Aarhus University Seal

Publications

Peer-reviewed publications at QGG

Sort by: Date | Author | Title

Loft, A., Emont, M. P., Weinstock, A., Divoux, A., Ghosh, A., Wagner, A., Hertzel, A. V., Maniyadath, B., Deplancke, B., Liu, B., Scheele, C., Lumeng, C., Ding, C., Ma, C., Wolfrum, C., Strieder-Barboza, C., Li, C., Truong, D. D., Bernlohr, D. A. ... Rosen, E. D. (2025). Towards a consensus atlas of human and mouse adipose tissue at single-cell resolution. Nature Metabolism, 7(5), 875-894. https://doi.org/10.1038/s42255-025-01296-9
Ollivier, R., Robin, S., Galland, M., Shih, P. Y., Morlière, S., Paulmann, M. K., Gershenzon, J., Kunert, G., Pilet-Nayel, M. L., Simon, J. C. & Sugio, A. (2025). Transcriptomic analysis reveals candidate molecular pathways involved in pea (Pisum sativum L.) resistance to pea aphid (Acyrthosiphon pisum Harris) biotypes. BMC Genomics, 26(1), Article 580. https://doi.org/10.1186/s12864-025-11742-3
Worm, J., Jørgensen, I. F., Davídsson, Ó. B., Hjalgrim, H., Röder, T., Ostrowski, S. R., Pedersen, O. B., Erikstrup, C., Bruun, M. T., Jensen, B. A., Sørensen, E., Ullum, H., Björnsdóttir, G., Thorgeirsson, T., Stefánsson, H., Sveinsson, Ó. Á., Stefansson, K., Schytz, H. W., Bendtsen, L. ... Westergaard, D. (2025). Trigeminal neuralgia and its comorbidities: A nationwide disease trajectory study. Pain, 166(4), 879-887. https://doi.org/10.1097/j.pain.0000000000003428
Verweij, J. W., Buitenhuis, A. J., Chu, T. T. & Nielsen, H. M. (2025). TROUTGANIC: Establishment of an organic line of rainbow trout. 227. Poster session presented at XV International Symposium on Genetics in Aquaculture, Cadíz, Spain.
Jové-Juncà, T., Crespo-Piazuelo, D., Hernández-Banqué, C., González-Rodríguez, O., Fang, L., Quintanilla, R. & Ballester, M. (2025). Unveiling regulatory variants in the blood transcriptome and their association with immunity traits in pigs. Frontiers in Immunology, 16, Article 1582982. https://doi.org/10.3389/fimmu.2025.1582982
Hansen, L. S. & Laursen, S. F. (2025). Vildt Naturligt - Laboratorie-larver og fluer i madpakken. Pictures, Video and sound recordings (digital), Danmarks Radio P1.
Lund, T. B., Christensen, T., Denver, S., Olsen, S. B., Nielsen, H. M., Kargo, M. & Sandøe, P. (2025). What Breeding Goal Should Organic Dairy Farmers Pursue? Results from a Willingness-To-Pay Study Among Consumers in Denmark, Germany, and Sweden. In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Vol. 39, pp. 730)
Kongsted, H., Krogh, M. A., Poulsen, B. G. & Christensen, O. F. (2024). Afdækning af eksisterende viden vedrørende variation i sæsonbestemt sodødelighed og genetisk variation i sodødelighed. DCA - Nationalt Center for Fødevarer og Jordbrug. Rådgivningsrapport fra DCA - Nationalt Center for Fødevarer og Jordbrug
