Publications

Peer-reviewed publications at QGG

Li, H., Zhang, H., Chang, F., Wang, X., Shang, Y., Zhang, X., Zhou, J., Chen, J. & Li, Y. (2026). Depth-dependent responses of soil microorganisms to the interaction of soil salinity and straw interlayer. Soil and Tillage Research, 256, Article 106894. https://doi.org/10.1016/j.still.2025.106894

Best Jensen, R., Kjølhede, M., Just, J., Clegg, L.-A., Baek, R., Kaadt, E., Elfving, B., Hess, D. C., Andersen, G., Jørgensen, M. M., Blauenfeldt, R. A. & Drasbek, K. R. (2026). Exploring extracellular vesicle surface markers and microRNA regulation following remote ischemic conditioning in patients with stroke; a randomized-controlled pilot study. BMC Neuroscience. Advance online publication. https://doi.org/10.1186/s12868-025-00993-1

Madsen, C. K., Hama, J., Nielsen, B., Janss, L., Ottosen, C.-O., Ramstein, G. & Brinch-Pedersen, H., (2026). Forædling af planter med forbedrede klimaeffekter, No. 2025-0896873, 24 p., Jan 09, 2026. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Ahmad, A., Gebreyesus, G., Wold, J. P., Sonesson, A. K., Berg, P. & Difford, G. F. (2026). High-throughput NIR-based phenotyping for genomic prediction of feed intake and production traits in Atlantic Salmon. Aquaculture, 611, Article 743006. https://doi.org/10.1016/j.aquaculture.2025.743006

Gao, Y., Yang, L., Kuhn, K., Li, W., Zanton, G., Bowman, M., Zhao, P., Zhou, Y., Fang, L., Cole, J. B., Rosen, B. D., Ma, L., Li, C., Baldwin, R. L., Van Tassell, C. P., Zhang, Z., Smith, T. P. L. & Liu, G. E. (2026). Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle. Journal of Advanced Research, 79, 137-150. https://doi.org/10.1016/j.jare.2025.04.014

Liu, J., Li, Y., Yu, X., Ren, B., Chen, H., Ding, F., Jiang, F., Ottosen, C. O., Song, X., Mittler, R., Wu, Z. & Zhou, R. (2026). Specific redox homeostasis, ion accumulation and gas exchange responses in tomato plants subjected to combined drought and salinity stresses. Scientia Horticulturae, 355, Article 114543. https://doi.org/10.1016/j.scienta.2025.114543

Liu, X., Wang, T., Zheng, Z., Dong, C., Liu, W., Niu, Z., Yang, Y., Wu, X., Qiu, Q., Yang, Y., Li, K., Lenstra, J. A., Yan, P., Kang, M., Li, B., Fang, L. & Liu, J. (2025). A 14-bp motif in the KIT active promoter region is critical for melanin accumulation in yaks, mice, and humans. BMC Biology, 23(1), Article 208. https://doi.org/10.1186/s12915-025-02311-x

Kratschmer, A. K., Blicher-Mathiesen, G., Frederiksen, R. R., Thorsen, M., Janss, L. & Giannini-Kurina, F. (2025). Abstract 153 Satelite imaging insights on autumn cover, catch crop establishment, and nitrogen load in Danish catchments. Abstract from LuWQ2025. Land Use and Water Quality: Agriculture and the Environment , Aarhus, Denmark.

Lissner, E. S., Janns, L., Giannini-Kurina, F., Blicher-Mathiesen, G. & Thorsen, M. (2025). Abstract 154 Field-level nitrogen leadching and crop yield under extreme climate events. Abstract from LuWQ2025. Land Use and Water Quality: Agriculture and the Environment , Aarhus, Denmark.

Liu, H., Christensen, O. F., Eiríksson, J. H., Boichard, D., Milkevych, V., Thomasen, J. R. & Karaman, E. (2025). Accuracy of local ancestry inference and its impact on genomic prediction in admixed dairy cattle populations. Journal of Dairy Science. Advance online publication. https://doi.org/10.3168/jds.2025-27019, https://doi.org/10.3168/jds.2025-27019

Liu, H., Zhang, J., Cui, T., Zhang, X., Li, K., Wang, F., Luo, Q., Fei, S., Chen, B., Zhu, C., Chen, K., Zhu, X., Li, B., Zhao, J., Fang, L. & Ou, M. (2025). A chromosome-level genome assembly of the male darkbarbel catfish (Pelteobagrus vachelli) using PacBio HiFi and Hi-C data. Scientific Data, 12(1), Article 351. https://doi.org/10.1038/s41597-025-04662-0

White, E. L. F., Kjetså, M., Peippo, J., Morgan, L., Kantanen, J., Comizzoli, P., Steffensen, L. L., Kargo, M., Matson, T., Mayer, I. & Honkatukia, M. (2025). Across borders – the status and future opportunities for long-term conservation of Nordic animal genetic resources. Genetic Resources, 6(11), 57-70. https://doi.org/10.46265/genresj.baiq2696

