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Publications

Peer-reviewed publications at QGG

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Alemu, S. W., Calus, M. P. L., Muir, W. M., Peeters, K., Vereijken, A. & Bijma, P. (2016). Genomic prediction of survival time in a population of brown laying hens showing cannibalistic behavior. Genetics Selection Evolution, 48(1), Article 68. https://doi.org/10.1186/s12711-016-0247-4
Difford, G., Lassen, J. & Løvendahl, P. (2016). Genes and microbes, the next step in dairy cattle breeding. In Book of Abstracts of the 67th Annual Meeting of the European Federation of Animal Science: EAAP 2016, 67th Annual Meeting of the European Federation of Animal Science, Belfast UK, 29 Aug – 2 Sept 2016 (Vol. 22, pp. 285)
Ismael, A. I. S., Strandberg, E., Berglund, B., Kargo, M., Fogh, A. & Løvendahl, P. (2016). Genotype by environment interaction for activity based estrus traits in Danish Holstein. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-830-8
Salleh, S. M., Mazzoni, G., Höglund, J., Olijhoek, D., Lund, P., Løvendahl, P. & Kadarmideen, H. N. (2016). Transcritpomics of feed efficiency in Nordic dairy cattle. Abstract from 67th Annual Meeting of the European Federation of Animal Science (EAAP 2016), Belfast, United Kingdom.
Iddamalgoda, L., Das, P. S., Aponso, A., Sundararajan, V. S., Suravajhala, P. & Valadi, J. K. (2016). Data Mining and Pattern Recognition Models for Identifying Inherited Diseases: Challenges and Implications. Frontiers in Genetics, 7(AUG), Article 136. https://doi.org/10.3389/fgene.2016.00136
Simianer, H. & Sørensen, P. (2016). ICQG 5 on Madison's Isthmus links genomics and statistics of complex traits. Journal of Animal Breeding and Genetics (Online), 133(4), 249-250. https://doi.org/10.1111/jbg.12231
Gregersen, V. R., Madsen, L. B., Poulsen, N. A., Thomsen, B., Panitz, F., Stenholt Hansen, M., Buitenhuis, A. J., Holm, L.-E., Larsen, L. B. & Bendixen, C. (2016). Fine mapping of a quantitative trait locus. Poster session presented at 2nd Annual Danish Bioinformatics Conference, Odense, Denmark.
Vanlierde, A., Grelet, C., Gengler, N., Ferris, C. P., Sørensen, M. T., Höglund, J., Carter, F., Ingvartsen, K. L., Santoro, A., Dardenne, P. & Dehareng, F. (2016). Potential use of milk MIR spectra to obtain new health phenotypes for dairy cows in the framework of the GplusE project. In Book of abstracts of the 67th Annual Meeting of the European Federation of Animal Science (67 ed.). Wageningen Academic Publishers.
Groeneveld, L. F., Gregusson, S., Guldbrandtsen, B., Hiemstra, S. J., Hveem, K., Kantanen, J., Lohi, H., Stroemstedt, L. & Berg, P. (2016). Domesticated Animal Biobanking: Land of Opportunity. PLoS Biology, 14(7), Article e1002523. https://doi.org/10.1371/journal.pbio.1002523
Christensen, M. H., Jensen, S. B., Miettinen, J. J., Luecke, S., Prabakaran, T., Reinert, L. S., Mettenleiter, T., Chen, Z. J., Knipe, D. M., Sandri-Goldin, R. M., Enquist, L. W., Hartmann, R., Mogensen, T. H., Rice, S. A., Nyman, T. A., Matikainen, S. & Paludan, S. R. (2016). HSV-1 ICP27 targets the TBK1-activated STING signalsome to inhibit virus-induced type I IFN expression. EMBO Journal, 35(13), 1385-1399. https://doi.org/10.15252/embj.201593458
Bellucci, A., Edriss, V., Jensen, J. D., Orabi, J., Jahoor, A. & Jensen, J. (2016). Genomic Prediction in Spring Barley. Poster session presented at 12th International Barley Genetics Symposium, Minneapolis, United States.