Zhong, C., Li, X., Guan, D., Zhang, B., Wang, X., Qu, L., Zhou, H., Fang, L., Sun, C., Yang, N. & ChickenGTEx Consortium (2024). Age-dependent genetic architectures of chicken body weight explored by multidimensional GWAS and molQTL analyses. Journal of Genetics and Genomics, 51(12), 1423-1434. https://doi.org/10.1016/j.jgg.2024.09.003
Zhao, F., Xie, R., Fang, L., Xiang, R., Yuan, Z., Liu, Y. & Wang, L. (2024). Analysis of 206 whole-genome resequencing reveals selection signatures associated with breed-specific traits in Hu sheep. Evolutionary Applications, 17(6), Article e13697. https://doi.org/10.1111/eva.13697
Song, H., Chu, J., Li, W., Li, X., Fang, L., Han, J., Zhao, S. & Ma, Y. (2024). A Novel Approach Utilizing Domain Adversarial Neural Networks for the Detection and Classification of Selective Sweeps. Advanced Science, 11(14), Article 2304842. https://doi.org/10.1002/advs.202304842
Akol, R., Katumba, A., Mwikirize, C., Nakimbugwe, D., Ssemakula, F., Nawoya, S., Geoffrey, S. & Gebreyesus, G. (2024). Application of emerging technologies in insect monitoring and rearing. Abstract from Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf
Smith, A. G., Malinowska, M., Ruud, A. K., Janss, L., Krusell, L., Jensen, J. D. & Asp, T. (2024). Automated seminal root angle measurement with corrective annotation. AoB PLANTS, 16(5), Article plae046. https://doi.org/10.1093/aobpla/plae046
Sahana, G., (2024). Bidrag til OECD's undersøgelse om unikke koder ('unique identifiers') til genetisk modificerede dyr, No. 2024-0750791, 9 p., Nov 21, 2024. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug
Cheruiyot Bett , R., Gebreyesus, G., Maweu, A., Nkirote Kunyanga , C., Abigael, N., Philip, T., Geoffrey, S., MBI Tanga, C. & Sahana, G. (2024). Characterization of black soldier fly production systems and traits preferences in Kenya. 23. Abstract from Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf
Liu, H., Cui, T., Liu, H., Zhang, J., Luo, Q., Fei, S., Chen, K., Zhu, X., Zhu, C., Li, B., Fang, L., Zhao, J. & Ou, M. (2024). Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing. Scientific Data, 11(1), Article 1249. https://doi.org/10.1038/s41597-024-04075-5
Nielsen, H. M. & Kargo, M. (2024). Conservation of Danish Landrace pigs 1970​ using optimum contribution selection​. Poster session presented at NordGen’s farm animal conference , Uppsala, Sweden.
Chen, S., Liu, S., Shi, S., Yin, H., Tang, Y., Zhang, J., Li, W., Liu, G., Qu, K., Ding, X., Wang, Y., Liu, J., Zhang, S., Fang, L. & Yu, Y. (2024). Cross-Species Comparative DNA Methylation Reveals Novel Insights into Complex Trait Genetics among Cattle, Sheep, and Goats. Molecular Biology and Evolution, 41(2), Article msae003. https://doi.org/10.1093/molbev/msae003
Kristensen, P. S., Larsen, A. S., Deneken, G. & Nielsen, B. (2024). Cultivar mixtures in wheat. Poster session presented at QGG Breeding Network Day, Aarhus, Denmark.
