Bouwman, A. C., Daetwyler, H. D., Chamberlain, A. J., Ponce, C. H., Sargolzaei, M., Schenkel, F. S.
, Sahana, G., Govignon-Gion, A.
, Boitard, S., Dolezal, M., Pausch, H.
, Brøndum, R. F., Bowman, P. J.
, Thomsen, B., Guldbrandtsen, B., Lund, M. S., Servin, B., Garrick, D. J., Reecy, J. ... Hayes, B. J. (2018).
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.
Nature Genetics,
50(3), 362-372.
https://doi.org/10.1038/s41588-018-0056-5
Olijhoek, D. W., Løvendahl, P., Lassen, J., Hellwing, A. L. F., Höglund, J. K., Weisbjerg, M. R., Noel, S. J., McLean, F.
, Højberg, O. & Lund, P. (2018).
Methane production, rumen fermentation, and diet digestibility of Holstein and Jersey dairy cows being divergent in residual feed intake and fed at 2 forage-to-concentrate ratios.
Journal of Dairy Science,
101(11), 9926-9940.
https://doi.org/10.3168/jds.2017-14278
Fang, L., Sørensen, P., Sahana, G., Panitz, F., Su, G., Zhang, S., Yu, Y.
, Li, B., Ma, L., Liu, G.
, Lund, M. S. & Thomsen, B. (2018).
MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle.
Scientific Reports,
8(1), Article 9345.
https://doi.org/10.1038/s41598-018-27729-y
Poulsen, N. A., Buitenhuis, A. J., Le, T. T. T., Gregersen, V. R., Lindahl, I. E. I., Christensen, B. S., Sørensen, E. S. & Larsen, L. B. (2018).
Milk Genomics: Variation in Danish Dairy milk and its possible exploitation in the dairy chain. Abstract from 15th International Symposium on Milk Genomics and Human Health, Sacramento, California, United States.
Shirali, M., Nielsen, B. J., Ostersen, T.
, Christensen, O. F., Madsen, P., Su, G. & Jensen, J. (2018).
Modelling of grouped recorded data for different population structures in pig breeding. Abstract from 69th Annual Meeting of the European Federation of Animal Science EAAP 2018, Dubrovnik, Croatia.
Skjerve, T. A., Grova, L., Sorheim, L. K.
, Slagboom, M., Eriksson, S.
, Kargo, M. & Wallenbeck, A. (2018).
Norwegian dairy farmers' preferences for breeding goal traits and associations with herd and farm characteristics.
Acta Agriculturae Scandinavica, Section A - Animal Science,
68(3), 117-123.
https://doi.org/10.1080/09064702.2019.1627406
Cericola, F., Lenk, I., Fè, D.
, Byrne, S., Jensen, C. S., Pedersen, M. G.
, Asp, T., Jensen, J. & Janss, L. (2018).
Optimized Use of Low-Depth Genotyping-by-Sequencing for Genomic Prediction among multi-parental Family Pools and Single Plants in Perennial Ryegrass (Lolium perenne L.).
Frontiers in Plant Science,
9, Article 369.
https://doi.org/10.3389/fpls.2018.00369
Kargo, M., Thomasen, J. R., Wallenbeck, A.
, Hjortø, L. & Slagboom, M. (2018).
Organic dairy breeding lines? – Possibilities and Requirements. Paper presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.
Difford, G. F., Olijhoek, D. W., Hellwing, A. L. F., Lund, P., Bjerring, M. A., de Haas, Y.
, Lassen, J. & Løvendahl, P. (2018).
Ranking cows’ methane emissions under commercial conditions with sniffers versus respiration chambers.
Acta Agriculturae Scandinavica, Section A - Animal Science,
68(1), 25-32.
https://doi.org/10.1080/09064702.2019.1572784
Løvendahl, P., Difford, G. F., Li, B., Chagunda, M. G. G., Huhtanen, P., Lidauer, M. H.