Chu, T. T. & Jensen, J. (2025). ADAM-multi: software to simulate complex breeding programs for animals and plants with different ploidy levels and generalized genotypic effect models to account for multiple alleles. Frontiers in Genetics, 16, Article 1513615. https://doi.org/10.3389/fgene.2025.1513615

Yin, H., Zhao, Q., Yang, L., Yi, G., Yao, W., Fang, L. & Bai, L. (2025). A multi-tissue and -breed catalogue of chromatin conformations and their implications in gene regulation in pigs. BMC Genomics, 26(1), Article 484. https://doi.org/10.1186/s12864-025-11490-4

Han, B., Li, H., Zheng, W., Zhang, Q., Chen, A., Zhu, S., Shi, T., Wang, F., Zou, D., Song, Y., Ye, W., Du, A., Fu, Y., Jia, M., Bai, Z., Yuan, Z., Liu, W., Tuo, W., Hope, J. C. ... Sun, D. (2025). A multi-tissue single-cell expression atlas in cattle. Nature Genetics, 57(10), 2546-2561. https://doi.org/10.1038/s41588-025-02329-5

Zhu, S. L., Yan, Y. N., Jia, M. H., Li, H. C., Han, B., Shi, T., Xu, L. B., Wang, X. W., Zhang, Q., Zheng, W. J., Xu, J. H., Chen, L., Qi, W., Cai, S. J., Chen, X. P., Gu, F. F., Liu, J. X., Liu, G. E., Jiang, Y. ... Sun, H. Z. (2025). Antioxidants promote metabolic remodeling in cattle rumen epithelium revealed by single-cell resolution. iMeta, 4(6), Article e70100. https://doi.org/10.1002/imt2.70100

Thorsteinsson, M. M., Schönherz, A. A., Noel, S. J., Cai, Z., Niu, Z., Hellwing, A. L. F., Lund, P., Weisbjerg, M. R. & Nielsen, M. O. (2025). A preliminary study on the effects of red Bonnemaisonia hamifera seaweed on methane emissions from dairy cows. JDS Communications , 6(2), 217-222. https://doi.org/10.3168/jdsc.2024-0670

Stephansen, R. B., van Breukelen, A. E., Almasi, F., González-Recio, O., Teran, E., Milkevych, V., Miglior, F., Baes, C. F., Bakke, K. A., Benzoni, L., Finocchiaro, R., Frizzarin, M., Krattenmacher, N., Lassen, J., Pryce, J. E., Richardson, C. & Gredler-Grandl, B. (2025). Are methane sniffer phenotypes useful for genetic ranking of dairy cattle? In Book of Abstracts - ADSA 2025 Annual Meeting (pp. 143-144). Article 1513 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Hanini, A. & Beljadid, A. (2025). A semi-implicit method for modeling salinity and temperature in variable-density flow. Mathematics and Computers in Simulation, 238, 222-239. https://doi.org/10.1016/j.matcom.2025.04.032

Shi, R., van der Linden, A., Ducro, B., Puillet, L. & Bouquet, A. (2025). Assessing future economic and environmental impacts of selecting resilient dairy cows using integrated mechanistic and genetic modelling. Animal : an international journal of animal bioscience, 19(12), Article 101716. https://doi.org/10.1016/j.animal.2025.101716

Markant, A., Tabrizi, F., Grönvall, H., Speed, D. & Åhs, F. (2025). Association Between Polygenic Risk Scores and Treatment Response to Antidepressants, Benzodiazepines, and Antihistamines in Anxiety and Depression. Biological Psychiatry: Global Open Science, 5(3), Article 100470. https://doi.org/10.1016/j.bpsgos.2025.100470

Nielsen, H. M., Kargo, M. & Jørgensen, L. (2025). Avl tilpasset økologiske produktionssystemer og forbrugerpræferencer. In Program Økologikongres 2025

Morales Moreira, Z. P., Kak, K., Wei, Z. W., Yanez-Ortuno, D., Wang, N. R., Hedges, J. B., Chen, M. Y., Geissmann, Q., Zhang, W., Chatterton, S., Ryan, K. S. & Haney, C. H. (2025). Azomycin produced by Pseudomonas has both phytotoxic and anti-oomycete activity. Journal of Bacteriology, 207(12). https://doi.org/10.1128/jb.00292-25

Teng, J., Duan, C., Zhang, X., Chen, Z., Ning, C., Li, R., Gao, Y., Gao, H., Liu, H., Li, J., Wang, X. & Zhang, Q. (2025). Bayesian fine-mapping and Mendelian randomization leveraging expression quantitative trait loci reveal novel candidate causal genes for body conformation traits in cattle. Journal of Dairy Science, 108(8), 8637-8647. https://doi.org/10.3168/jds.2025-26361

