-oomycete activity. Journal of Bacteriology, 207(12). https://doi.org/10.1128/jb.00292-25

Poulsen, B. G., Lourenco, D., Ostersen, T., Nielsen, B., Leite, N. G., Henryon, M. & Christensen, O. F. (2025). Comparison between repeatability, reproductive stage stratified repeatability, and relative risk models for prediction of breeding values for functional survival in rotationally crossbred sows. Genetics Selection Evolution, 57(1), Artikel 72. https://doi.org/10.1186/s12711-025-01019-4

Ssemakula, F., Nawoya, S., Kunyanga, C. N., Akol, R., Nakimbugwe, D., Bett, R. C., Karstoft, H., Bjerge, K., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Emerging technologies for fast determination of nutritional quality and safety of insects for food and feed: A review. Computers and Electronics in Agriculture, 239, Artikel 111126. https://doi.org/10.1016/j.compag.2025.111126

Berg, J. A., Sævik, B. K., Trangerud, C., Madsen, P. & Lingaas, F. (2025). Genetic analyses of lumbosacral transitional vertebra and hip dysplasia in nine dog breeds in Norway. Acta Veterinaria Scandinavica, 67(1), Artikel 25. https://doi.org/10.1186/s13028-025-00810-z

Gautason, E., Þórarinsdóttir, Þ. & Sahana, G. (2025). Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle. Journal of Applied Genetics, 66(4), 1053-1064. Artikel e65550. https://doi.org/10.1007/s13353-025-00978-0

Tabrizi, F., Rosén, J., Grönvall, H., William-Olsson, V. R., Arner, E., Magnusson, P. K., Palm, C., Larsson, H., Viktorin, A., Bernhardsson, J., Björkdahl, J., Jansson, B., Sundin, Ö., Zhou, X., Speed, D. & Åhs, F. (2025). Heritability and polygenic load for comorbid anxiety and depression. Translational Psychiatry, 15(1), 98. Artikel 98. https://doi.org/10.1038/s41398-025-03325-3

Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R., Woomer, J., Verges, V., McDonald, A. G., McMahan, C. S., DeBolt, S., Robertson, D. J. & Sekhon, R. S. (2025). High-density Phenotype Data of Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize. Scientific Data, 12(1), Artikel 1721. https://doi.org/10.1038/s41597-025-06008-2

Hosseinzadeh, S., Rafat, S. A. & Fang, L. (2025). Integrated TWAS, GWAS, and RNAseq results identify candidate genes associated with reproductive traits in cows. Scientific Reports, 15(1), 1932. Artikel 1932. https://doi.org/10.1038/s41598-024-82448-x

Wang, X., Si, J., Wang, Y., Fang, L., Zhang, Z. & Zhang, Y. (2025). Integrating gene expression data via weighted multiple kernel ridge regression improved accuracy of genomic prediction. Genetics Selection Evolution, 57(1), Artikel 48. https://doi.org/10.1186/s12711-025-00997-9

An, B., Liu, P., Yang, Z., Ying, F., Liu, D., Wen, J. & Zhao, G. (2025). Integrative transcriptomics and metabolomics reveal neuroendocrine-lipid crosstalk and adenosine signaling in broiler under heat stress. BMC Genomics, 26(1), Artikel 699. https://doi.org/10.1186/s12864-025-11881-7

Bouquet, A., Slagboom, M., Thomasen, J. R., Kargo, M., Friggens, N. C. & Puillet, L. (2025). Interfacing mechanistic and breeding scheme simulation to predict selection response on lactation efficiency in dairy cows under different nutritional environments. Genetics Selection Evolution, 57(1), Artikel 68. https://doi.org/10.1186/s12711-025-01013-w

Chen, J., Huang, R., Ma, J., Su, G., Huang, M., Zhou, W., Liu, C., Liu, Q., Li, P. & Zhao, Q. (2025). Investigating the genetic imprint of long body length, high lean meat rate, high fertility and long gestation period in Danish Landrace pigs. BMC Genomics, 26(1), Artikel 869. https://doi.org/10.1186/s12864-025-12092-w

Hjelholt, A. J., Gholipourshahraki, T., Bai, Z., Shrestha, M., Kjolby, M., Sørensen, P. & Rohde, P. D. (2025). Leveraging genetic correlations to prioritize drug groups for repurposing in type 2 diabetes. The Pharmacogenomics Journal, 25(6), Artikel 33. https://doi.org/10.1038/s41397-025-00392-z