, Lassen, J. & Lund, P. (2018).
Review: Selecting for improved feed efficiency and reduced methane emissions in dairy cattle.
Animal,
12(S2), 336-349.
https://doi.org/10.1017/S1751731118002276
Song, H.
, Li, L., Ma, P., Zhang, S., Su, G., Lund, M. S., Zhang, Q. & Ding, X. (2018).
Short communication: Improving the accuracy of genomic prediction of body conformation traits in Chinese Holsteins using markers derived from high-density marker panels.
Journal of Dairy Science,
101(6), 5250-5254.
https://doi.org/10.3168/jds.2017-13456
Gao, H., Koivula, M.
, Jensen, J., Strandén, I., Madsen, P., Pitkänen, T., Aamand, G. P. & Mäntysaari, E. A. (2018).
Short communication: Genomic prediction using different single-step methods in the Finnish red dairy cattle population.
Journal of Dairy Science,
101(11), 10082-10088.
https://doi.org/10.3168/jds.2018-14913
Gao, H., Madsen, P., Pösö, J., Aamand, G. P., Lidauer, M.
& Jensen, J. (2018).
Short communication: Multivariate outlier detection for routine Nordic dairy cattle genetic evaluation in the Nordic Holstein and Red population.
Journal of Dairy Science,
101(12), 11159-11164.
https://doi.org/10.3168/jds.2018-15123
Bertolini, F., Servin, B., Talenti, A., Rochat, E., Kim, E. S., Oget, C., Palhière, I., Crisà, A., Catillo, G., Steri, R., Amills, M., Colli, L., Marras, G., Milanesi, M., Nicolazzi, E., Rosen, B. D., Van Tassell, C. P.
, Guldbrandtsen, B., Sonstegard, T. S. ... The ADAPTMAP consortium (Vivi Hunnicke Nielsen; member) (2018).
Signatures of selection and environmental adaptation across the goat genome post-domestication.
Genetics Selection Evolution,
50, 57.
https://doi.org/10.1186/s12711-018-0421-y
Slagboom, M., Wallenbeck, A.
, Hjortø, L., Sørensen, A. C., Rydhmer, L.
, Thomasen, J. R. & Kargo, M. (2018).
Simulating consequences of choosing a breeding goal for organic dairy production.
Journal of Dairy Science,
101(12), 11086-11096.
https://doi.org/10.3168/jds.2017-14316
Cai, Z., Villumsen, T. M., Asp, T., Guldbrandtsen, B., Sahana, G. & Lund, M. S. (2018).
SNP markers associated with body size and pelt length in American mink (Neovison vison).
BMC Genetics,
19(1), Article 103.
https://doi.org/10.1186/s12863-018-0688-6
Nielsen, H.-M., Ask, B.
, Christensen, O. F., Janss, L., Heidaritabar, M. & Madsen, P. (2018).
Social genetic effects for growth in Landrace pigs with varying group sizes. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 11.212 http://www.wcgalp.org/system/files/proceedings/2018/social-genetic-effects-growth-landrace-pigs-varying-group-sizes.pdf
Nayee, N., Sahana, G., Gajjar, S., Sudhakar, A., Trivedi, K.
, Lund, M. S. & Guldbrandtsen, B. (2018).
Suitability of existing commercial single nucleotide polymorphism chips for genomic studies in Bos indicus cattle breeds and their Bos taurus crosses.
Journal of Animal Breeding and Genetics (Online),
135(6), 432-441.
https://doi.org/10.1111/jbg.12356
Ma, P., Huang, J., Gong, W.
, Li, X., Gao, H., Zhang, Q., Ding, X. & Wang, C. (2018).
The impact of genomic relatedness between populations on the genomic estimated breeding values.
Journal of Animal Science and Biotechnology,
9(1), Article 64.
https://doi.org/10.1186/s40104-018-0279-4
Sverrisdóttir, E., Sundmark, E. H. R., Johnsen, H. Ø.
