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Publications

Peer-reviewed publications at QGG

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Manzanilla Pech, C. I. V., Løvendahl, P. & Lassen, J. (2019). Multi-trait genomic prediction of methane emission in Danish Holstein. Abstract from 70th Annual Meeting of the European Federation of Animal Science (EAAP), Ghent, Belgium.
Guldbrandtsen, B., (2019). Nogle bemærkninger vedr. benefit sharing i husdyravl, No. 2019-760-001264, 7 p., May 20, 2019.
Veeckman, E., Van Glabeke, S., Haegeman, A., Muylle, H., Van Parijs, F. R. D., Byrne, S. L., Asp, T., Studer, B., Rohde, A., Roldán-Ruiz, I., Vandepoele, K. & Ruttink, T. (2019). Overcoming challenges in variant calling: Exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne). DNA Research, 26(1), 1-12. https://doi.org/10.1093/dnares/dsy033
Alexandre, P., Porto-Neto, L., Karaman, E., Lehnert, S. & Reverter, A. (2019). Pooled genotyping strategies for the rapid construction of genomic reference populations. Journal of Animal Science, 97(12), 4761– 4769. https://doi.org/10.1093/jas/skz344
Slagboom, M., Hjortø, L., Sørensen, A. C., Mulder, H. A., Thomasen, J. R. & Kargo, M. (2019). Possibilities for a specific breeding program for organic dairy production. 215-215. Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Nielsen, B., Ask, B., Gao, H. & Su, G. (2019). Prediction of individual breeding values from group recordings. Abstract from Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Xiang, R., Van Den Berg, I., MacLeod, I. M., Hayes, B. J., Prowse-Wilkins, C. P., Wang, M., Bolormaa, S., Liu, Z., Rochfort, S. J., Reich, C. M., Mason, B. A., Vander Jagt, C. J., Daetwyler, H. D., Lund, M. S., Chamberlain, A. J. & Goddard, M. E. (2019). Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits. Proceedings of the National Academy of Sciences (PNAS), 116(39), 19398-19408. https://doi.org/10.1073/pnas.1904159116
Nielsen, L. V., Nielsen, B., Christensen, O. F., Turner, S. P., Nielsen, H. M. & Ask, B. (2019). Selection of pigs for social genetic effects improves growth in crossbreeds. Paper presented at Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Kargo, M., Clasen, J., Ettema, J. F., Davis, R. B. & Østergaard, S. (2019). SimHerd Crossbred for estimating the economic effects of crossbreeding. 285-285. Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Dettmann, F., Warner, D., Buitenhuis, A. J., Kargo, M., Hostrup Kjeldsen, A. M., Nielsen, N. H., Lefebvre, D. M. & Santschi, D. E. (2019). The use of fatty acid profiles from milk recording samples to predict body weight change of dairy cows in early lactation in commercial farms. In J. Kucera, P. Bucek, D. Lipovsky, X. Bourrigan & M. Burke (Eds.), New traits and adding value to the recording and ID services in the animal production: Proceedings of the ICAR Conference held in Prague, CZ, 17-21 June 2019 (pp. 143-154). ICAR. https://www.icar.org/wp-content/uploads/2019/12/ICAR-Technical-Series-24-Prague-2019-Proceedings.pdf
Chu, T. T., Bastiaansen, J. WM., Berg, P. & Komen, H. (2019). Use of genomic information to improve accuracy of prediction from group records. Abstract from Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Gao, H., Nielsen, B., Su, G., Madsen, P., Jensen, J., Christensen, O. F., Ostersen, T. & Shirali, M. (2019). Use of repeated group measurements with drop out animals for genetic analysis. Abstract from Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Naeemipour Younesi, H., Shariati, M. M., Zerehdaran, S., Jabbari Nooghabi, M. & Løvendahl, P. (2019). Using quantile regression for fitting lactation curve in dairy cows. Journal of Dairy Research, 86(1), 19-24. https://doi.org/10.1017/S0022029919000013
Rome, H. J. S., Chu, T. T., Hawken, R., Henshall, J. & Jensen, J. (2019). WGBLUP model improves accuracy of breeding values prediction in a commercial line of broilers. Abstract from Abstract from 70th Annual Meeting of the European Federation of Animal Science EAAP 2019, Ghent, Belgium, Ghent, Belgium.