Xi, Y., Qi, J., Yang, Z., Zeng, Y., Zhang, H., Tao, Q., Xu, M., Huang, A., Hu, S., Han, C., Bai, L., Hu, J., Wang, J., Li, L., Fang, L. & Liu, H. (2025). Mapping multitissue regulatory variants reveals a liver-centric coexpression network associated with duck egg-laying performance. Genome Research, 35(10), 2211-2225. https://doi.org/10.1101/gr.280345.124

Zhu, X., Li, C., Luo, C., Bai, Z., Shu, D., Chen, P., Ren, J., Song, R., Fang, L., Qu, H., Wang, Y. & Hu, X. (2025). Mapping the regulatory genetic landscape of complex traits using a chicken advanced intercross line. Nature Communications, 16(1), Artikel 5841. https://doi.org/10.1038/s41467-025-60834-x

Yin, H., Yang, L., Zhao, Q., Yao, W., Teng, J., Gao, Y., Xu, Z., Lin, Q., Diao, S., Liu, X., Zhao, F., Zhou, Z., Wang, Q., Li, J., Zhang, Z., Zhou, H., Groenen, M. A. M., Madsen, O., Bai, L. ... Li, K. (2025). Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs. BMC Biology, 23(1), Artikel 188. https://doi.org/10.1186/s12915-025-02279-8

Ye, X., Sahana, G., Lund, M. S., Li, B. & Cai, Z. (2025). Network analyses unraveled the complex interactions in the rumen microbiota associated with methane emission in dairy cattle. Animal Microbiome, 7(1), Artikel 24. https://doi.org/10.1186/s42523-025-00386-z

Tu, J. H., Liu, B. G., Lin, B. J., Liu, H. C., Guo, S. C., Ouyang, Q. Y., Fang, L. Z., He, X., Song, Z. H. & Zhang, H. H. (2025). Single-cell transcriptomic atlas of the chicken cecum reveals cellular responses and state shifts during Eimeria tenella infection. BMC Genomics, 26(1), Artikel 141. https://doi.org/10.1186/s12864-025-11302-9

Ollivier, R., Robin, S., Galland, M., Shih, P. Y., Morlière, S., Paulmann, M. K., Gershenzon, J., Kunert, G., Pilet-Nayel, M. L., Simon, J. C. & Sugio, A. (2025). Transcriptomic analysis reveals candidate molecular pathways involved in pea (Pisum sativum L.) resistance to pea aphid (Acyrthosiphon pisum Harris) biotypes. BMC Genomics, 26(1), Artikel 580. https://doi.org/10.1186/s12864-025-11742-3

Skovbjerg, C. K., Sarup, P., Wahlström, E. M., Jensen, J. D., Olesen, L., Orabi, J., Jensen, J., Ramstein, G. P. & Jahoor, A. (2025). Genomic prediction in a small barley population can benefit from training on related populations. G3 (Bethesda, Md.), 15(11). https://doi.org/10.1093/g3journal/jkaf218, https://doi.org/10.1093/g3journal/jkaf218

Þórarinsdóttir, Þ., Eiriksson, J., Gautason, E., Thomasen, J. R. & Liu, H. (2025). Evaluating genomic breeding programs for a small dairy cattle population with widespread use of private bulls. Journal of Dairy Science, 108(11), 12450-12462. https://doi.org/10.3168/jds.2025-26592

Schneider, H., Lajevardi, R. K., Bjerring, M., Løvendahl, P., Lund, M. S. & Villumsen, T. M. (2025). Genetic parameters for enteric methane traits and their genetic connection with milk production in Danish Holstein cattle. Journal of Dairy Science, 108(11), 12519-12530. https://doi.org/10.3168/jds.2025-26853

Bai, Z., Chen, W., Cai, Z. & Sahana, G. (2025). Genomic insights into young stock survival in Danish Jersey cattle: A breed-specific QTL on chromosome 10 and its regulatory potential. Genomics, 117(6), Artikel 111134. https://doi.org/10.1016/j.ygeno.2025.111134, https://doi.org/10.1016/j.ygeno.2025.111134