, Kirk, H. G., Asp, T., Janss, L., Bryan, G.
& Nielsen, K. L. (2018).
The value of expanding the training population to improve genomic selection models in tetraploid potato.
Frontiers in Plant Science,
9, Article 1118.
https://doi.org/10.3389/fpls.2018.01118
Liu, A., Lund, M. S., Boichard, D., Fritz, S.
, Karaman, E., Wang, Y.
& Su, G. (2018).
Using additional single nucleotide polymorphisms selected from whole genome sequence data for genomic prediction in Danish Jersey. In
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018 Article 586
http://www.wcgalp.org/system/files/proceedings/2018/using-additional-single-nucleotide-polymorphisms-selected-whole-genome-sequence-data-genomic.pdf
Olesen, J. E., Petersen, S. O., Lund, P., Jørgensen, U., Kristensen, T., Elsgaard, L., Sørensen, P. & Lassen, J. (2018).
Virkemidler til reduktion af klimagasser i landbruget. DCA - Nationalt Center for Fødevarer og Jordbrug. DCA rapport No. 130
http://web.agrsci.dk/djfpublikation/index.asp?action=show&id=1273
Poulsen, N. A., Le, T. T. T., Gregersen, V. R., Stenholt Hansen, M., Christensen, B.
, Buitenhuis, A. J., Sørensen, E. S. & Larsen, L. B. (2017).
Absolute quantification of individual milk proteins with ingredient potential. Abstract from 10th NIZO Dairy Conference , Papendal, Netherlands.
Poulsen, N. A., Le, T. T. T., Gregersen, V. R., Stenholt Hansen, M., Christensen, B.
, Buitenhuis, A. J., Sørensen, E. S. & Larsen, L. B. (2017).
Absolute quantification of individual milk proteins with ingredient potential. Poster session presented at 10th NIZO Dairy Conference , Papendal, Netherlands.
Uddin, M. M., Guldbrandtsen, B., Iso-Touru, T., Vilkki, J., de Koning, D.-J., Boichard, D.
, Lund, M. S. & Sahana, G. (2017).
A population scale discovery of large deletions in Holstein, Jersey and Nordic Red Cattle genome. Poster session presented at 36th International Society for Animal Genetics Conference, Dublin, Ireland.
http://www.isag.us/Docs/Proceedings/ISAG2017_Proceedings.pdf?v3
Liu, T., Luo, C.
, Wang, J., Ma, J., Shu, D.
, Lund, M. S., Su, G. & Qu, H. (2017).
Assessment of the genomic prediction accuracy for feed efficiency traits in meat-type chickens.
PLoS One,
12(3), Article e0173620.
https://doi.org/10.1371/journal.pone.0173620
Wu, X., Guldbrandtsen, B., Nielsen, U. S.
, Lund, M. S. & Sahana, G. (2017).
Association analysis for young stock survival index with imputed whole-genome sequence variants in Nordic Holstein cattle.
Journal of Dairy Science,
100(8), 6356-6370.
https://doi.org/10.3168/jds.2017-12688
Villumsen, T. M., Su, G., Cai, Z., Guldbrandtsen, B., Asp, T., Sahana, G. & Lund, M. S. (2017).
Bayes AS and GBLUP models for genomic selection in mink. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.
Wang, C.
, Li, X., Qian, R.
, Su, G., Zhang, Q. & Ding, X. (2017).
Bayesian methods for jointly estimating genomic breeding values of one continuous and one threshold trait.
PLoS One,
12(4), Article e0175448.
https://doi.org/10.1371/journal.pone.0175448
Hinrichs, D., Calus, M., De Koning, D.-J., Bennewitz, J., Meuwissen, T., Thaller, G., Szyda, J., Tetens, J., Juskiene, V.
& Guldbrandtsen, B. (2017).