Nielsen, H. M., Hansen, L. S., Gebreyesus, G., Sahana, G., Zaalberg, R. M., Kargo, M., Slagboom, M., Noer, N. K., Schou, T. M., Jensen, K., Sørensen, J. G., Laursen, S. F., Bahrndorff, S. & Kristensen, T. N. (2024). Danish initiatives in selective breeding in insects. Abstract from Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf
Rachah, A., Løvendahl, P., Reksen, O. & Kielland, C. (2024). Data visualization techniques for the identification of missing values in dairy farming. In Y. Belhamadia & M. Seaid (Eds.), PROCEEDINGS OF THE NINTH INTERNATIONAL CONFERENCE ON MODELING, SIMULATION AND APPLIED OPTIMIZATION (1 ed., Vol. 3034). AIP Publishing LLC. https://doi.org/10.1063/5.0195158
Sahana, G. & Cai, Z. (2024). Decoding the Genetic Dialogue: Rumen Microbiome and Host Genome Interaction in Enteric Methane Emission. In Book of Abstracts of the 75 th Annual Meeting of the European Federation of Animal Science (pp. 655-655). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Nielsen, H. M., Thomassen, J. R., Østergaard, S., Sørensen, L. P. & Kargo, M. (2024). Economic values for organic dairy cattle production systems in Denmark. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 177-177). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Tilhou, N. W., Lee, D. K., Ramstein, G. P., Poudel, H. P., Edme, S. J. & Casler, M. D. (2024). Empirical comparison of genomic selection to phenotypic selection for biomass yield of switchgrass. Agronomy Journal, 116(5), 2318-2327. https://doi.org/10.1002/agj2.21639
Degalez, F., Charles, M., Foissac, S., Zhou, H., Guan, D., Fang, L., Klopp, C., Allain, C., Lagoutte, L., Lecerf, F., Acloque, H., Giuffra, E., Pitel, F. & Lagarrigue, S. (2024). Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues. Scientific Reports, 14(1), Article 6588. https://doi.org/10.1038/s41598-024-56705-y
Houlahan, K., Schenkel, F. S., Miglior, F., Jamrozik, J., Stephansen, R. B., González-Recio, O., Charfeddine, N., Segelke, D., Butty, A. M., Stratz, P., VandeHaar, M. J., Tempelman, R. J., Weigel, K., White, H., Peñagaricano, F., Koltes, J. E., Santos, J. E. P., Baldwin, R. L. & Baes, C. F. (2024). Estimation of genetic parameters for feed efficiency traits using random regression models in dairy cattle. Journal of Dairy Science, 107(3), 1523-1534. https://doi.org/10.3168/jds.2022-23124
Sahana, G., Gebreyesus, G., Cheruiyot Bett , R., Kinyua, J., Roos, N., MBI Tanga, C., Mwikirize, C., Akol, R., Khamis, F. M., Karstoft, H., Bjerge, K., Nkirote Kunyanga , C., Hansen, L. S., Nielsen, H. M., Lund, M. S., Geoffrey, S., Walusimbi, S. & Nakimbugwe, D. (2024). FLYgene: Advancing Sustainable Breeding Programs and Genomic Tools for Black Soldier Fly (Hermetia illucens) in Kenya and Uganda. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 633-633) https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Georgalas, M. D., Hansen, L. S., Laursen, S. F., Bahrndorff, S., Sørensen, J. G., Kargo, M., Kristensen, T. N., Guldbrandtsen, B. & Nielsen, H. M. (2024). Genetic parameters for house fly larval performance in two dietary environments. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 634-634). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Lajevardi, R. K., Sahana, G., Manzanilla-Pech, C., Løvendahl, P. & Villumsen, T. M. (2024). Genetic parameters of Methane emission in Danish Jersey dairy cows. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 689-689). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Gredler-Grandl, B., Finocchiaro, R., Benzoni, L., Baes, C. F., Pryce, J. E., Stephansen, R. B., Bakke, K., Lassen, J., Frizzarin, M., Krattenmacher, N. & Richardson, C. (2024). Genetic selection for lower methane emission in dairy cattle – ready for implementation? In ICAR 2024 Proceedings
Kristensen, P. S., Larsen, A. S., Deneken, G. & Nielsen, B. (2024). Genetics of wheat cultivar mixtures. Poster session presented at 7th International Conference of Quantitative Genetics, Wien, Austria.