Drachmann, F. F., Johansen, K., Kargo, M., Buitenhuis, A. J. & Therkildsen, M. (2025). Beef-on-dairy: current and potential meat quality of dairy-based beef production with culled Holstein cows and Danish Blue × Holstein crossbred calves. Acta Agriculturae Scandinavica A: Animal Sciences, 74(1), 72-82. https://doi.org/10.1080/09064702.2024.2403656, https://doi.org/10.1080/09064702.2024.2403656

Henry, J., Berrandou, T., Brewster, L. M. & Bouatia-Naji, N. (2025). Blood Pressure, Cardiometabolic Traits, and Cardiovascular Events in Women With Uterine Fibroids: A Genetic Correlation and Mendelian Randomization Study. Journal of the American Heart Association, 14(8), Article e036697. https://doi.org/10.1161/JAHA.124.036697

Sandrock, C., Generalovic, T. N., Paul, K., Petersen, G. E. L., Sellem, E., Smith, M. B., Tapio, M., Yakti, W., Beukeboom, L. W., Deruytter, D., Jiggins, C. D., Lefebvre, T., Librado, P., Pannebakker, B. A., Picard, C. J., Rhode, C., Sørensen, J. G., Bouwman, A. C., Hansen, L. S. & Obšteter, J. (2025). BugBook: Genetics of insects as food and feed. Journal of Insects as Food and Feed, 11(18), S397-S455. https://doi.org/10.1163/23524588-bja10260

Cantet, R. J. C. & Jensen, J. (2025). Causal inference and GWAS: Rubin, Pearl, and Mendelian randomization. Journal of Animal Breeding and Genetics, 142(2), 200-213. https://doi.org/10.1111/jbg.12898

Hansen, L. S., Bouwman, A. C., Sahana, G., Slagboom, M., Nielsen, H. M. & Ellen, E. D. (2025). Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation. Animal, 19(4), Article 101475. https://doi.org/10.1016/j.animal.2025.101475

Zhou, H., Clark, E., Guan, D., Lagarrigue, S., Fang, L., Cheng, H., Tuggle, C. K., Kapoor, M., Wang, Y., Giuffra, E. & Egidy, G. (2025). Comparative Genomics and Epigenomics of Transcriptional Regulation. Annual Review of Animal Biosciences, 13(1), 73-98. https://doi.org/10.1146/annurev-animal-111523-102217

Dai, D., Si, J., Jiang, L., Han, B., Wang, K., Wang, X., Yan, S., Yin, Y., Chen, W., Mao, H., Pauciullo, A., Li, S. T., Fang, L. & Zhang, Y. (2025). Comparative Single-Cell Transcriptomic Landscape Reveals the Regulatory Mechanisms of Lactation during Selective Breeding in Asian Water Buffalo. Advanced Science, 12(37), Article e08847. https://doi.org/10.1002/advs.202508847

Adeniyi, O. O., Grochowska, E., Cai, Z. & Lühken, G. (2025). Comparative transcriptome analysis reveals genes associated with variation in liver copper concentration in Polish Merino sheep. Scientific Reports, 15(1), Article 19576. https://doi.org/10.1038/s41598-025-04330-8

Poulsen, B. G., Lourenco, D., Ostersen, T., Nielsen, B., Leite, N. G., Henryon, M. & Christensen, O. F. (2025). Comparison between repeatability, reproductive stage stratified repeatability, and relative risk models for prediction of breeding values for functional survival in rotationally crossbred sows. Genetics Selection Evolution, 57(1), Article 72. https://doi.org/10.1186/s12711-025-01019-4

Digel, L., Justesen, M. L., Madsen, N. S., Fransaert, N., Wouters, K., Bonné, R., Plum-Jensen, L. E., Marshall, I. P. G., Jensen, P. B., Nicolas-Asselineau, L., Drace, T., Bøggild, A., Hansen, J. L., Schramm, A., Bøjesen, E. D., Nielsen, L. P., Manca, J. V. & Boesen, T. (2025). Comparison of cable bacteria genera reveals details of their conduction machinery. EMBO Reports, 26(7), 1749-1767. Article 13699. https://doi.org/10.1038/s44319-025-00387-8

Si, J., Dai, D., Gorkhali, N. A., Wang, M., Wang, S., Sapkota, S., Kadel, R. C., Sadaula, A., Dhakal, A., Faruque, M. O., Omar, A. I., Sari, E. M., Ashari, H., Dagong, M. I. A., Yindee, M., Rushdi, H. E., Elregalaty, H., Amin, A., Radwan, M. A. ... Zhang, Y. (2025). Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis). Advanced Science, 12(4), e2407615. Article 2407615. https://doi.org/10.1002/advs.202407615

Magnussen, M. G., Bouquet, A. E. R., Nielsen, H. M., Thomasen, J. R., Hjortø, L., Voergaard, J. L. & Kargo, M. (2025). Consequences of including CO2 taxes in the selection index of the Danish Blue line used for beef on dairy crossbreeding. In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (pp. 583-583). EAAP.