Hosseini-Vardanjani, S. M., Mahdi Shariati, M., Janss, L., Christensen, O. F., Anche, M. T. & Lund, M. S. (2018). Accounting for breed origin of alleles increase accuracy of genomic prediction in admixed populations. Poster session presented at World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand.
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018). Adjusting for Macro-Environmental Sensitivity in Growth rate of Danish Landrace and Duroc Pigs. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Villumsen, T. M. & Lund, M. S. (2018). Anvendelse af auktionsdata i minkavlen. In S. H. Møller & J. Malmkvist (Eds.), Temadag om aktuel minkforskning: DCA Rapport nr. 129, September 2018 (pp. 30-36). http://web.agrsci.dk/djfpublikation/index.asp?action=show&id=1272
Wang, X., Gao, H., G. Gebremedhin, K., Schmidt Bjerg, B., Van Os, J., Tucker, C. B. & Zhang, G. (2018). A predictive model of equivalent temperature index for dairy cattle (ETIC). Journal of Thermal Biology, 76, 165-170. https://doi.org/10.1016/j.jtherbio.2018.07.013
Karaman, E., Lund, M. S., Anche, M. T., Janss, L. & Su, G. (2018). A two-step approach to account for heterogeneous (co)variances across the genome using GBLUP. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Slagboom, M., Wallenbeck, A., Rydhmer, L., Thomasen, J. R. & Kargo, M. (2018). Breeding Goals for Organic Dairy Farming in Denmark Based on the Principles of Organic Agriculture. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Difford, G., Gebreyesus, G., Løvendahl, P., Buitenhuis, A. J., Lassen, J., Guldbrandtsen, B. & Sahana, G. (2018). Can rumen microbes improve prediction of subclinical ketosis in dairy cows? In S. C. (Ed.), Book of Abstracts of the 69th Annual Meeting of the European Federation of Animal Science (Vol. 24). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-871-1
Guldbrandtsen, B., Nielsen, V. H. & Schönherz, A. (2018). Case Studies using Molecular Data in Breed Conservation. Abstract from Workshop on Genomic Selection. Espoo 2018, Helsinki, Finland.
Sorg, D., Difford, G. F., Mühlbach, S., Kuhla, B., Swalve, H. H., Lassen, J., Strabel, T. & Pszczola, M. (2018). Comparison of a laser methane detector with the GreenFeed and two breath analysers for on-farm measurements of methane emissions from dairy cows. Computers and Electronics in Agriculture, 153, 285-294. https://doi.org/10.1016/j.compag.2018.08.024
Zhang, Z., Zhang, Q., Xiao, Q., Sun, H., Gao, H., Yang, Y., Chen, J., Li, Z., Xue, M., Ma, P., Yang, H., Xu, N., Wang, Q. & Pan, Y. (2018). Distribution of runs of homozygosity in Chinese and Western pig breeds evaluated by reduced-representation sequencing data. Animal Genetics, 49(6), 579-591. https://doi.org/10.1111/age.12730
Madsen, P., Milkevych, V., Gao, H., Christensen, O. F. & Jensen, J. (2018). DMU - A Package for Analyzing Multivariate Mixed Models in Quantitative Genetics and Genomics. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Cao, L. (2018). Effect of G×E on Breeding Cooperation Using Genomic Selection. Abstract from 12th World Conference on Animal Production (WCAP) & 2018 ASAS-CSAS Annual Meeting, Vancouver, British Columbia, Canada.