Biodiversity within and between European Red dairy breeds - conversation though utilization. Abstract from EAAP, Tallin, Estonia.
Welderufael, B. G., Janss, L. L. G., de Koning, D. J.
, Sørensen, L. P., Løvendahl, P. & Fikse, W. F. (2017).
Bivariate threshold models for genetic evaluation of susceptibility to and ability to recover from mastitis in Danish Holstein cows.
Journal of Dairy Science,
100(6), 4706-4720.
https://doi.org/10.3168/jds.2016-11894
Zhu, Z., Noel, S. J., Difford, G. F., Al-Soud, W. A., Brejnrod, A., Sørensen, S. J.
, Lassen, J., Løvendahl, P. & Højberg, O. (2017).
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period.
PLoS One,
12(11), e0187858. Article e0187858.
https://doi.org/10.1371/journal.pone.0187858
Kjærup, R. B., Juul-Madsen, H. R., Norup, L. R., Sørensen, P. & Dalgaard, T. S. (2017).
Comparison of growth performance and immune parameters of three commercial chicken lines used in organic production.
Veterinary Immunology and Immunopathology,
187, 69-79.
https://doi.org/10.1016/j.vetimm.2017.04.007
Zhang, Q., Calus, M. P. L.
, Guldbrandtsen, B., Lund, M. S. & Sahana, G. (2017).
Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle.
Genetics Selection Evolution,
49(1), Article 60.
https://doi.org/10.1186/s12711-017-0336-z
Larsen, M., Hellwing, A. L. F., Larsen, T., Løvendahl, P., Sehested, J. & Weisbjerg, M. R. (2017).
Creatinine in milk as biomarker for muscle protein mobilisation in postpartum cows. 407. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.
Poulsen, N. A., Hein, L.
, Gregersen, S. B., Sørensen, L. P.
, Larsen, L. B., Kargo, M. & Buitenhuis, A. J. (2017).
Detailed milk fatty acid profiling of the Danish dairy cattle population. Abstract from 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Poulsen, N. A., Hein, L.
, Gregersen, S. B., Sørensen, L. P.
, Larsen, L. B., Kargo, M. & Buitenhuis, A. J. (2017).
Detailed milk fatty acid profiling of the Danish dairy cattle population. Poster session presented at 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Difford, G., de Haas, Y., Visker, M. H. P. W.
, Lassen, J., Bovenhuis, H., Veerkamp, R. F.
& Løvendahl, P. (2017).
Do breath gas measurements hold the key to unlocking the genetics of feed efficiency in dairy cows?. 184. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.
Ettema, J. F., Thomasen, J. R., Hjortø, L.
, Kargo, M., Ostergaard, S. & Sorensen, A. C. (2017).
Economic opportunities for using sexed semen and semen of beef bulls in dairy herds.
Journal of Dairy Science,
100(5), 4161-4171.
https://doi.org/10.3168/jds.2016-11333
Clasen, J. B., Norberg, E., Madsen, P., Pedersen, J.
& Kargo, M. (2017).
Estimation of genetic parameters and heterosis for longevity in crossbred Danish dairy cattle.
Journal of Dairy Science,
100(8), 6337-6342.
https://doi.org/10.3168/jds.2017-12627
Fang, L., Sahana, G., Ma, P., Su, G., Yu, Y., Zhang, S.
, Lund, M. S. & Sørensen, P. (2017).
Exploring the genetic architecture and improving genomic prediction accuracy for mastitis and milk production traits in dairy cattle by mapping variants to hepatic transcriptomic regions responsive to intra-mammary infection.
Genetics Selection Evolution,
49, Article 44.
https://doi.org/10.1186/s12711-017-0319-0
Reyer, H.
, Shirali, M., Ponsuksili, S., Murani, E., Varley, P. F.
, Jensen, J. & Wimmers, K. (2017).