Chen, L., Li, H., Teng, J., Wang, Z., Qu, X., Chen, Z., Cai, X., Zeng, H., Bai, Z., Li, J., Pan, X., Yan, L., Wang, F., Lin, L., Luo, Y., Sahana, G., Lund, M. S., Ballester, M., Crespo-Piazuelo, D. ... Yi, G. (2025). Construction of a Multitissue Cell Atlas Reveals Cell-Type-Specific Regulation of Molecular and Complex Phenotypes in Pigs. Advanced Science, Article e04961. Advance online publication. https://doi.org/10.1002/advs.202504961

Fang, L. (2025). Context-specific regulatory variants in precision medicine and agriculture. Nature Reviews. Genetics, 26(2), 81. https://doi.org/10.1038/s41576-024-00798-8

Jensen, K., Thormose, S., Noer, N. K., Schou, T. M., Kargo, M., Gligorescu, A., Nørgaard, J. V., Hansen, L. S., Zaalberg, R. M., Nielsen, H. M. & Kristensen, T. N. (2025). Controlled and polygynous mating in the black soldier fly: advancing breeding programs utilizing quantitative genetic designs. Journal of Insects as Food and Feed, 11(13), 2321-2331. Article 20142144. https://doi.org/10.1163/23524588-bja10205

Skovbjerg, C. K., Sarup, P., Wahlström, E., Jensen, J. D., Orabi, J., Olesen, L., Jensen, J., Jahoor, A. & Ramstein, G. (2025). Correction: Multi-population GWAS detects robust marker associations in a newly established six-rowed winter barley breeding program (Heredity, (2025), 134, 1, (33-48), 10.1038/s41437-024-00733-x). Heredity, 134(3), 248-249. https://doi.org/10.1038/s41437-025-00751-3

Hansen, L. S., Bouwman, A. C., Sahana, G., Slagboom, M., Nielsen, H. M. & Ellen, E. D. (2025). Data for: Comparative evaluation of phenotypic, pedigree, and family-based selection in insect breeding using stochastic simulation. Dataset, Dryad Digital Repository. https://doi.org/10.5061/dryad.h18931zx7

Hendriksen, N. B., Madsen, C. K. & Sahana, G., (2025). DCA response to EFSA public consultation PC-1460 regarding scientific and technical assistance for a regular horizon scanning to assess new scientific data on plants, animals, microorganisms and products thereof obtained by new genomic techniques., No. 2025-0833795, 38 p., Jun 13, 2025. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Chalabi, S., Loonen, L., Boekhorst, J., Li, H., Fang, L., Harrison, P. W., Lakhal, W., Lluch, J., Sokolov, A., Djebali, S., Rau, A., Giuffra, E. & Wells, J. (2025). Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets. Genomics, 117(2), Article 110995. https://doi.org/10.1016/j.ygeno.2025.110995

Christensen, T., Denver, S., Lund, T. B., Olsen, S. B., Nielsen, H. M., Kargo, M. & Sandøe, P. (2025). Do consumers want specialized breeding goals for organic dairy cows – and how much are they willing to pay for individual breeding traits?. Abstract from The International Food Marketing Research Symposium (IFMRS) 2025, Athen, Greece.

Balbuena, L., Åhs, F., Peters, E., Mendes-Silva, A. & Speed, D. (2025). Does the Path From Cigarette Smoking to Suicide Death Go Through the Hospital? A Causal Mediation Analysis in a National Canadian Sample. Tobacco Use Insights, 18. https://doi.org/10.1177/1179173X251349612

Zhu, D., Shi, K., Li, C., Yan, Y., Li, H., Bai, Z., Tan, L., Guan, D., Zhao, Y., Wang, Y., Fan, B., Jiang, Z., Xu, Z., Feng, C., Fang, L., Hu, X. & ChickenGTEx Consortium (2025). Egg-laying ChickenGTEx resource deciphers context-specific regulatory effects on fertility traits. Nature Communications. Advance online publication. https://doi.org/10.1038/s41467-025-67245-y

Holur, P., Enevoldsen, K. C., Rajesh, S., Mboning, L., Georgiou, T., Bouchard, L. S., Pellegrini, M. & Roychowdhury, V. (2025). Embed-Search-Align: DNA sequence alignment using Transformer models. Bioinformatics, 41(3), Article btaf041. https://doi.org/10.1093/bioinformatics/btaf041