Johansen, N. H., Bellucci, A., Hansen, P. B., Marum, P., Amdahl, H., Gylstrøm, K. H., Rognli, O. A., Kemešytė, V., Brazauskas, G., Greve, M., Persson, C., Isolahti, M., Helgadóttir, Á., Aavola, R., Asp, T. & Ramstein, G. P. (2025). Genomic prediction of agronomic traits in perennial ryegrass (Lolium perenne L.) and genotype x environment interactions at the limit of the species distribution. Theoretical and Applied Genetics, 138(11), Artikel 281. https://doi.org/10.1007/s00122-025-05064-x

Yang, Z., Liu, P., Ying, F., Liu, D., Wen, J., Zhao, G. & An, B. (2025). The heart and liver transcriptome responses to acute and chronic heat stress in broilers. Poultry Science, 104(11), Artikel 105632. https://doi.org/10.1016/j.psj.2025.105632

Dai, D., Si, J., Jiang, L., Han, B., Wang, K., Wang, X., Yan, S., Yin, Y., Chen, W., Mao, H., Pauciullo, A., Li, S. T., Fang, L. & Zhang, Y. (2025). Comparative Single-Cell Transcriptomic Landscape Reveals the Regulatory Mechanisms of Lactation during Selective Breeding in Asian Water Buffalo. Advanced Science, 12(37), Artikel e08847. https://doi.org/10.1002/advs.202508847

Han, B., Li, H., Zheng, W., Zhang, Q., Chen, A., Zhu, S., Shi, T., Wang, F., Zou, D., Song, Y., Ye, W., Du, A., Fu, Y., Jia, M., Bai, Z., Yuan, Z., Liu, W., Tuo, W., Hope, J. C. ... Sun, D. (2025). A multi-tissue single-cell expression atlas in cattle. Nature Genetics, 57(10), 2546-2561. https://doi.org/10.1038/s41588-025-02329-5

Milkevych, V. & Villumsen, T. M. (2025). Fault detection in the sniffer-based gas emission measurement systems. Computers and Electronics in Agriculture, 237, Artikel 110652. https://doi.org/10.1016/j.compag.2025.110652

Wang, X., Yuan, Y., Pei, F., Yang, J., Wang, C., Bao, P., Zhao, X., Liu, H., Gao, H., Hou, M., Gao, Y., Li, J., Hao, D. & Li, R. (2025). Integrated Analysis of Proteomics and Metabolomics for Heat Stress in Chinese Holstein Cows. Animals, 15(20), Artikel 3049. https://doi.org/10.3390/ani15203049

Guillenea Golovanevsky, A. C., Cuyabano, B. C. D., Croiseau, P., Lund, M. S. & Karaman, E. (2025). QTL detection in multi-breed cattle populations including crossbred animals: a simulation study. Animal, 19(10), Artikel 101639. https://doi.org/10.1016/j.animal.2025.101639

Pei, Y., Zhao, X., Du, W., Diao, W., Zhang, W., Xiong, B., Ramstein, G. P., Ottosen, C. O., Cheng, C., Zhao, Q., Li, J., Lou, Q., Chen, J. & Yu, X. (2025). Synthetic allopolyploidy unveils hybridization-driven transcriptional reprogramming underlying thermal adaptation in Cucumis. Plant Journal, 124(1), Artikel e70507. https://doi.org/10.1111/tpj.70507

Adamsen, A. P. S. (red.), Manevski, K. (red.), Lærke, P. E. (red.), Ugilt Larsen, S., Jørgensen, U., Olesen, J. E., Andersen, M. N., Bay, S. S., Hutchings, N., Hansen, E. M., Munkholm, L. J., Børgesen, C. D., Thomsen, I. K., Elsgaard, L., Petersen, S. O., Toda, M., Ntinyari, W., Sørensen, P., Rasmussen, C. ... Nielsen, H. M. (2025). Virkemidler til reduktion af klimagasser i landbruget 2025. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug

Gensemer, C., Petrucci, T., Beck, T., Daylor, V., Griggs, M., Griggs, C., Weintraub, A., Byerly, K., Guo, L., Morningstar, J., Kornblau, I., Biggs, R., Moore, K., Koren, N., Hastings, C., Oberlies, E., Zientara, E. R., Devey, E., Dooley, S. ... Norris, R. A. (2025). KLK15 alters connective tissues in hypermobile Ehlers-Danlos syndrome. iScience, 28(9), Artikel 113343. https://doi.org/10.1016/j.isci.2025.113343

van der Heide, M. E. & Janss, L., (2025). Estimated usage of organic and non-organic feed and protein-rich feedstuff for organic pig and poultry in 2024, Nr. 2025-0830467, 22 s., sep. 10, 2025. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Ollivier, R., Rodriguez-Algaba, J., Patpour, M., Wadum Larsen, M., Kristensen, P. S., Mojerlou, S., Nielsen, B., Malinowska, M., Lenk, I., Justesen, A. F., Hovmøller, M. S., Boelt, B. & Asp, T. (2025). Identification of the genetic architecture of stem rust resistance in perennial ryegrass. Abstract fra 36th EUCARPIA Fodder Crops and Amenity Grasses Section conference, Aberystwyth, Storbritannien.

Mouritzen, T. W., Meurer, K. H. E., Bornhofen, E., Janss, L., Weih, M. & Andersen, S. U. (2025). Faba bean genetics and crop growth models – progress to date and opportunities for integration. Plant and Soil, 514(1), 47-64. https://doi.org/10.1007/s11104-025-07459-7

Tariku, H. G., Nielsen, H. M., Walusimbi, S., Hansen, L. S., Gebreyesus, G., Rugira-Kugonza, D., Bett , R. C., Nakimbugwe, D., Geoffrey, S. & Kassie, G. T. (2025). Farmers’ Preferences for Larval Traits in Small-Scale Black Soldier Fly (Hermetia illucens) Production System [019]. 43-43. Poster-session præsenteret på BSFcon 2025, Cambridge, Storbritannien.

Nielsen, H. M., Hansen, L. S., Zaalberg, R. M., Gebreyesus, G., Kargo, M., Noer, N. K., Schou, T. M., Jensen, K., Berggreen, I. E., Nørgaard, J. V., Henryon, M. & Kristensen, T. N. (2025). FLYBREED: Efficient production of the black soldier fly through selective breeding [018]. 36-36. Abstract fra BSFcon 2025, Cambridge, Storbritannien.

Furtado, B. U., Nagy, I., Tyburski, J., Roulund, N., Asp, T. & Hrynkiewicz, K. (2025). Functional Analysis of Lolium perenne L. in Response to Fungal Endophyte Inoculation and Salinity Stress. Journal of Plant Growth Regulation, 44(9), 5593-5615. https://doi.org/10.1007/s00344-025-11782-9

Dai, S., Zhao, P., Li, W., Peng, L., Jiang, E., Du, Y., Zhang, W., Dai, X., Yang, L., Li, Z., Xu, L., Lan, X., Lyu, W., Yang, L., Fang, L., Liu, G. E. & Zhou, Y. (2025). Global Pangenome Analysis Highlights the Critical Role of Structural Variants in Cattle Improvement and Identifies a Unique Event as a Novel Enhancer in IGFBP7⁺ Cells. Molecular Biology and Evolution, 42(9), Artikel msaf205. https://doi.org/10.1093/molbev/msaf205

Hein, L., Thomasen, J. R., Kargo, M., Nielsen, H. M., Bouquet, A. E. R. & Liu, H. (2025). Impact of increased heterozygosity on Nordic Total Merit traits in dairy cattle: Potential for mating strategy optimization. Journal of Dairy Science, 108(9), 9946-9955. https://doi.org/10.3168/jds.2024-26200

Hansen, L. S. (2025). INSECT-IMP - advancing farmed insect breeding through interdisciplinary collaboration [061] - Sponsor Talk. 11-11. Abstract fra BSFcon 2025, Cambridge, Storbritannien.

Hof, J. P. & Speed, D. (2025). LDAK-KVIK performs fast and powerful mixed-model association analysis of quantitative and binary phenotypes. Nature Genetics, 57(9), 2116-2123. https://doi.org/10.1038/s41588-025-02286-z

Balding, D. J. & Speed, D. (2025). Recent Statistical Innovations in Human Genetics. Annals of Human Genetics, 89(5), 241-254. https://doi.org/10.1111/ahg.12606

Iso-Touru, T., Fischer, D., Panitz, F., Taponen, S., Cai, Z., Sahana, G., Tapio, I. & Vilkki, J. (2025). Response of primary mammary epithelial cells to pathogen challenge in dairy cows with divergent genomic breeding values for udder health. Genomics, 117(5), Artikel 111102. https://doi.org/10.1016/j.ygeno.2025.111102