Zhu, Z., Noel, S. J., Difford, G., Al-Soud, W. A., Brejnrod, A. D., Sørensen, S. J., Lassen, J., Løvendahl, P. & Højberg, O. (2016). Community structure of rumen metabolically active bacterial and archaeal communities in dairy cows over the transition period. Poster session presented at INRA - Rowett 2016, Clermont-Ferrand, France.
Zhu, Z., Noel, S. J., Difford, G., Abu Al-Soud, W., Brejnrod, A., Sørensen, J., Lassen, J., Løvendahl, P. & Højberg, O. (2016). The community structure of rumen metabolically active bacterial and archaeal communities in dairy cows over the transition period. In Proceedings: Gut Microbiology - 20 Years & counting. 10th INRA-Rowett Symposium (pp. 92-92).
Wang, L., Madsen, P., Sapp, R., Henshall, J., Hawken, R., Alemu, S. W., Sørensen, A. C. & Jensen, J. (2016). Bias due to selective genotyping in genomic prediction using H-BLUP. Poster session presented at XXV World's Poultry Congress (WPC2016), Beijing, China.
Wang, L., Madsen, P., Sapp, R., Henshall, J., Hawken, R., Alemu, S. W., Sørensen, A. C. & Jensen, J. (2016). Bias due to selective genotyping in genomic prediction using H-BLUP. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Wu, X., Sahana, G., Guldbrandtsen, B. & Lund, M. S. (2016). Phenotypic effect of recessive embryonic lethal haplotypes on non-return rate in cattle. Abstract from 5th International Conference on Quantitative Genetics , Madison, United States.
Sahana, G., Zhang, Q., Guldbrandtsen, B. & Lund, M. S. (2016). Rare variants’ impact on female fertility in dairy cattle. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Katam, R., Sakata, K., Suravajhala, P., Pechan, T., Kambiranda, D. M., Naik, K. S., Guo, B. & Basha, S. M. (2016). Comparative leaf proteomics of drought-tolerant and -susceptible peanut in response to water stress. Journal of Proteomics, 143, 209-226. https://doi.org/10.1016/j.jprot.2016.05.031
Gebreyesus, G., Lund, M. S., Janss, L., Bovenhuis, H. & Buitenhuis, A. J. (2016). Fine mapping and genomic prediction for detailed milk protein composition. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Welderufael, B. G., Janss, L., De Koning, D.-J., Sørensen, L. P., Løvendahl, P. & Fikse, W. F. (2016). Joint genetic evaluation of mastitis susceptibility and recovery ability in Holstein cows. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Derks, M., Blavy, P., Höglund, J. & Friggens, N. (2016). Templates to classify progesterone profiles, built using real-time milk progesterone measurements. In C. Kamphuis & W. Steeneveld (Eds.), Precision Dairy Farming 2016 Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-829-2
Ashraf, B., Edriss, V., Akdemir, D., Autrique, E., Bonnett, D., Crossa, J., Janss, L., Singh, R. & Jannink, J. L. (2016). Genomic prediction using phenotypes from pedigreed lines with no marker data. Crop Science, 56(3), 957-964. https://doi.org/10.2135/cropsci2015.02.0111
Poulsen, J. B., Lescai, F., Grove, J., Bækvad-Hansen, M., Christiansen, M., Hagen, C. M., Maller, J., Stevens, C., Li, S., Li, Q., Sun, J., Wang, J., Nordentoft, M., Werge, T. M., Mortensen, P. B., Børglum, A. D., Daly, M., Hougaard, D. M., Bybjerg-Grauholm, J. & Hollegaard, M. V. (2016). High-Quality Exome Sequencing of Whole-Genome Amplified Neonatal Dried Blood Spot DNA. PLoS One, 11(4), e0153253. Article e0153253. https://doi.org/10.1371/journal.pone.0153253
Kargo, M., Hjortø, L., Slagboom, M., Thomasen, J. R., Buitenhuis, A. J., Hein, L., Pedersen, J. & Munk, A. (2016). SOBcows - Specialized organic breeding goals and breeding schemes within dairy production. Paper presented at Nordic workshop in dairy cattle genetics and genomics, Copenhagen, Denmark. http://orgprints.org/30151/