Ssemakula, F., Nawoya, S., Kunyanga, C. N., Akol, R., Nakimbugwe, D., Bett, R. C., Karstoft, H., Bjerge, K., Katumba, A., Mwikirize, C. & Gebreyesus, G. (2025). Emerging technologies for fast determination of nutritional quality and safety of insects for food and feed: A review. Computers and Electronics in Agriculture, 239, Article 111126. https://doi.org/10.1016/j.compag.2025.111126

Shrestha, M., Bai, Z., Gholipourshahraki, T., Hjelholt, A. J., Hu, S., Kjolby, M., Rohde, P. D. & Sørensen, P. (2025). Enhanced genetic fine mapping accuracy with Bayesian Linear Regression models in diverse genetic architectures. PLoS Genetics, 21(7), e1011783. Article e1011783. https://doi.org/10.1371/journal.pgen.1011783

van der Heide, M. E. & Janss, L., (2025). Estimated usage of organic and non-organic feed and protein-rich feedstuff for organic pig and poultry in 2024, No. 2025-0830467, 22 p., Sept 10, 2025. Rådgivningsnotat fra DCA - Nationalt Center for Fødevarer og Jordbrug

Þórarinsdóttir, Þ., Eiriksson, J., Gautason, E., Thomasen, J. R. & Liu, H. (2025). Evaluating genomic breeding programs for a small dairy cattle population with widespread use of private bulls. Journal of Dairy Science, 108(11), 12450-12462. https://doi.org/10.3168/jds.2025-26592

Ramírez-Díaz, J., Bobbo, T., Guldbrandtsen, B., Schönherz, A. A., Cozzi, P., Kusza, S., Sahana, G., Stella, A. & Manunza, A. (2025). Exploring the complex population structure and admixture of four local Hungarian sheep breeds. Frontiers in Genetics, 16, Article 1507315. https://doi.org/10.3389/fgene.2025.1507315

Mouritzen, T. W., Meurer, K. H. E., Bornhofen, E., Janss, L., Weih, M. & Andersen, S. U. (2025). Faba bean genetics and crop growth models – progress to date and opportunities for integration. Plant and Soil, 514(1), 47-64. https://doi.org/10.1007/s11104-025-07459-7

Tariku, H. G., Nielsen, H. M., Walusimbi, S., Hansen, L. S., Gebreyesus, G., Rugira-Kugonza, D., Bett , R. C., Nakimbugwe, D., Geoffrey, S. & Kassie, G. T. (2025). Farmers’ Preferences for Larval Traits in Small-Scale Black Soldier Fly (Hermetia illucens) Production System [019]. 43-43. Poster session presented at BSFcon 2025, Cambridge, United Kingdom.

The FarmGTEx Consortium (2025). FarmGTEx TWAS-server: An Interactive Web Server for Customized TWAS Analysis. Genomics, Proteomics and Bioinformatics, 23(1), Article qzaf006. https://doi.org/10.1093/gpbjnl/qzaf006

Milkevych, V. & Villumsen, T. M. (2025). Fault detection in the sniffer-based gas emission measurement systems. Computers and Electronics in Agriculture, 237, Article 110652. https://doi.org/10.1016/j.compag.2025.110652

Nielsen, H. M., Hansen, L. S., Zaalberg, R. M., Gebreyesus, G., Kargo, M., Noer, N. K., Schou, T. M., Jensen, K., Berggreen, I. E., Nørgaard, J. V., Henryon, M. & Kristensen, T. N. (2025). FLYBREED: Efficient production of the black soldier fly through selective breeding [018]. 36-36. Abstract from BSFcon 2025, Cambridge, United Kingdom.

Zaalberg, R. M., Williams, C. & Leishman, E. M. (2025). From debate to dialogue – improving collaboration between animal welfare and genetics. In J. E. Bolhuis, I. Reimert, M. V. D. Sluis, K. Visser & T. B. Rodenburg (Eds.), Proceedings of the 58th Congress of the ISAE 2025: A good life for all animals (pp. 122). ISAE, International Society for Applied Ethology. https://isae2025utrecht.nl/wp-content/uploads/2025/08/ISAE_Proceedings_6aug.pdf

Furtado, B. U., Nagy, I., Tyburski, J., Roulund, N., Asp, T. & Hrynkiewicz, K. (2025). Functional Analysis of Lolium perenne L. in Response to Fungal Endophyte Inoculation and Salinity Stress. Journal of Plant Growth Regulation, 44(9), 5593-5615. https://doi.org/10.1007/s00344-025-11782-9

Zhu, D., Wang, Y., Qu, H., Feng, C., Zhang, H., Sheng, Z., Jiang, Y., Nie, Q., Chu, S., Shu, D., Jiang, Z., Zhang, D., Fang, L., Li, H., Xu, Z., Zhao, Y., Wang, Y. & Hu, X. (2025). GCRP: Integrated Global Chicken Reference Panel from 11,951 Chicken Genomes. Genomics, Proteomics and Bioinformatics, 23(3), Article qzaf032. https://doi.org/10.1093/gpbjnl/qzaf032