Yu, X., Faggion, S., Liu, Y., Wang, B., Zeng, Q., Lu, C., Hu, J., Bargelloni, L., Fang, L. & Bao, Z. (2025). Role of multi-omics in aquaculture genetics and breeding: current status and future perspective. Science China Life Sciences, 68(9), 2591-2604. https://doi.org/10.1007/s11427-024-2828-8

Aalborg, T., Romé, H., Ranzau, C., Bagge, M., Jensen, J. & Nielsen, K. L. (2025). The transmission ability in a population of elite tetraploid potatoes. The Plant Genome, 18(3), Artikel e70066. https://doi.org/10.1002/tpg2.70066, https://doi.org/10.1002/tpg2.70066

Bouquet, A. E. R., Kargo, M., Thorup, V. M., Chen, L., Østergaard, S. & Stephansen, R. B. (2025). Modelling feed efficiency in dairy cows for selection and management decisions. I Book of Abstracts - 76th Annual Meeting of the European Federation of Animal Science (EAAP) (s. 362). Artikel Theatre 5.

Teng, J., Duan, C., Zhang, X., Chen, Z., Ning, C., Li, R., Gao, Y., Gao, H., Liu, H., Li, J., Wang, X. & Zhang, Q. (2025). Bayesian fine-mapping and Mendelian randomization leveraging expression quantitative trait loci reveal novel candidate causal genes for body conformation traits in cattle. Journal of Dairy Science, 108(8), 8637-8647. https://doi.org/10.3168/jds.2025-26361

Giagnoni, G., Foldager, L., Stephansen, R. B., Liu, H., Lassen, J. & Weisbjerg, M. R. (2025). Do feed conversion efficiency and its inverse, feed conversion ratio, differ in their distributions for dairy cows?. 200. Abstract fra 76th Annual Meeting of The European Federation of Animal Science, Innsbruck, Østrig.

Sendrowski, J., Bataillon, T. & Ramstein, G. P. (2025). In silico prediction of variant effects: promises and limitations for precision plant breeding. Theoretical and Applied Genetics, 138(8), Artikel 193. https://doi.org/10.1007/s00122-025-04973-1

Li, P., Li, Z., Ying, F., Zhu, D., Liu, D., Song, X., Wen, J., Zhao, G. & An, B. (2025). Leveraging ultrasonic-derived phenotypes and estimated breeding value to improve abdominal fat weight prediction in chickens throughout the egg laying period. Smart Agricultural Technology, 11, Artikel 100912. https://doi.org/10.1016/j.atech.2025.100912

Nawoya, S., Geissmann, Q., Karstoft, H., Bjerge, K., Akol, R., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Prediction of black soldier fly larval sex and morphological traits using computer vision and deep learning. Smart Agricultural Technology, 11, Artikel 100953. https://doi.org/10.1016/j.atech.2025.100953

Brulin, L., Sanchez, M.-P., Cai, Z., Ducrocq, S., Even, G., Martel, S., Merlin, S., Audebert, C., Estellé, J., Sahana, G. & Croiseau, P. (2025). Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows. Journal of Dairy Science, 108(8), 8666-8684. https://doi.org/10.3168/jds.2024-26203

Ye, X., Sahana, G., Lund, M. S. & Cai, Z. (2025). The crosstalk between host and rumen microbiome in cattle: insights from multi-omics approaches and genome-wide association studies. World Journal of Microbiology and Biotechnology, 41(8), Artikel 267. https://doi.org/10.1007/s11274-025-04504-6

CattleGTEx Consortium (2025). Genetic score omics regression and multitrait meta-analysis detect widespread cis-regulatory effects shaping bovine complex traits. PNAS Nexus, 4(7), Artikel pgaf208. https://doi.org/10.1093/pnasnexus/pgaf208

Zhao, Q., Liu, H., Zhang, Q., Qadri, Q. R., Pan, Y., Su, G., Li, P. & Huang, R. (2025). Optimal Combination of Different Selection and Mating Strategies on Exploiting Genetic Diversity and Genetic Gain in Small Pig Conservation Populations. Journal of Animal Breeding and Genetics, 142(4), 444-453. https://doi.org/10.1111/jbg.12917

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Jette Odgaard Villemoes