Exploring the genetics of feed efficiency and feeding behaviour traits in a pig line highly selected for performance characteristics.
Molecular Genetics and Genomics,
292(5), 1001-1011.
https://doi.org/10.1007/s00438-017-1325-1
Shetty, N.
, Difford, G., Lassen, J.
, Løvendahl, P. & Buitenhuis, A. J. (2017).
Feasibility of FT-IR-milk spectra to predict methane emissions in danish lactating dairy cows. 199. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.
Villumsen, T. M., Cai, Z., Sahana, G., Guldbrandtsen, B., Asp, T. & Lund, M. S. (2017).
Gener i kortlagte genområder påvirker størrelse, kvalitet og reproduktion. In S. H. Møller & J. Malmkvist (Eds.),
Temadag om aktuel minkforskning (Vol. 103, pp. 32-40). DCA - Nationalt Center for Fødevarer og Jordbrug.
http://pure.au.dk/portal/files/116891581/DCArapport103.pdf
Løvendahl, P., Lauritsen, U., Hansen, L. F., Persson, J.
& Sarup, P. M. (2017).
Genetic assessment of intra-individual animal variation in milking order of Jersey cows. Abstract from 68th Annual Meeting of the European Federation of Animal Science , Tallinn, Estonia.
Rovere, G., Ducro, B. J., van Arendonk, J. A. M.
, Norberg, E. & Madsen, P. (2017).
Genetic correlations between dressage, show jumping and studbook-entry inspection traits in a process of specialization in Dutch Warmblood horses.
Journal of Animal Breeding and Genetics,
134(2), 162-171.
https://doi.org/10.1111/jbg.12241
Poulsen, N. A., Buitenhuis, A. J., C. Robinson, R., Barile, D.
& Larsen, L. B. (2017).
Genetic parameter estimation for bovine milk oligosaccharides in Danish dairy breeds. Abstract from 14th International Symposium on Milk Genomics and Human Health, Québec City, Canada.
Poulsen, N. A., Buitenhuis, A. J., C. Robinson, R., Barile, D.
& Larsen, L. B. (2017).
Genetic parameter estimation of bovine milk oligosaccharides in Danish dairy breeds. Abstract from Conference on milk composistion, functional genomics and health aspects, Larkollen, Norway.
Liu, A., Wang, Y.
, Sahana, G., Zhang, Q., Liu, L.
, Lund, M. S. & Su, G. (2017).
Genome-wide Association Studies for Female Fertility Traits in Chinese and Nordic Holsteins.
Scientific Reports,
7(1), Article 8487.
https://doi.org/10.1038/s41598-017-09170-9
Rohde, P. D., Gartner, B., Ward, K.
, Sørensen, P. & F C Mackay, T. (2017).
Genomic Analysis of Genotype-by-Social Environment Interaction for Drosophila melanogaster Aggressive Behavior.
Genetics (Print),
206(4), 1969-1984.
https://doi.org/10.1534/genetics.117.200642
Gebreyesus, G., Lund, M. S., Janss, L., Bovenhuis, H.
, Poulsen, N. A. & Buitenhuis, A. J. (2017).
Genomic prediction for detailed milk protein composition traits. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.
Ismael, A., Løvendahl, P., Fogh, A.
, Lund, M. S. & Su, G. (2017).
Improving genetic evaluation using a multitrait single-step genomic model for ability to resume cycling after calving, measured by activity tags in Holstein cows.
Journal of Dairy Science,
100(10), 8188-8196.
https://doi.org/10.3168/jds.2017-13122
Fang, L., Sahana, G., Su, G., Yu, Y., Zhang, S.
, Lund, M. S. & Sørensen, P. (2017).
Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle.
Scientific Reports,
7, Article 45560.
https://doi.org/10.1038/srep45560
Tesauro, C., Ferrando, B., Ma, X., Jepsen, M. L., Ivarsen, A. K., Frohlich, R., Stevnsner, T., Knudsen, B. R. & Ho, Y. P. (2017).