Berg, J. A., Sævik, B. K., Trangerud, C., Madsen, P. & Lingaas, F. (2025). Genetic analyses of lumbosacral transitional vertebra and hip dysplasia in nine dog breeds in Norway. Acta Veterinaria Scandinavica, 67(1), Article 25. https://doi.org/10.1186/s13028-025-00810-z

Zaalberg, R. M., Chu, T. T., Jensen, J. & Villumsen, T. M. (2025). Genetic analysis of number of functional teats, piglet survival, and piglet weight in organic pigs. In Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP) (pp. 361-364). Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_78

Stephansen, R. B., Poulsen, B. G., Lassen, J. & Jensen, J. (2025). Genetic associations between feed efficiency traits and breeding goal traits in Nordic Holsteins. JDS Communications . Advance online publication. https://doi.org/10.3168/jdsc.2025-0898

Hein, L., Johansen, K. K., Buitenhuis, A. J., Liu, H. & Karaman, E. (2025). Genetic correlations between feed efficiency, methane emission and the traits in the Danish BeefxDairy evaluation. In Book of abstracts of the 76th Annual Meeting of the European Federation of Animal Science (EAAP) (pp. 584). EAAP. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Hastrup, R. L., Buitenhuis, A. J., Christensen, O. F. & Sørensen, A. C. (2025). Genetic correlations between slaughter loss and other economically important traits measured on live pigs in DanBred Yorkshire. In Book of abstracts of the 76th Annual Meeting of the European Federation of Animal Science (EAAP) (pp. 799). EAAP. https://docs.eaap.org/boa/2025_Innsbruck_EAAP_Book_Abstracts.pdf

Schneider, H., Lajevardi, R. K., Bjerring, M., Løvendahl, P., Lund, M. S. & Villumsen, T. M. (2025). Genetic parameters for enteric methane traits and their genetic connection with milk production in Danish Holstein cattle. Journal of Dairy Science, 108(11), 12519-12530. https://doi.org/10.3168/jds.2025-26853

Schneider, H. H., Lajevardi, R. K., Bjerring, M., Løvendahl, P., Lund, M. S., Villumsen, T. M. & Stephansen, R. B. (2025). Genetic parameters for enteric methane traits and their relationship with milk production in Danish Holstein and Danish Jersey Cattle. In Abstracts of the 2025 American Dairy Science Association® Annual Meeting (pp. 165-166). Article 1564 https://www.adsa.org/Portals/0/SiteContent/Docs/Meetings/2025ADSA/Abstracts_BOOK_2025_20250624-1249.pdf

Zhou, J., Xu, L., Liu, Q., Ma, J., He, J., Casey, D. S., Zhong, L., Su, G., Huang, R., Li, P. & Zhao, Q. (2025). Genetic parameters of vulva traits and impact of vulva scores on gilts culling in Large White pigs. ANIMAL, 19(4), Article 101472. https://doi.org/10.1016/j.animal.2025.101472

ChickenGTEx Consortium (2025). Genetic regulation of gene expression across multiple tissues in chickens. Nature Genetics, 57(5), 1298-1308. Article 1821. https://doi.org/10.1038/s41588-025-02155-9

CattleGTEx Consortium (2025). Genetic score omics regression and multitrait meta-analysis detect widespread cis-regulatory effects shaping bovine complex traits. PNAS Nexus, 4(7), Article pgaf208. https://doi.org/10.1093/pnasnexus/pgaf208

Epi25 Collaborative (2025). Genome-wide association meta-analyses of drug-resistant epilepsy. EBioMedicine, 115, 105675. Article 105675. https://doi.org/10.1016/j.ebiom.2025.105675

Henry, A., Mo, X., Finan, C., Chaffin, M. D., Speed, D., Issa, H., Denaxas, S., Ware, J. S., Zheng, S. L., Malarstig, A., Gratton, J., Bond, I., Roselli, C., Miller, D., Chopade, S., Schmidt, A. F., Abner, E., Adams, L., Andersson, C. ... Ghouse, J. (2025). Genome-wide association study meta-analysis provides insights into the etiology of heart failure and its subtypes. Nature Genetics, 57(4), 815-828. Article 163. https://doi.org/10.1038/s41588-024-02064-3

Li, X., Wang, Z., Zhu, M., Wang, B., Teng, S., Yan, J., Wang, H., Yuan, P., Cao, S., Qu, X., Wang, Z., Zhan, K., Choudhury, M. P., Yang, X., Bao, Q., He, S., Liu, L., Zhao, P., Jiang, J. ... Yi, G. (2025). Genomic Insights into Post-Domestication Expansion and Selection of Body Size in Ponies. Advanced Science, 12(16), Article 2413023. https://doi.org/10.1002/advs.202413023