Zheng, S. L., Henry, A., Cannie, D., Lee, M., Miller, D., McGurk, K. A., Bond, I., Xu, X., Issa, H., Francis, C., De Marvao, A., Theotokis, P. I., Buchan, R. J., Speed, D., Abner, E., Adams, L., Aragam, K. G., Ärnlöv, J., Raja, A. A. ... COVIDsortium (2024). Genome-wide association analysis provides insights into the molecular etiology of dilated cardiomyopathy. Nature Genetics, 56(12), 2646-2658. Article 2254. https://doi.org/10.1038/s41588-024-01952-y
Sharif-Islam, M., van der Werf, J. H. J., Henryon, M., Chu, T. T., Wood, B. J. & Hermesch, S. (2024). Genotyping both live and dead animals to improve post-weaning survival of pigs in breeding programs. Genetics Selection Evolution, 56(1), Article 65. https://doi.org/10.1186/s12711-024-00932-4
Brulin , L., Sanchez, M. P., Cai, Z., Ducrocq, S., Even, G., Martel, S., Merlin, S., Audebert, C., Estellé, J., Sahana, G. & Croiseau, P. (2024). Host genes shape the lower gut microbiota of Holstein cows: evidence from sequence-based GWAS. In EAAP 2024 Book of Abstracts (pp. 654). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Tao, H., Abba, S. I., Al-Areeq, A. M., Tangang, F., Samantaray, S., Sahoo, A., Siqueira, H. V., Maroufpoor, S., Demir, V., Dhanraj Bokde, N., Goliatt, L., Jamei, M., Ahmadianfar, I., Bhagat, S. K., Halder, B., Guo, T., Helman, D. S., Ali, M., Sattar, S. ... Yaseen, Z. M. (2024). Hybridized artificial intelligence models with nature-inspired algorithms for river flow modeling: A comprehensive review, assessment, and possible future research directions. Engineering Applications of Artificial Intelligence, 129, Article 107559. https://doi.org/10.1016/j.engappai.2023.107559
Ollivier, R. & Asp, T. (2024). Identification of the genetic bases conferring stem rust resistance in perennial ryegrass. Poster session presented at Nordic Conference on Genetic Resources – Possibilities and Urgency, Malmö, Sweden.
Tenhunen, S. R., Berg, P., Kargo, M., Sørensen, L. P. & Thomasen, J. R. (2024). Impact of Genomic Selection on Inbreeding and Coancestry in Nordic Dairy Cattle. In T. Puhakainen & V. Jokela (Eds.), Maataloustieteen Päivät 2024 10.–11.1.2024 Viikki, Helsinki: ESITELMÄ- JA POSTERI-TIIVISTELMÄT (pp. 43)
Tenhunen, S. R., Thomassen, J. R., Sørensen, L. P., Berg, P., Kargo, M. & Nielsen, H. M. (2024). Impact of Inbreeding on Dairy Cow Survival. In Book of Abstracts of the 75th Annual Meeting of the European Federation of Animal Science (pp. 940-940). EAAP. https://docs.eaap.org/boa/2024_Florence_EAAP_Book_Abstracts.pdf
Gebreyesus, G., Nawoya, S., Ssemakula, F., Karstoft, H., Bjerge, K., Kunyanga, C. N., Mwikirize, C., Akol, R., Katumba, A., Nakimbugwe, D. & Geissmann, Q. (2024). Innovative phenotyping systems to advance selective breeding in black soldier fly: status from the FlyGene project. Journal of Insects as Food and Feed, 10(Supplement 1 (2024) S1–S353), S250. Article Volume 10, Supplement 1 (2024). https://doi.org/10.1163/23524588-20241013
Sahana, G., Chia, S. Y., Beesigamukama, D., Ng'ang'a, J., MBI Tanga, C., Kinyua, J., Ayieko, M., Nakimbugwe, D., Cheruiyot Bett , R., Menaga, M., Konyole, S., Anankware, J., Nyeko, P., Niassy, S., Kinyuru, J. N., Gebreyesus, G. & Roos, N. (2024). Insects for the Green Economy Conference (IGEC). https://doi.org/10.5281/zenodo.12605312
Wang, A., Su, G., Brito, L. F., Zhang, H., Shi, R., Liu, D., Guo, G. & Wang, Y. (2024). Investigating the relationship between fluctuations in daily milk yield as resilience indicators and health traits in Holstein cattle. Journal of Dairy Science, 107(3), 1535-1548. https://doi.org/10.3168/jds.2023-23495