Isolation of functional mitochondria by inertial microfluidics - a new method to sort intracellular organelles from a small scale biological sample.
R S C Advances,
7(38), 23735-23741.
https://doi.org/10.1039/c7ra03384b
Shirali, M., Strathe, A. B., Mark, T.
, Nielsen, B. & Jensen, J. (2017).
Joint analysis of longitudinal feed intake and single recorded production traits in pigs using a novel Horizontal model.
Journal of Animal Science,
95(3), 1050-1062.
https://doi.org/10.2527/jas.2016.0606
Stjernholm, T., Ommen, P.
, Langkilde, A., Johansen, C., Iversen, L., Rosada, C. & Stenderup, K. (2017).
Leptin-deficiency in mice counteracts imiquimod (IMQ)-induced psoriasis-like skin inflammation while leptin stimulation induces inflammation in human keratinocytes.
Experimental Dermatology,
26(4), 338-345.
https://doi.org/10.1111/exd.13149
Hjortø, L., Thomasen, J. R.
, Berg, P., Kargo, M., Henryon, M.
, Liu, H. & Sørensen, A. C. (2017).
Managing lethal alleles using genomic optimum contribution selection. Abstract from EAAP, Tallin, Estonia.
Garcia-Baccino, C. A., Legarra, A.
, Christensen, O. F., Misztal, I., Pocrnic, I., Vitezica, Z. G. & Cantet, R. J. C. (2017).
Metafounders are related to Fst fixation indices and reduce bias in single-step genomic evaluations.
Genetics Selection Evolution,
49(1), 1-14. Article 34.
https://doi.org/10.1186/s12711-017-0309-2
Szalanski, M., Kristensen, T., Difford, G., Løvendahl, P. & Lassen, J. (2017).
Methane emission in Jersey cows during spring transition from in-door feeding to grazing. In
Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science (2017 ed., Vol. 23, pp. 148-148). Wageningen Academic Publishers.
https://doi.org/10.3920/978-90-8686-859-9
Wang, H.-M., Shi, L., Liang, T., Wang, B., Wu, W. J.
, Su, G., Wei, J., Li, P. & Huang, R. (2017).
MiR-696 regulates C2C12 cell proliferation and differentiation by targeting CNTFRα.
International Journal of Biological Sciences,
13(4), 413-425.
https://doi.org/10.7150/ijbs.17508
Gebreyesus, G., Lund, M. S., Buitenhuis, A. J., Bovenhuis, H.
, Poulsen, N. A. & Janss, L. (2017).
Modeling heterogeneous (co)variances from adjacent-SNP groups improves genomic prediction for milk protein composition traits.
Genetics Selection Evolution,
49(1), Article 89.
https://doi.org/10.1186/s12711-017-0364-8
Gebreyesus, G., Buitenhuis, A. J., Poulsen, N. A., Visker, M. H. P. W., Zhang, Q., van Valenberg, H. J. F., Sun, D. & Bovenhuis, H. (2017).
Multi-population GWAS for the de novo synthesis of milk fatty acids. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.
Li, B., Berglund, B., Fikse, W. F.
, Lassen, J., Lidauer, M. H., Mäntysaari, P.
& Løvendahl, P. (2017).
Neglect of lactation stage leads to naive assessment of residual feed intake in dairy cattle.
Journal of Dairy Science,
100(11), 9076-9084.
https://doi.org/10.3168/jds.2017-12775
Poulsen, N. A., Gregersen, V. R., Maciel, G. D. M., Madsen, L. B., Buitenhuis, A. J., Stenholt Hansen, M.
, Bendixen, C. & Larsen, L. B. (2017).
Novel genetic variation associated to CSN3 strongly affects rennet-induced milk coagulation.
International Dairy Journal,
71, 122-130.
https://doi.org/10.1016/j.idairyj.2017.03.012