Bai, Z., Chen, W., Cai, Z. & Sahana, G. (2025). Genomic insights into young stock survival in Danish Jersey cattle: A breed-specific QTL on chromosome 10 and its regulatory potential. Genomics, 117(6), Article 111134. https://doi.org/10.1016/j.ygeno.2025.111134, https://doi.org/10.1016/j.ygeno.2025.111134

Raffo, M. A., Sarup, P., Jensen, J., Guo, X., Jensen, J. D., Orabi, J., Jahoor, A. & Christensen, O. F. (2025). Genomic prediction for yield and malting traits in barley using metabolomic and near-infrared spectra. Theoretical and Applied Genetics, 138(1), Article 24. https://doi.org/10.1007/s00122-024-04806-7

Skovbjerg, C. K., Sarup, P., Wahlström, E. M., Jensen, J. D., Olesen, L., Orabi, J., Jensen, J., Ramstein, G. P. & Jahoor, A. (2025). Genomic prediction in a small barley population can benefit from training on related populations. G3 (Bethesda, Md.), 15(11). https://doi.org/10.1093/g3journal/jkaf218, https://doi.org/10.1093/g3journal/jkaf218

Johansen, N. H., Bellucci, A., Hansen, P. B., Marum, P., Amdahl, H., Gylstrøm, K. H., Rognli, O. A., Kemešytė, V., Brazauskas, G., Greve, M., Persson, C., Isolahti, M., Helgadóttir, Á., Aavola, R., Asp, T. & Ramstein, G. P. (2025). Genomic prediction of agronomic traits in perennial ryegrass (Lolium perenne L.) and genotype x environment interactions at the limit of the species distribution. Theoretical and Applied Genetics, 138(11), Article 281. https://doi.org/10.1007/s00122-025-05064-x

Schneider, H. H., Stephansen, R. B., Bjerring, M., Løvendahl, P., Lund, M. S. & Villumsen, T. M. (2025). Genomic prediction of methane emissions in Danish Holstein using single step and multi-trait prediction models. In Proceedings of the 2025 Interbull Meeting (61 ed., pp. 166-173) https://journal.interbull.org/index.php/ib/issue/view/73/8

Laursen, S. F., Hansen, L. S., Bahrndorff, S., Nielsen, H. M., Sahana, G., Sørensen, J. G., Ørsted, M. & Kristensen, T. N. (2025). Genotype-by-environment interactions for mean performance and trait variation in house fly larvae reared on two diets. Entomologia Experimentalis et Applicata, 173(6), 575-589. https://doi.org/10.1111/eea.13530

Dai, S., Zhao, P., Li, W., Peng, L., Jiang, E., Du, Y., Zhang, W., Dai, X., Yang, L., Li, Z., Xu, L., Lan, X., Lyu, W., Yang, L., Fang, L., Liu, G. E. & Zhou, Y. (2025). Global Pangenome Analysis Highlights the Critical Role of Structural Variants in Cattle Improvement and Identifies a Unique Event as a Novel Enhancer in IGFBP7⁺ Cells. Molecular Biology and Evolution, 42(9), Article msaf205. https://doi.org/10.1093/molbev/msaf205

Gautason, E., Þórarinsdóttir, Þ. & Sahana, G. (2025). Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle. Journal of Applied Genetics, 66(4), 1053-1064. Article e65550. https://doi.org/10.1007/s13353-025-00978-0

Gebreyesus, G., Geissmann, Q., Boutrup, T., Overton, J. & Nielsen, H. M. (2025). Harvest weight can be used to predict filet yield in pike-perch (Sander Lucioperca). In Abstract Book of the XV International Symposium on Genetics in Aquaculture (pp. 114) https://isgaxv.com/wp-content/uploads/2025/05/AbstractsBookv2_LR.pdf

Tabrizi, F., Rosén, J., Grönvall, H., William-Olsson, V. R., Arner, E., Magnusson, P. K., Palm, C., Larsson, H., Viktorin, A., Bernhardsson, J., Björkdahl, J., Jansson, B., Sundin, Ö., Zhou, X., Speed, D. & Åhs, F. (2025). Heritability and polygenic load for comorbid anxiety and depression. Translational Psychiatry, 15(1), 98. Article 98. https://doi.org/10.1038/s41398-025-03325-3

Kunduru, B., Bokros, N. T., Tabaracci, K., Kumar, R., Brar, M. S., Stubbs, C. J., Oduntan, Y., DeKold, J., Bishop, R., Woomer, J., Verges, V., McDonald, A. G., McMahan, C. S., DeBolt, S., Robertson, D. J. & Sekhon, R. S. (2025). High-density Phenotype Data of Intermediate Phenotypes Associated with Stalk Lodging Resistance in Maize. Scientific Data, 12(1), Article 1721. https://doi.org/10.1038/s41597-025-06008-2