Bordbar, F., Jensen, J., Wadood, A. A. & Yao, Z. (2024). Linkage Disequilibrium Decay in Selected Cattle Breeds. Animals, 14(22), Article 3317. https://doi.org/10.3390/ani14223317
Westwood, M. L., Geissmann, Q., O'Donnell, A. J., Rayner, J., Schneider, W., Zuk, M., Bailey, N. W. & Reece, S. E. (2024). Machine learning reveals singing rhythms of male Pacific field crickets are clock controlled. Behavioral Ecology, 35(1), Article arad098. https://doi.org/10.1093/beheco/arad098
Yang, L., Yin, H., Bai, L., Yao, W., Tao, T., Zhao, Q., Gao, Y., Teng, J., Xu, Z., Lin, Q., Diao, S., Pan, Z., Guan, D., Li, B., Zhou, H., Zhou, Z., Zhao, F., Wang, Q., Pan, Y. ... Liu, G. E. (2024). Mapping and functional characterization of structural variation in 1060 pig genomes. Genome Biology, 25(1), Article 116. https://doi.org/10.1186/s13059-024-03253-3
Cai, Z., Iso-Touru, T., Sanchez, M.-P., Kadri, N., Bouwman, A. C., Chitneedi, P. K., MacLeod, I. M., Vander Jagt, C. J., Chamberlain, A. J., Gredler-Grandl, B., Spengeler, M., Lund, M. S., Boichard, D., Kühn, C., Pausch, H., Vilkki, J. & Sahana, G. (2024). Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance. Genetics, selection, evolution : GSE, 56(1), Article 54. https://doi.org/10.1186/s12711-024-00920-8
Tang, X., Liu, P., Luo, N., Wen, J., Li, H., Zhao, G. & An, B. (2024). Mining Candidate Genes and Identifying Risk Factors for Leg Disease in Broilers: A Mendelian Randomization Study. International Journal of Molecular Sciences , 25(16), Article 8890. https://doi.org/10.3390/ijms25168890
Li, T., Xu, H., Teng, S., Suo, M., Bahitwa, R., Xu, M., Qian, Y., Ramstein, G. P., Song, B., Buckler, E. S. & Wang, H. (2024). Modeling 0.6 million genes for the rational design of functional cis-regulatory variants and de novo design of cis-regulatory sequences. Proceedings of the National Academy of Sciences of the United States of America, 121(26), Article e2319811121. https://doi.org/10.1073/pnas.2319811121
Liu, L., Yi, G., Yao, Y., Liu, Y., Li, J., Yang, Y., Liu, M., Fang, L., Mo, D., Zhang, L., Liu, Y., Niu, Y., Wang, L., Qu, X., Pan, Z., Wang, L., Chen, M., Fan, X., Chen, Y. ... Tang, Z. (2024). Multiomics analysis reveals signatures of selection and loci associated with complex traits in pigs. iMeta, 3(6), Article e250. https://doi.org/10.1002/imt2.250
Li, D., Wang, Y., Yuan, T., Cao, M., He, Y., Zhang, L., Li, X., Jiang, Y., Li, K., Sun, J., Lv, G., Su, G., Wang, Q., Pan, Y., Li, X., Jiang, Y., Yang, G., Groenen, M. A. M., Derks, M. F. L. ... Yu, T. (2024). Pangenome and genome variation analyses of pigs unveil genomic facets for their adaptation and agronomic characteristics. iMeta, 3(6), Article e257. https://doi.org/10.1002/imt2.257
Zeng, H., Zhang, W., Lin, Q., Gao, Y., Teng, J., Xu, Z., Cai, X., Zhong, Z., Wu, J., Liu, Y., Diao, S., Wei, C., Gong, W., Pan, X., Li, Z., Huang, X., Chen, X., Du, J., Zhao, F. ... PigGTEx Consortium (2024). PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs. Nucleic Acids Research, 52(D1), D980-D989. https://doi.org/10.1093/nar/gkad1080
Ojungu, M., Mali, B., Geoffrey, S., Nakimbugwe, D., Cheruiyot Bett , R., Gebreyesus, G. & Walusimbi, S. (2024). Production characteristics and constraints of black soldier fly farmers in Uganda. 27. Abstract from Insects for the Green Economy: Sustainable Food
Systems and Livelihoods in Africa, Nairobi, Kenya. https://qgg.au.dk/fileadmin/site_files/mb/QGG/Billeder/FLYgene/book-of-abstracts-insects-for-the-green-economy-conference-feb2024.pdf