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Publications

Peer-reviewed publications at QGG

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Marašinskienė, Š., Šveistienė, R., Kosińska-Selbi, B., Schmidtmann, C., Ettema, J. F., Juškienė, V. & Kargo, M. (2022). Application of a Bio-Economic Model to Demonstrate the Importance of Health Traits in Herd Management of Lithuanian Dairy Breeds. Animals, 12(15), Article 1926. https://doi.org/10.3390/ani12151926
Zhang, H., Wang, K., An, T., Zhu, L., Chang, Y., Lou, W., Liu, L., Guo, G., Liu, A., Su, G., Brito, L. F. & Wang, Y. (2022). Genetic parameters for dairy calf and replacement heifer wellness traits and their association with cow longevity and health indicators in Holstein cattle. Journal of Dairy Science, 105(8), 6749-6759. https://doi.org/10.3168/jds.2021-21450
Consortium, V. G., Nijman, I. J., Rosen, B. D., Bardou, P., Faraut, T., Cumer, T., Daly, K. G., Zheng, Z., Cai, Y., Asadollahpour, H., Kul, B. Ç., Zhang, W.-Y., Guangxin, E., Ayin, A., Baird, H., Bakhtin, M., Bâlteanu, V. A., Barfield, D., Berger, B. ... Lenstra, J. A. (2022). Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. Molecular Ecology, 31(16), 4364-4380. https://doi.org/10.1111/mec.16579
Gredler-Grandl, B., Raymond, B., Schopen, G. C. B., Chitneedi, P. K., Cai, Z., Manzanilla Pech, C. I. V., Iso-Touru, T., Fischer, D., Bolormaa, S., Chud, T. C. S., Schenkel, F. S., Wang, Y., Li, C., Hailemariam, D., Villanueva, B., Fernandez, A., Kuehn, C., Sahana, G., Lidauer, M. ... Bouwman, A. C. (2022). Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_010.pdf
Nagy, I., Veeckman, E., Liu, C., Bel, M. V., Vandepoele, K., Jensen, C. S., Ruttink, T. & Asp, T. (2022). Chromosome-scale assembly and annotation of the perennial ryegrass genome. BMC Genomics, 23(1), Article 505. https://doi.org/10.1186/s12864-022-08697-0
Martinez Boggio, G., Meynadier, A., Rupp, R., Allain, C., Buitenhuis, A. J. & Marie-Etancelin, C. (2022). Evidence of genetic links between rumen bacteria and milk somatic cell score in Lacaune dairy sheep. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/66_004.pdf
Martinez Boggio, G., Christensen, O. F., Legarra, A., Allain, C., Meynadier, A. & Marie-Etancelin, C. (2022). Rumen bacteria do not provide improved genetic evaluation of dairy traits in sheep. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/05_009.pdf
Schmidtmann, C., Slagboom, M., Sørensen, A. C., Hinrichs, D., Thaller, G. & Kargo, M. (2022). Short- and long-term consequences of collaboration between Northern European Red dairy and dual-purpose cattle. Journal of Animal Breeding and Genetics, 139(4), 447-461. https://doi.org/10.1111/jbg.12672
Jensen, J. (2022). Word of thanks to professor Ignacy Misztal. Journal of Animal Breeding and Genetics, 139(4), 369-369. https://doi.org/10.1111/jbg.12725
Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, L., Fei, Z., Städler, T., Xu, S. ... Huang, S. (2022). Graph pangenome captures missing heritability and empowers tomato breeding. Nature, 606(7914), 527-534. https://doi.org/10.1038/s41586-022-04808-9
Salunke, S., Ahuja, B., Hashmi, M. F., Marriboyina, V. & Bokde, N. D. (2022). 5D Gauss Map Perspective to Image Encryption with Transfer Learning Validation. Applied Sciences, 12(11), Article 5321. https://doi.org/10.3390/app12115321
Shende, M. K., Salih, S. Q., Bokde, N. D., Scholz, M., Oudah, A. Y. & Yaseen, Z. M. (2022). Natural Time Series Parameters Forecasting: Validation of the Pattern-Sequence-Based Forecasting (PSF) Algorithm; A New Python Package. Applied Sciences (Switzerland), 12(12), Article 6194. https://doi.org/10.3390/app12126194
Sterenborg, R. B. T. M., Galesloot, T. E., Teumer, A., Netea-Maier, R. T., Speed, D., Meima, M. E., Visser, W. E., Smit, J. W. A., Peeters, R. P. & Medici, M. (2022). The effects of common genetic variation in 96 genes involved in thyroid hormone regulation on TSH and FT4 concentrations. The Journal of Clinical Endocrinology & Metabolism, 107(6), e2276-e2283. https://doi.org/10.1210/clinem/dgac136
Sammad, A., Zhang, H., Shi, R., Dong, Y., Luo, H., Chen, Z., Liu, L., Guo, G., Liu, A. & Wang, Y. (2022). A Post-GWAS Functional Analysis Confirming Effects of Three BTA13 Genes CACNB2, SLC39A12, and ZEB1 on Dairy Cattle Reproduction. Frontiers in Genetics, 13, Article 882951. https://doi.org/10.3389/fgene.2022.882951
Velasco-Galilea, M., Buitenhuis, A. J., Ramayo-Caldas, Y., Ballester, M., Piles, M. & Sanchez, J. P. (2022). GENOMIC REGIONS OF MEAT RABBIT INVOLVED IN THE VARIATION OF ITS CAECAL MICROBIOTA. In 46 Symposium de Cunicultura - Proceedings https://asescu.com/wp-content/uploads/2023/05/Libro-de-Actas_46-Symposium-Cunicultura-2022-1.pdf