Eiríksson, J. H., Þórarinsdóttir, Þ., Gautason, E., Thomasen, J. R. & Liu, H. (2025). Icelandic dairy cattle: successful conservation but how can the breed keep profitable? In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Vol. 39, pp. 331)

Hein, L., Thomasen, J. R., Kargo, M., Nielsen, H. M., Bouquet, A. E. R. & Liu, H. (2025). Impact of increased heterozygosity on Nordic Total Merit traits in dairy cattle: Potential for mating strategy optimization. Journal of Dairy Science, 108(9), 9946-9955. https://doi.org/10.3168/jds.2024-26200

Thomasen, J. R., Clasen, J., Fogh, A., Østergaard, S., Nielsen, H. M. & Kargo, M. (2025). Improved competitiveness of dairy producers through systematic crossbreeding – a holistic view. In Book of Abstracts of the 76th Annual Meeting of the European Federation of Animal Science (Vol. 39, pp. 581)

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Tenhunen, S., Thomasen, J. R., Sørensen, L. P., Kargo, M., Berg, P. & Nielsen, H. M. (2025). Inbreeding affects the survival of Danish Jersey and Holstein dairy cows. Journal of Dairy Science, 108(6), 6203-6215. https://doi.org/10.3168/jds.2024-26125

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Wang, X., Yuan, Y., Pei, F., Yang, J., Wang, C., Bao, P., Zhao, X., Liu, H., Gao, H., Hou, M., Gao, Y., Li, J., Hao, D. & Li, R. (2025). Integrated Analysis of Proteomics and Metabolomics for Heat Stress in Chinese Holstein Cows. Animals, 15(20), Article 3049. https://doi.org/10.3390/ani15203049

Hosseinzadeh, S., Rafat, S. A. & Fang, L. (2025). Integrated TWAS, GWAS, and RNAseq results identify candidate genes associated with reproductive traits in cows. Scientific Reports, 15(1), 1932. Article 1932. https://doi.org/10.1038/s41598-024-82448-x

Wang, X., Si, J., Wang, Y., Fang, L., Zhang, Z. & Zhang, Y. (2025). Integrating gene expression data via weighted multiple kernel ridge regression improved accuracy of genomic prediction. Genetics Selection Evolution, 57(1), Article 48. https://doi.org/10.1186/s12711-025-00997-9

Xu, Z., Lin, Q., Cai, X., Zhong, Z., Teng, J., Li, B., Zeng, H., Gao, Y., Cai, Z., Wang, X., Shi, L., Wang, X., Wang, Y., Zhang, Z., Lin, Y., Liu, S., Yin, H., Bai, Z., Wei, C. ... Zhang, Z. (2025). Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs. National Science Review, 12(5), Article nwaf048. https://doi.org/10.1093/nsr/nwaf048

Liu, P., An, B., Zheng, J., Wang, Q., Yang, Z., Li, Z., Liu, D., Ying, F., Wen, J., Fang, L. & Zhao, G. (2025). Integrative Omics Defines Metabolic Biomarkers and Genetic Regulatory Mechanisms of Mortality Risk. Advanced Science. Advance online publication. https://doi.org/10.1002/advs.202514464

An, B., Liu, P., Yang, Z., Ying, F., Liu, D., Wen, J. & Zhao, G. (2025). Integrative transcriptomics and metabolomics reveal neuroendocrine-lipid crosstalk and adenosine signaling in broiler under heat stress. BMC Genomics, 26(1), Article 699. https://doi.org/10.1186/s12864-025-11881-7

Bouquet, A., Slagboom, M., Thomasen, J. R., Kargo, M., Friggens, N. C. & Puillet, L. (2025). Interfacing mechanistic and breeding scheme simulation to predict selection response on lactation efficiency in dairy cows under different nutritional environments. Genetics Selection Evolution, 57(1), Article 68. https://doi.org/10.1186/s12711-025-01013-w

Chen, J., Huang, R., Ma, J., Su, G., Huang, M., Zhou, W., Liu, C., Liu, Q., Li, P. & Zhao, Q. (2025). Investigating the genetic imprint of long body length, high lean meat rate, high fertility and long gestation period in Danish Landrace pigs. BMC Genomics, 26(1), Article 869. https://doi.org/10.1186/s12864-025-12092-w

Gensemer, C., Petrucci, T., Beck, T., Daylor, V., Griggs, M., Griggs, C., Weintraub, A., Byerly, K., Guo, L., Morningstar, J., Kornblau, I., Biggs, R., Moore, K., Koren, N., Hastings, C., Oberlies, E., Zientara, E. R., Devey, E., Dooley, S. ... Norris, R. A. (2025). KLK15 alters connective tissues in hypermobile Ehlers-Danlos syndrome. iScience, 28(9), Article 113343. https://doi.org/10.1016/j.isci.2025.113343

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