Begli, H. E., Torshizi, R. V., Masoudi, A. A., Ehsani, A. & Jensen, J. (2016). Longitudinal analysis of body weight, feed intake and residual feed intake in F2 chickens. Livestock Science, 184, 28-34. https://doi.org/10.1016/j.livsci.2015.11.018
Manzanares, C., Barth, S., Thorogood, D., Byrne, S., Yates, S., Czaban, A., Asp, T., Yang, B. & Studer, B. (2016). A Gene Encoding a DUF247 Domain Protein Cosegregates with the S Self-Incompatibility Locus in Perennial Ryegrass. Molecular Biology and Evolution, 33(4), 870-884. https://doi.org/10.1093/molbev/msv335
Michot, P., Chahory, S., Marete, A. G., Grohs, C., Dagios, D., Donzel, E., Aboukadiri, A., Deloche, M.-C., Allais-Bonnet, A., Chambrial, M., Barbey, S., Genestout, L., Boussaha, M., Danchin-Burge, C., Fritz, S., Boichard, D. & Capitan, A. (2016). A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds. Genetics Selection Evolution, 48. https://doi.org/10.1186/s12711-016-0232-y
Shirali, M., Varley, P. F. & Jensen, J. (2016). Bayesian analysis of selection response on linear or ratio feed efficiency traits in pigs. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-830-8
Thodberg, K., Sørensen, L. U., Videbech, P. B., Haun Poulsen, P., Houbak, B., Damgaard, V., Keseler, I., Edwards, D. & Christensen, J. W. (2016). Behaviour of nursing home residents towards a visiting animal and the human companion - A randomized controlled trial in 4 Danish nursing homes. In M. B. Jensen, K. Thodberg & J. W. Christensen (Eds.), Nordic ISAE 2016: Proceedings of the 26th Nordic Regional Symposium of the International Society for Applied Ethology (January 2016 ed., Vol. DCA Report No. 070, pp. 27-27). http://web.agrsci.dk/djfpublikation/djfpdf/DCArapport070.pdf
Szalanski, M., Difford, G., Løvendahl, P. & Lassen, J. (2016). Comparing methods to analyse raw, large-scale methane data. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-830-8
Jardim, J. G., Sahana, G., Quirino, C., Peixoto, M., Santos, G. & Lund, M. S. (2016). Detection of QTL for mastitis resistance and related functional traits in Bos Taurus and Bos indicus. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-830-8
Salleh, S. M., Mazzoni, G., Höglund, J., Olijhoek, D., Lund, P., Løvendahl, P. & Kadarmideen, H. (2016). Differential Expression of Genes between High and Low Feed Efficiency in Holstein and Jersey Cattle. Poster session presented at PAG ASIA 2016, Singapore.
Marete, A. G., Lund, M. S. & Boichard, D. A. (2016). Dissecting dairy complex traits beyond additive effects using genetic markers. Abstract from 19 thSéminaire des thésards du Département de Génétique Animale, Toulouse, France.
Marete, A. G., Lund, M. S. & Boichard, D. A. (2016). Dissecting dairy complex traits using genetic markers: combining GWASand functional pathways. Poster session presented at 5th International Conference on Quantitative Genetics , Madison, United States.
Shirali, M., Varley, P. F. & Jensen, J. (2016). ECO FCE: Value of RFI vs FCR in genetic selection programs. In ook of AbsBook of abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-830-8
Sarup, P. M., Jensen, J., Shirali, M., Ostersen, T., H, R., Varley, P. & Sørensen, P. (2016). ECO-FCE: Integrative genomic models for FCE in monogastries. In Book of Abstracts of the 67th Annual Meeting of the European Association for Animal Production Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-830-8