Slagboom, M., Mulder, H. A., Sørensen, A. C., Hjortø, L., Thomasen, J. R. & Kargo, M. (2018). Effects of specific breeding lines for organic dairy production in Denmark. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Su, G., Madsen, P., Nielsen, B., Ostersen, T., Shirali, M., Jensen, J. & Christensen, O. F. (2018). Efficiency of group records for prediction of breeding values. In Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Methods and Tools - Prediction 3 (pp. 1-6). Article 11.565 WCGALP. http://www.wcgalp.org/proceedings/2018/efficiency-group-records-prediction-breeding-values
Milkevych, V., Madsen, P., Gao, H. & Jensen, J. (2018). Efficient block-Gibbs sampling in variance component estimation for predictions which combine phenotypic and genomic information. 468. Abstract from ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gao, H., Madsen, P., Aamand, G. & Jensen, J. (2018). Estimation of variance components in populations under genomic selection. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Christensen, O. F., Kongsted, H. & Lund, M. S., (2018). Evaluering af avl for LG5, No. 2018-760-000656, 35 p., Jun 01, 2018.
Boichard, D. A., Boussaha, M., Capitan, A., Rocha, D., Hoze, C., Sanchez, M.-P., Tribout, T., Letaief, R., Croiseau, P., Grohs, C., Li, W., Harland, C., Charlier, C., Lund, M. S., Sahana, G., Georges, M., Barbier, S., Coppieters, W., Fritz, S. & Guldbrandtsen, B. (2018). Experience from large scale use of the EuroGenomics custom SNP chip in cattle. In Proceedings of the World Congress on Genetics Applied to Livestock Production: Volume Molecular Genetics 4 (Vol. 11). Article 11.675 http://www.wcgalp.org/proceedings/2018/experience-large-scale-use-eurogenomics-custom-snp-chip-cattle
Marete, A. G., Janss, L., Guldbrandtsen, B., Hoze, C., Sahana, G., Boichard, D. A. & Lund, M. S. (2018). Exploring non-additive variance using genome-wide dense SNP in four French and Nordic dairy cattle breeds. In Proceedings of the World Congress on Genetics Applied to Livestock Production Article 70
Zaalberg, R. M., Shetty, N., Janss, L. & Buitenhuis, A. J. (2018). Genetic analysis of Fourier transform infrared milk spectra for Danish Holstein and Danish Jersey. 302. Abstract from The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Yan, X., Liu, A., Dong, G., Guo, G., Li, X., Su, G. & Wang, Y. (2018). Genetic analysis of productive life in Chinese Holstein population. Abstract from 5th International Conference on Quantitative Genetics, Madison, United States.
Zhang, H., Xu, W., Li, X., Luo, H., Liu, A. & Wang, Y. (2018). Genetic analysis of skinfold thickness and its association with body condition score, and milk production traits in Chinese Holstein population. Abstract from ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Gajjar, S. G., Guldbrandtsen, B., Nayee, N. G., Sudhakar, A., Trivedi, K. R., Lund, M. S. & Sahana, G. (2018). Genetic composition, divergence, admixture and use of ancestry informative markers in indigenous breeds of cattle in India. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Challenges - Species Conservation Article 585 http://www.wcgalp.org/archive?f%5Bauthor%5D=14045
López-Correa, R. D., Peñagaricano, F., Rovere, G. & Urioste, J. I. (2018). Genetic parameter estimation for long endurance trials in the Uruguayan Criollo horse. Journal of Animal Breeding and Genetics, 135(3), 186-193. https://doi.org/10.1111/jbg.12324
Madsen, M. D., Madsen, P., Nielsen, B. J., Kristensen, T. N., Jensen, J. & Shirali, M. (2018). Genetic variance in macro-environmental sensitivity in growth rate in Danish Duroc pigs. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Ma, X., Li, P. H., Zhu, M. X., He, L. C., Sui, S. P., Gao, S., Su, G. S., Ding, N. S., Huang, Y., Lu, Z. Q., Huang, X. G. & Huang, R. H. (2018). Genome-wide association analysis reveals genomic regions on Chromosome 13 affecting litter size and candidate genes for uterine horn length in Erhualian pigs. Animal, 12(12), 2453-2461. https://doi.org/10.1017/S1751731118000332
Liu, A., Wang, Y., Lund, M. S. & Su, G. (2018). Genome-wide association study for female fertility traits in Chinese Holstein population. Abstract from 5th International Conference on Quantitative Genetics, Madison, United States.