Croiseau, P., Saintilan, R., Baur, A., Croue, I., Ducrocq, V., Thomasen, J. R., Karaman, E., Boichard, D., Leclerc, H. & Cuyabano, B. C. D. (2022). Accuracy of prediction for a genomic evaluation in rotational crossbreeding scheme (Montbéliarde x Holstein x Red Danish). In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/02_001.pdf
Speed, D., Kaphle, A. & Balding, D. J. (2022). SNP-based heritability and selection analyses: Improved models and new results. BioEssays, 44(5), e2100170. Article 2100170. https://doi.org/10.1002/bies.202100170
Barre, P., Asp, T., Byrne, S., Casler, M., Faville, M., Rognli, O. A., Roldan-Ruiz, I., Skøt, L. & Ghesquière, M. (2022). Genomic Prediction of Complex Traits in Forage Plants Species: Perennial Grasses Case. In Methods in Molecular Biology (pp. 521-541). Humana Press Inc. https://doi.org/10.1007/978-1-0716-2205-6_19
Chen, C. J., Garrick, D., Fernando, R., Karaman, E., Stricker, C., Keehan, M. & Cheng, H. (2022). XSim Version 2: Simulation of Modern Breeding Programs. G3: Genes, Genomes, Genetics, 12(4), Article jkac032. https://doi.org/10.1093/g3journal/jkac032
Mallawaarachchi, S., Tonkin-Hill, G., Croucher, N. J., Turner, P., Speed, D., Corander, J. & Balding, D. (2022). Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae. NAR Genomics & Bioinformatics, 4(1), Article lqac011. https://doi.org/10.1093/nargab/lqac011
Alemu, S. W., Bijma, P., Calus, M. P. L., Liu, H., Fernando, R. L. & Dekkers, J. C. M. (2022). Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations. Genetics Selection Evolution, 54(1), Article 12. https://doi.org/10.1186/s12711-022-00703-z
Lu, X., Arbab, A. A. I., Abdalla, I. M., Liu, D., Zhang, Z., Xu, T., Su, G. & Yang, Z. (2022). Genetic Parameter Estimation and Genome-Wide Association Study-Based Loci Identification of Milk-Related Traits in Chinese Holstein. Frontiers in Genetics, 12, Article 799664. https://doi.org/10.3389/fgene.2021.799664
Islam, M. S., Van der Werf, JHJ., Henryon, M., Chu, T. T., Wood, B. J. & Hermesch, S. (2022). Genotyping dead animals improves post-weaning survival of pigs in breeding programs. In WCGALP2022 Programme book Wageningen Academic Publishers. https://wcgalp.com/wp-content/uploads/2022/07/e-WCGALP22-programme-booklet.pdf
Nielsen, B., Horndrup, L. V. & Ask, B. (2022). Modeller for social genetiske effekter hos grise og betydningen for dyrevelfærd. In Symposium i anvendt statistik (pp. 126-128). SEGES Innovation. http://www.statistiksymposium.dk/Symposium%202022_Web.pdf
Clasen, J. B., Nielsen, H. M., Hein, L., Johansen, K., Vestergaard, M. & Kargo, M. (2022). Performance of first parity Holstein, Danish Red and their crosses in an experimental setting. In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science (EAAP): Book of abstracts No. 28 (2022) (pp. 671). Wageningen Academic Publishers. https://www.eaap2022.org/docs/AbstractBookEAAP.pdf
Kempe, R. M., Mehtiö, T., Leino, A.-M., Koivula, M., Pitkänen, T. J., Stephansen, R. B., Mäntysaari, P., Negussie, E., Pösö, J., Nielsen, U. S., Fikse, W. F., Aamand, G. P. & Lidauer, M. H. (2022). Single-step genomic prediction for metabolic body weight of Nordic Red dairy cattle. In WCGALP 2022: Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/14_005.pdf
Econogene Consortium, Ajmone-Marsan, P., Bradley, D. G., Colli, L., Drögemüller, C., Lei, C., Mannen, H., Pompanon, F., Tosser-Klopp, G. & Jiang, Y. (2022). Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. In R. F. Veerkamp & Y. de Haas (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges (pp. 886-889). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_208
Pan, Z., Yao, Y., Yin, H., Cai, Z., Wang, Y., Bai, L., Kern, C., Halstead, M., Chanthavixay, G., Trakooljul, N., Wimmers, K., Sahana, G., Su, G., Lund, M. S., Fredholm, M., Karlskov-Mortensen, P., Ernst, C. W., Ross, P., Tuggle, C. K. ... Zhou, H. (2021). Pig genome functional annotation enhances the biological interpretation of complex traits and human disease. Nature Communications, 12(1), Article 5848. https://doi.org/10.1038/s41467-021-26153-7
Madsen, M. D., van der Werf, J., Börner, V., Mulder, H. A. & Clark, S. (2021). Estimation of macro- and micro-genetic environmental sensitivity in unbalanced datasets. Animal, 15(12), Article 100411. https://doi.org/10.1016/j.animal.2021.100411
Washburn, J. D., Cimen, E., Ramstein, G., Reeves, T., O’Briant, P., McLean, G., Cooper, M., Hammer, G. & Buckler, E. S. (2021). Predicting phenotypes from genetic, environment, management, and historical data using CNNs. Theoretical and Applied Genetics, 134(12), 3997-4011. https://doi.org/10.1007/s00122-021-03943-7
Salimiyekta, Y., Vaez‐torshizi, R., Abbasi, M. A., Emmamjome‐kashan, N., Amin‐afshar, M., Guo, X. & Jensen, J. (2021). Random regression model for genetic evaluation and early selection in the iranian holstein population. Animals, 11(12), Article 3492. https://doi.org/10.3390/ani11123492