Luo, H., Xu, W., Liu, A., Li, X., Liu, L. & Wang, Y. (2018). Genome-wide association study for rectal temperature in Chinese Holstein population. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 Article 587 http://www.wcgalp.org/system/files/proceedings/2018/genome-wide-association-study-rectal-temperature-chinese-holstein-population.pdf
Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2018). Genome-wide association study of the de novo synthesized milk fatty acids based on Dutch, Danish and Chinese Holstein Friesians. 141. Abstract from The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.
Colli, L., Milanesi, M., Talenti, A., Bertolini, F., Chen, M., Crisà, A., Daly, K. G., Del Corvo, M., Guldbrandtsen, B., Lenstra, J. A., Rosen, B. D., Vajana, E., Catillo, G., Joost, S., Nicolazzi, E. L., Rochat, E., Rothschild, M. F., Servin, B., Sonstegard, T. S. ... The ADAPTMAP consortium (Vivi Hunnicke Nielsen; member) (2018). Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes. Genetics Selection Evolution, 50(1), Article 58. https://doi.org/10.1186/s12711-018-0422-x
Rohde, P. D., Sørensen, I. F. & Sørensen, P. (2018). Genomic Feature Prediction Models - Improved Prediction Accuracy by Joint Marker Estimation. Poster session presented at ESHG 2018: European Society of Human Genetics, Milano, Italy.
Nayee, N. K., Su, G., Gajjar, S. G., Sahana, G., Saha, S., Trivedi, K. R., Guldbrandtsen, B. & Lund, M. S. (2018). Genomic prediction by single-step genomic BLUP using cow reference population in Holstein crossbred cattle in India. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Nayee, N. K., Su, G., Gajjar, S., Sahana, G., Saha, S., Trivedi, K. R., Guldbrandtsen, B. & Lund, M. S. (2018). Genomic prediction by single-step genomic BLUP using cow reference population in Holstein crossbred cattle in India. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Theory to Application - 1 (Vol. 11). Article 11.411 http://www.wcgalp.org/proceedings/2018/genomic-prediction-single-step-genomic-blup-using-cow-reference-population-holstein
Su, G., Mansan Gordo, D. G., Li, B., Aamand, G., Lund, M. S. & Lassen, J. (2018). Genomic prediction for dry matter intake in Nordic Holsteins. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 (Vol. Volume Electronic Poster Session - Methods and Tools - Prediction 2). Article 474 WCGALP. http://www.wcgalp.org/system/files/proceedings/2018/genomic-prediction-dry-matter-intake-nordic-holsteins.pdf
Ankamah-Yeboah, T., Janss, L., Hjortshøj, R. L. & Rasmussen, S. K. (2018). Genomic Selection in Winter Barley: A comparison of One-Step and Two-Step Approach. Abstract from Plant Biology Europe 2018, Copenhagen, Denmark.
Guldbrandtsen, B., Cai, Z., Sahana, G., Villumsen, T. M., Asp, T., Thomsen, B. & Lund, M. S. (2018). Genomics using the Assembly of the Mink Genome. In Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Molecular Genetics 1 Article 539 http://www.wcgalp.org/proceedings/2018/genomics-using-assembly-mink-genome
Mesbah-Uddin, M., Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2018). Genotype call for chromosomal deletions using read-depth from whole genome sequence variants in cattle. Poster session presented at The 11th World Congress on Genetics Applied to Livestock Production , Auckland, New Zealand.